Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/STR_FS_PTHLH-PVALB_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for STR_FS_PTHLH-PVALB_GABA cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: STR_FS_PTHLH-PVALB_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_STR_FS_PTHLH-PVALB_GABA float

johansen2025Crossspecies_atac_human_STR_FS_PTHLH-PVALB_GABA
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_STR_FS_PTHLH-PVALB_GABA [0.0113, 345]
n
2,318,010,378
mean
0.0879
sd
0.218

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 231801037870.42% 206536335
chr1 185977970 74.70% 16678670
chr2 194860050 80.46% 17371257
chr3 161780670 81.59% 14407830
chr4 150919750 79.34% 13304172
chr5 143924870 79.28% 12784905
chr6 138299570 80.97% 12282551
chr7 126560440 79.42% 11290491
chr8 117007580 80.62% 10418096
chr9 93208010 67.35% 8336000
chr10 108110870 80.80% 9655419
chr11 108854480 80.58% 9751812
chr12 109128600 81.88% 9766286
chr13 78067990 68.26% 6901919
chr14 72807380 68.02% 6498722
chr15 66141400 64.85% 5938928
chr16 64457960 71.35% 5821841
chr17 67043110 80.53% 6089527
chr18 61800730 76.89% 5500080
chr19 47693190 81.36% 4334444
chr20 52628970 81.67% 4754035
chr21 28355800 60.71% 2529360
chr22 30377980 59.78% 2785250
chrX 103418820 66.28% 8794384
chrY 5957890 10.41% 486350
GL000009.2 42130 20.89% 3463
GL000194.1 71290 37.23% 6162
GL000195.1 58030 31.73% 5114
GL000205.2 100930 54.38% 9186
GL000213.1 4690 2.86% 404
GL000218.1 64190 39.83% 5401
GL000219.1 109588 61.15% 9515
KI270711.1 10350 24.52% 878
KI270713.1 21140 51.88% 1870
KI270721.1 5130 5.11% 431
KI270726.1 3550 8.12% 298
KI270727.1 14390 3.21% 1231
KI270728.1 100340 5.36% 8289
KI270731.1 7870 5.22% 671
KI270734.1 12680 7.68% 1093
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 206536335 8 140 11.22 10
global segment-length histogram

Files

Filename Size md5
STR_FS_PTHLH-PVALB_GABA.bw 1.11 GB 8c765e9c7ec2e8e1e544048e5c20ff91
genomic_resource.yaml 1.15 KB 95922dddf4a98ac65b60db3965bac6fa
statistics/