Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/STR_SST-RSPO2_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for STR_SST-RSPO2_GABA cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: STR_SST-RSPO2_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_STR_SST-RSPO2_GABA float

johansen2025Crossspecies_atac_human_STR_SST-RSPO2_GABA
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_STR_SST-RSPO2_GABA [0.0815, 462]
n
1,041,553,080
mean
0.175
sd
0.317

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 104155308031.64% 85002298
chr1 87451960 35.13% 7126749
chr2 85671820 35.37% 6985659
chr3 73050700 36.84% 5955500
chr4 62645890 32.93% 5118964
chr5 63223480 34.83% 5160811
chr6 60429510 35.38% 4933306
chr7 56972400 35.75% 4646231
chr8 51797710 35.69% 4222588
chr9 43613090 31.51% 3556905
chr10 48563750 36.30% 3957059
chr11 50691020 37.52% 4140613
chr12 50820720 38.13% 4145614
chr13 33244910 29.07% 2713507
chr14 33652160 31.44% 2744082
chr15 30908020 30.30% 2511853
chr16 31817350 35.22% 2585888
chr17 34358770 41.27% 2803431
chr18 27694520 34.46% 2256243
chr19 24563420 41.90% 2011809
chr20 25801210 40.04% 2096583
chr21 12716060 27.22% 1034940
chr22 16321240 32.12% 1327270
chrX 34512370 22.12% 2873925
chrY 845000 1.48% 77042
GL000009.2 7550 3.74% 693
GL000194.1 21530 11.24% 1812
GL000195.1 16910 9.25% 1442
GL000205.2 41780 22.51% 3293
GL000213.1 900 0.55% 89
GL000218.1 16820 10.44% 1447
GL000219.1 41090 22.93% 3443
KI270711.1 3310 7.84% 292
KI270713.1 9060 22.24% 757
KI270721.1 1320 1.32% 124
KI270726.1 160 0.37% 15
KI270727.1 3410 0.76% 311
KI270728.1 16860 0.90% 1547
KI270731.1 1860 1.23% 163
KI270734.1 3440 2.08% 298
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 85002298 10 130 12.25 10
global segment-length histogram

Files

Filename Size md5
STR_SST-RSPO2_GABA.bw 568.25 MB 80960c10e31aac3a2f90e31bf36ccce7
genomic_resource.yaml 1.13 KB 090de3bcd513208f77b519056cb29ddb
statistics/