Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/SN_SOX6_Dopa/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for SN_SOX6_Dopa cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: SN_SOX6_Dopa
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_SN_SOX6_Dopa float

johansen2025Crossspecies_atac_human_SN_SOX6_Dopa
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_SN_SOX6_Dopa [0.647, 269]
n
243,658,010
mean
0.82
sd
0.609

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2436580107.40% 21646877
chr1 20545790 8.25% 1816201
chr2 19847080 8.19% 1769952
chr3 16413100 8.28% 1465262
chr4 13291280 6.99% 1200649
chr5 14437340 7.95% 1290624
chr6 13815150 8.09% 1235174
chr7 13005560 8.16% 1158338
chr8 11775710 8.11% 1053992
chr9 10413570 7.52% 920081
chr10 12141920 9.07% 1075063
chr11 12564880 9.30% 1106211
chr12 11827830 8.87% 1050889
chr13 6746260 5.90% 609431
chr14 7810860 7.30% 693086
chr15 7282520 7.14% 644600
chr16 7834310 8.67% 687473
chr17 9575240 11.50% 829474
chr18 6423930 7.99% 573017
chr19 7391160 12.61% 636817
chr20 6648950 10.32% 582689
chr21 2819630 6.04% 250872
chr22 4275090 8.41% 370054
chrX 6627640 4.25% 613404
chrY 96920 0.17% 9344
GL000009.2 1550 0.77% 151
GL000194.1 8050 4.20% 710
GL000195.1 4820 2.64% 425
GL000205.2 12780 6.89% 1120
GL000213.1 260 0.16% 24
GL000218.1 2880 1.79% 273
GL000219.1 8340 4.65% 773
KI270711.1 720 1.71% 68
KI270713.1 2450 6.01% 214
KI270721.1 470 0.47% 44
KI270726.1 40 0.09% 4
KI270727.1 610 0.14% 59
KI270728.1 2370 0.13% 227
KI270731.1 380 0.25% 34
KI270734.1 570 0.35% 54
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 21646877 10 120 11.26 10
global segment-length histogram

Files

Filename Size md5
SN_SOX6_Dopa.bw 156.73 MB a9a30af63de1dfde79ea672c38106e36
genomic_resource.yaml 1.1 KB 47c4a1347f16200a215b450419ee891d
statistics/