Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/STR_SST-CHODL_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for STR_SST-CHODL_GABA cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: STR_SST-CHODL_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_STR_SST-CHODL_GABA float

johansen2025Crossspecies_atac_human_STR_SST-CHODL_GABA
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_STR_SST-CHODL_GABA [0.0343, 330]
n
1,705,350,738
mean
0.124
sd
0.251

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 170535073851.81% 142754585
chr1 140627660 56.49% 11833191
chr2 142955920 59.03% 11937274
chr3 119097930 60.06% 9957048
chr4 105222900 55.32% 8708738
chr5 103394550 56.95% 8609137
chr6 99887840 58.48% 8317713
chr7 93225710 58.51% 7804749
chr8 85281280 58.76% 7116423
chr9 69909670 50.51% 5870383
chr10 80299620 60.02% 6711026
chr11 82448280 61.03% 6953048
chr12 81611640 61.24% 6848573
chr13 55353760 48.40% 4597744
chr14 53990520 50.44% 4521269
chr15 50235470 49.25% 4220445
chr16 50760310 56.19% 4298034
chr17 53926590 64.77% 4596673
chr18 45305250 56.37% 3778045
chr19 37635670 64.21% 3208619
chr20 41496770 64.39% 3518549
chr21 20668660 44.25% 1725190
chr22 24924560 49.05% 2135922
chrX 63545330 40.72% 5189447
chrY 3178070 5.55% 266512
GL000009.2 17920 8.88% 1522
GL000194.1 38440 20.08% 3154
GL000195.1 37180 20.33% 3158
GL000205.2 77040 41.51% 6561
GL000213.1 2530 1.54% 225
GL000218.1 31530 19.57% 2613
GL000219.1 74978 41.84% 6156
KI270711.1 6010 14.24% 518
KI270713.1 14740 36.18% 1246
KI270721.1 2600 2.59% 227
KI270726.1 1580 3.61% 143
KI270727.1 6560 1.46% 565
KI270728.1 44450 2.37% 3773
KI270731.1 3880 2.57% 339
KI270734.1 7340 4.45% 633
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 142754585 8 150 11.95 10
global segment-length histogram

Files

Filename Size md5
STR_SST-CHODL_GABA.bw 833.95 MB be0ba72475d10da3c213b34fc3163b49
genomic_resource.yaml 1.13 KB 236a133dba5b090ad9414817b7251655
statistics/