Resource

Id	summary/johansen2025Crossspecies/pseudobulk_atac/human/SN-VTR_GAD2_Dopa/bigwigcontent_copy
Type	position_score
Version	0
Summary	ATAC big wig for SN-VTR_GAD2_Dopa cell type from human
Description
Labels	assay: 10x_Multiome brain_region: basal ganglia cell_type: SN-VTR_GAD2_Dopa data_types: atac_signal dataset: johansen2025Crossspecies modalities: ATAC processing_level: RPKM_normalized reference_genome: reference/Human/genome/GRCh38.p14 resolution: pseudo_bulk_cell_type sequencing_platform: Illumina species: human vendor: 10x_Genomics

Scores (1)

ID	Type	Default annotation	Description	Histogram	Range	Summary
johansen2025Crossspecies_atac_human_SN-VTR_GAD2_Dopa	float	johansen2025Crossspecies_atac_human_SN-VTR_GAD2_Dopa	RPKM?		[7.56, 333]	n 30,630,990 mean 8 sd 1.98

n counts base pairs; sd is the population standard deviation.

Chromosome	Covered positions	Covered %	Segments
all chromosomes	30630990	0.93%	2959070
chr1	2752700	1.11%	265173
chr2	2513900	1.04%	243596
chr3	2084840	1.05%	202164
chr4	1511610	0.79%	147266
chr5	1698990	0.94%	164789
chr6	1568500	0.92%	152038
chr7	1589770	1.00%	153879
chr8	1410500	0.97%	136789
chr9	1275590	0.92%	123132
chr10	1536580	1.15%	148462
chr11	1571390	1.16%	151217
chr12	1524930	1.14%	147162
chr13	824710	0.72%	80315
chr14	999230	0.93%	96477
chr15	953750	0.94%	91989
chr16	1167180	1.29%	112022
chr17	1319630	1.58%	125996
chr18	730110	0.91%	70971
chr19	982990	1.68%	92759
chr20	851770	1.32%	81836
chr21	358770	0.77%	34774
chr22	629870	1.24%	60262
chrX	748990	0.48%	73566
chrY	18040	0.03%	1786
GL000009.2	130	0.06%	13
GL000194.1	890	0.46%	87
GL000195.1	520	0.28%	51
GL000205.2	1420	0.77%	139
GL000218.1	540	0.34%	54
GL000219.1	1780	0.99%	172
KI270711.1	160	0.38%	16
KI270713.1	430	1.06%	42
KI270721.1	20	0.02%	2
KI270726.1	20	0.05%	2
KI270727.1	60	0.01%	6
KI270728.1	580	0.03%	56
KI270731.1	40	0.03%	4
KI270734.1	60	0.04%	6
668 contigs with no values (199349686 bp)	0	0.00%	0

	segments	min	max	mean	median
segments	2959070	10	80	10.35	10