Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/STR_SST-ADARB2_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for STR_SST-ADARB2_GABA cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: STR_SST-ADARB2_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_STR_SST-ADARB2_GABA float

johansen2025Crossspecies_atac_human_STR_SST-ADARB2_GABA
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_STR_SST-ADARB2_GABA [0.673, 288]
n
272,842,520
mean
0.853
sd
0.576

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2728425208.29% 24104196
chr1 24005320 9.64% 2106249
chr2 22212510 9.17% 1971283
chr3 18292950 9.23% 1623854
chr4 14875490 7.82% 1336509
chr5 15617300 8.60% 1390361
chr6 15093090 8.84% 1345253
chr7 14840600 9.31% 1312711
chr8 12989600 8.95% 1154787
chr9 11456620 8.28% 1008380
chr10 13142280 9.82% 1159790
chr11 14055670 10.40% 1230195
chr12 13225440 9.92% 1165460
chr13 7862110 6.87% 705248
chr14 8920920 8.33% 786448
chr15 8587000 8.42% 754029
chr16 9201960 10.19% 800736
chr17 10469380 12.57% 903709
chr18 6831340 8.50% 607978
chr19 7757320 13.23% 667349
chr20 7401050 11.48% 644394
chr21 3143510 6.73% 279331
chr22 5117100 10.07% 438004
chrX 7554740 4.84% 694136
chrY 138040 0.24% 13365
GL000009.2 1030 0.51% 103
GL000194.1 7410 3.87% 651
GL000195.1 4720 2.58% 422
GL000205.2 11280 6.08% 1001
GL000213.1 140 0.09% 14
GL000218.1 3150 1.95% 305
GL000219.1 11830 6.60% 1063
KI270711.1 650 1.54% 61
KI270713.1 2310 5.67% 202
KI270721.1 370 0.37% 34
KI270726.1 40 0.09% 4
KI270727.1 600 0.13% 55
KI270728.1 6590 0.35% 621
KI270731.1 290 0.19% 29
KI270734.1 770 0.47% 72
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 24104196 10 120 11.32 10
global segment-length histogram

Files

Filename Size md5
STR_SST-ADARB2_GABA.bw 167.85 MB ac400279085f18ad46f9af6800940c1b
genomic_resource.yaml 1.13 KB a2fe2e33cc798493beae39544e846831
statistics/