Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/STR_D1D2_Hybrid_MSN/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for STR_D1D2_Hybrid_MSN cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: STR_D1D2_Hybrid_MSN
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_STR_D1D2_Hybrid_MSN float

johansen2025Crossspecies_atac_human_STR_D1D2_Hybrid_MSN
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_STR_D1D2_Hybrid_MSN [0.00714, 367]
n
2,488,778,168
mean
0.078
sd
0.22

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 248877816875.61% 227121821
chr1 198120160 79.58% 18182482
chr2 208671710 86.16% 19034244
chr3 174258440 87.88% 15929239
chr4 164088160 86.26% 14883053
chr5 155142220 85.46% 14127736
chr6 149157830 87.33% 13603025
chr7 136084820 85.40% 12446385
chr8 125246790 86.29% 11414380
chr9 99498960 71.90% 9099780
chr10 115362260 86.22% 10539060
chr11 116215910 86.03% 10650124
chr12 117021760 87.80% 10732851
chr13 84453000 73.85% 7673189
chr14 78218180 73.07% 7168872
chr15 70124690 68.76% 6435716
chr16 68143540 75.43% 6294828
chr17 70652470 84.86% 6555141
chr18 66318440 82.51% 6050307
chr19 50187960 85.62% 4654677
chr20 55186310 85.63% 5076791
chr21 30284020 64.83% 2765305
chr22 31697030 62.37% 2960060
chrX 116681860 74.78% 10193756
chrY 7234730 12.64% 587545
GL000009.2 52890 26.22% 4384
GL000194.1 87210 45.55% 7729
GL000195.1 66200 36.20% 5862
GL000205.2 108750 58.60% 10037
GL000213.1 6720 4.09% 562
GL000218.1 79710 49.46% 6723
GL000219.1 118288 66.01% 10577
KI270711.1 10810 25.61% 935
KI270713.1 21760 53.41% 1948
KI270721.1 5880 5.86% 489
KI270726.1 5710 13.05% 473
KI270727.1 13650 3.05% 1183
KI270728.1 123000 6.57% 10146
KI270731.1 10240 6.79% 854
KI270734.1 16100 9.75% 1373
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 227121821 10 120 10.96 10
global segment-length histogram

Files

Filename Size md5
STR_D1D2_Hybrid_MSN.bw 1.21 GB 6f74e6ab6d8711baa5f09bd60da69417
genomic_resource.yaml 1.13 KB dcd8a0f56b896bfb5d625820aa968dfc
statistics/