Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/SN_SEMA5A_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for SN_SEMA5A_GABA cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: SN_SEMA5A_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_SN_SEMA5A_GABA float

johansen2025Crossspecies_atac_human_SN_SEMA5A_GABA
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_SN_SEMA5A_GABA [0.926, 371]
n
211,036,210
mean
1.14
sd
0.685

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2110362106.41% 18890364
chr1 18843540 7.57% 1674053
chr2 17372090 7.17% 1561762
chr3 13716900 6.92% 1237338
chr4 10963700 5.76% 999367
chr5 11844490 6.52% 1068376
chr6 11306310 6.62% 1022984
chr7 11293080 7.09% 1013283
chr8 9813830 6.76% 885273
chr9 8760380 6.33% 782224
chr10 10143160 7.58% 907839
chr11 10960510 8.11% 972778
chr12 10426360 7.82% 930315
chr13 5689190 4.97% 518973
chr14 6584790 6.15% 590259
chr15 6662830 6.53% 594091
chr16 7439230 8.23% 654803
chr17 8834880 10.61% 769613
chr18 5148340 6.41% 464552
chr19 6526640 11.13% 567519
chr20 5980690 9.28% 527116
chr21 2422150 5.19% 217328
chr22 4347590 8.56% 376060
chrX 5893500 3.78% 548816
chrY 18870 0.03% 1716
GL000009.2 1340 0.66% 129
GL000194.1 7660 4.00% 669
GL000195.1 3850 2.11% 332
GL000205.2 9750 5.25% 875
GL000213.1 280 0.17% 28
GL000218.1 2940 1.82% 277
GL000219.1 7780 4.34% 712
KI270711.1 540 1.28% 51
KI270713.1 1390 3.41% 126
KI270721.1 340 0.34% 32
KI270726.1 40 0.09% 3
KI270727.1 760 0.17% 73
KI270728.1 5650 0.30% 540
KI270731.1 400 0.27% 38
KI270734.1 440 0.27% 41
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 18890364 10 130 11.17 10
global segment-length histogram

Files

Filename Size md5
SN_SEMA5A_GABA.bw 144.18 MB 1f401095204c1d2720199c145df00a2b
genomic_resource.yaml 1.11 KB f63aaa3329ebfad82625fcdfd16d49d5
statistics/