Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/STR_LYPD6-RSPO2_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for STR_LYPD6-RSPO2_GABA cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: STR_LYPD6-RSPO2_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_STR_LYPD6-RSPO2_GABA float

johansen2025Crossspecies_atac_human_STR_LYPD6-RSPO2_GABA
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_STR_LYPD6-RSPO2_GABA [0.0928, 542]
n
1,011,439,500
mean
0.193
sd
0.326

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 101143950030.73% 82552366
chr1 85107490 34.19% 6933531
chr2 83217490 34.36% 6790742
chr3 71161820 35.89% 5801099
chr4 61120370 32.13% 4996862
chr5 61333260 33.79% 5007845
chr6 58750900 34.40% 4794997
chr7 55696420 34.95% 4542531
chr8 50671880 34.91% 4132780
chr9 41805070 30.21% 3410657
chr10 47815530 35.74% 3895325
chr11 49500970 36.64% 4043387
chr12 49611790 37.23% 4047561
chr13 32637790 28.54% 2664177
chr14 31763790 29.67% 2588263
chr15 29959530 29.37% 2438129
chr16 30419400 33.67% 2472246
chr17 33191700 39.87% 2704855
chr18 26531410 33.01% 2163397
chr19 23743190 40.51% 1942426
chr20 24739180 38.39% 2009585
chr21 11990530 25.67% 976529
chr22 15978720 31.44% 1298254
chrX 33891920 21.72% 2824648
chrY 622150 1.09% 57678
GL000009.2 6540 3.24% 596
GL000194.1 20100 10.50% 1659
GL000195.1 17100 9.35% 1423
GL000205.2 40570 21.86% 3211
GL000213.1 820 0.50% 76
GL000218.1 14060 8.72% 1216
GL000219.1 39070 21.80% 3238
KI270711.1 3180 7.53% 267
KI270713.1 8410 20.64% 690
KI270721.1 1320 1.32% 116
KI270726.1 120 0.27% 12
KI270727.1 3770 0.84% 344
KI270728.1 17300 0.92% 1581
KI270731.1 1860 1.23% 167
KI270734.1 2980 1.81% 266
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 82552366 10 140 12.25 10
global segment-length histogram

Files

Filename Size md5
STR_LYPD6-RSPO2_GABA.bw 560.68 MB 891c7e106531a0c72ecc28d4c4bd57d3
genomic_resource.yaml 1.13 KB 29c83f31e3c802016d8e3d839ba0c6eb
statistics/