Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/STR_Cholinergic_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for STR_Cholinergic_GABA cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: STR_Cholinergic_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_STR_Cholinergic_GABA float

johansen2025Crossspecies_atac_human_STR_Cholinergic_GABA
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_STR_Cholinergic_GABA [1.13, 206]
n
181,132,550
mean
1.35
sd
0.702

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1811325505.50% 16353362
chr1 15479720 6.22% 1392139
chr2 15117850 6.24% 1369680
chr3 12403980 6.26% 1123645
chr4 10001740 5.26% 915354
chr5 10490040 5.78% 951935
chr6 10158810 5.95% 922521
chr7 9821820 6.16% 886856
chr8 8919610 6.15% 809009
chr9 7370290 5.33% 665000
chr10 8791860 6.57% 793057
chr11 9236460 6.84% 828567
chr12 8911570 6.69% 802178
chr13 5183090 4.53% 474394
chr14 5879610 5.49% 529520
chr15 5561960 5.45% 500818
chr16 5983730 6.62% 533805
chr17 7024580 8.44% 620720
chr18 4330030 5.39% 394873
chr19 5049210 8.61% 444563
chr20 5015230 7.78% 446571
chr21 2149280 4.60% 194308
chr22 3346040 6.58% 294754
chrX 4781080 3.06% 447064
chrY 97420 0.17% 9514
GL000009.2 330 0.16% 32
GL000194.1 2830 1.48% 266
GL000195.1 2440 1.33% 219
GL000205.2 6080 3.28% 562
GL000213.1 40 0.02% 4
GL000218.1 2540 1.58% 241
GL000219.1 6840 3.82% 606
KI270711.1 670 1.59% 64
KI270713.1 1950 4.79% 165
KI270721.1 240 0.24% 22
KI270726.1 20 0.05% 2
KI270727.1 380 0.08% 35
KI270728.1 2310 0.12% 221
KI270731.1 240 0.16% 21
KI270734.1 630 0.38% 57
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 16353362 10 130 11.08 10
global segment-length histogram

Files

Filename Size md5
STR_Cholinergic_GABA.bw 132.36 MB d2d9ee9c2b4f106f1f7c24d4dd55cfe8
genomic_resource.yaml 1.13 KB 367873f946095ec53bfc12a29cd2079b
statistics/