Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/SN_GATA3-PVALB_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for SN_GATA3-PVALB_GABA cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: SN_GATA3-PVALB_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_SN_GATA3-PVALB_GABA float

johansen2025Crossspecies_atac_human_SN_GATA3-PVALB_GABA
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_SN_GATA3-PVALB_GABA [359, 1.08e+03]
n
659,220
mean
364
sd
42.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 6592200.02% 65780
chr1 62330 0.03% 6213
chr2 16780 0.01% 1672
chr3 46930 0.02% 4682
chr4 51510 0.03% 5144
chr5 73700 0.04% 7358
chr6 13020 0.01% 1300
chr7 53870 0.03% 5371
chr8 26490 0.02% 2642
chr9 23440 0.02% 2340
chr10 18410 0.01% 1836
chr11 36040 0.03% 3594
chr12 35570 0.03% 3549
chr13 36460 0.03% 3643
chr14 40480 0.04% 4040
chr15 25860 0.03% 2584
chr16 11240 0.01% 1120
chr17 25980 0.03% 2590
chr18 17570 0.02% 1753
chr19 11650 0.02% 1165
chr20 7550 0.01% 755
chr21 6780 0.01% 677
chr22 5080 0.01% 507
chrX 12360 0.01% 1233
chrY 40 <0.01% 4
GL000205.2 40 0.02% 4
GL000218.1 20 0.01% 2
GL000219.1 20 0.01% 2
679 contigs with no values (202789581 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 65780 10 30 10.02 10
global segment-length histogram

Files

Filename Size md5
SN_GATA3-PVALB_GABA.bw 465.51 KB 35df4ff6987228c47de435884648c625
genomic_resource.yaml 1.13 KB 9dbddec7bffe35f054d2f47d3efa6518
statistics/