Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/STR-BF_TAC3-PLPP4-LHX8_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for STR-BF_TAC3-PLPP4-LHX8_GABA cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: STR-BF_TAC3-PLPP4-LHX8_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_STR-BF_TAC3-PLPP4-LHX8_GABA float

johansen2025Crossspecies_atac_human_STR-BF_TAC3-PLPP4-LHX8_GABA
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_STR-BF_TAC3-PLPP4-LHX8_GABA [0.0581, 303]
n
1,236,267,948
mean
0.154
sd
0.287

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 123626794837.56% 101643481
chr1 104121570 41.82% 8567516
chr2 103257720 42.63% 8467732
chr3 84663800 42.70% 6944020
chr4 71202180 37.43% 5837811
chr5 73408890 40.44% 6024454
chr6 70961150 41.54% 5817003
chr7 67490670 42.35% 5543186
chr8 60976390 42.01% 4996854
chr9 51101600 36.92% 4198799
chr10 59540850 44.50% 4888831
chr11 60958610 45.13% 5035009
chr12 59580740 44.71% 4897649
chr13 38224000 33.42% 3134772
chr14 39614770 37.01% 3257368
chr15 37802190 37.06% 3106920
chr16 38641890 42.77% 3180539
chr17 42293810 50.80% 3504389
chr18 32408770 40.32% 2654499
chr19 30030390 51.23% 2496658
chr20 31662480 49.13% 2609326
chr21 14761210 31.60% 1211279
chr22 20295550 39.94% 1686528
chrX 41052580 26.31% 3392447
chrY 1951340 3.41% 167658
GL000009.2 11250 5.58% 996
GL000194.1 31930 16.68% 2671
GL000195.1 23850 13.04% 1988
GL000205.2 56980 30.70% 4663
GL000213.1 1350 0.82% 118
GL000218.1 23310 14.47% 1931
GL000219.1 54558 30.45% 4493
KI270711.1 4880 11.56% 421
KI270713.1 11530 28.30% 980
KI270721.1 1870 1.86% 165
KI270726.1 400 0.91% 36
KI270727.1 6850 1.53% 582
KI270728.1 28810 1.54% 2550
KI270731.1 2140 1.42% 187
KI270734.1 5090 3.08% 453
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 101643481 10 170 12.16 10
global segment-length histogram

Files

Filename Size md5
STR-BF_TAC3-PLPP4-LHX8_GABA.bw 646.39 MB 5a5ef48886dffde659b0f2fc8f8ab800
genomic_resource.yaml 1.16 KB 6835ab477839f5fa9205501d561ffd61
statistics/