Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/SN_EBF2_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for SN_EBF2_GABA cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: SN_EBF2_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_SN_EBF2_GABA float

johansen2025Crossspecies_atac_human_SN_EBF2_GABA
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_SN_EBF2_GABA [0.609, 283]
n
294,817,020
mean
0.787
sd
0.558

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2948170208.96% 25861481
chr1 25806570 10.37% 2247344
chr2 24168290 9.98% 2128168
chr3 19424550 9.80% 1715517
chr4 15651400 8.23% 1398441
chr5 16655770 9.17% 1473864
chr6 15954170 9.34% 1414891
chr7 15775130 9.90% 1386056
chr8 14016890 9.66% 1237467
chr9 12313720 8.90% 1076771
chr10 14147150 10.57% 1239129
chr11 15620680 11.56% 1356372
chr12 14493350 10.87% 1268521
chr13 8154040 7.13% 728593
chr14 9491310 8.87% 830961
chr15 9298440 9.12% 811390
chr16 10099220 11.18% 871220
chr17 11731050 14.09% 1002664
chr18 7261110 9.03% 642485
chr19 8560290 14.60% 732106
chr20 8251080 12.80% 711570
chr21 3506350 7.51% 308226
chr22 5925510 11.66% 500397
chrX 8405800 5.39% 769660
chrY 49980 0.09% 4728
GL000009.2 1390 0.69% 135
GL000194.1 9460 4.94% 835
GL000195.1 5050 2.76% 450
GL000205.2 13440 7.24% 1160
GL000213.1 240 0.15% 22
GL000218.1 4080 2.53% 380
GL000219.1 10010 5.59% 899
KI270711.1 700 1.66% 61
KI270713.1 2830 6.95% 250
KI270721.1 560 0.56% 54
KI270726.1 20 0.05% 2
KI270727.1 920 0.21% 82
KI270728.1 5060 0.27% 478
KI270731.1 610 0.40% 58
KI270734.1 800 0.48% 74
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 25861481 10 140 11.4 10
global segment-length histogram

Files

Filename Size md5
SN_EBF2_GABA.bw 176.1 MB 08a93a3ee3269039b4d7e58c500dccf1
genomic_resource.yaml 1.1 KB f5b85590142208976bae9fee29c01a75
statistics/