Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/STH_PVALB-PITX2_Glut/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for STH_PVALB-PITX2_Glut cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: STH_PVALB-PITX2_Glut
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_STH_PVALB-PITX2_Glut float

johansen2025Crossspecies_atac_human_STH_PVALB-PITX2_Glut
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_STH_PVALB-PITX2_Glut [0.521, 424]
n
377,365,610
mean
0.694
sd
0.513

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 37736561011.46% 32507353
chr1 32567890 13.08% 2787360
chr2 31043480 12.82% 2679799
chr3 25903850 13.06% 2235717
chr4 21189080 11.14% 1853656
chr5 21802900 12.01% 1891350
chr6 21332370 12.49% 1849811
chr7 20508230 12.87% 1766446
chr8 18436030 12.70% 1594691
chr9 15975830 11.54% 1369397
chr10 18190490 13.60% 1562484
chr11 19296100 14.28% 1649418
chr12 17899160 13.43% 1541485
chr13 11062140 9.67% 966802
chr14 12086300 11.29% 1039521
chr15 11514870 11.29% 986469
chr16 12400070 13.73% 1053025
chr17 13517690 16.24% 1143327
chr18 9931180 12.36% 856611
chr19 9925230 16.93% 838303
chr20 9915780 15.39% 842956
chr21 4359150 9.33% 377073
chr22 6504700 12.80% 545770
chrX 11766570 7.54% 1054052
chrY 142620 0.25% 13625
GL000009.2 2140 1.06% 211
GL000194.1 12310 6.43% 1061
GL000195.1 6440 3.52% 573
GL000205.2 22520 12.13% 1894
GL000213.1 290 0.18% 29
GL000218.1 8590 5.33% 760
GL000219.1 21320 11.90% 1839
KI270711.1 1080 2.56% 96
KI270713.1 2820 6.92% 250
KI270721.1 220 0.22% 21
KI270726.1 150 0.34% 15
KI270727.1 1220 0.27% 111
KI270728.1 13440 0.72% 1221
KI270731.1 420 0.28% 36
KI270734.1 940 0.57% 88
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 32507353 10 120 11.61 10
global segment-length histogram

Files

Filename Size md5
STH_PVALB-PITX2_Glut.bw 205.69 MB 0a228a84a8c4b4474f43f33fad030b6e
genomic_resource.yaml 1.13 KB 904f2b005f0ed3a30a9a7540bebf9774
statistics/