Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/STR_TAC3-PLPP4_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for STR_TAC3-PLPP4_GABA cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: STR_TAC3-PLPP4_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_STR_TAC3-PLPP4_GABA float

johansen2025Crossspecies_atac_human_STR_TAC3-PLPP4_GABA
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_STR_TAC3-PLPP4_GABA [0.0119, 322]
n
2,163,810,798
mean
0.082
sd
0.227

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 216381079865.74% 189235144
chr1 174761680 70.20% 15391980
chr2 181657120 75.00% 15869387
chr3 150549950 75.92% 13138902
chr4 137918140 72.51% 11874158
chr5 133150150 73.35% 11573865
chr6 128542850 75.26% 11195289
chr7 118659190 74.47% 10393805
chr8 108868040 75.01% 9491698
chr9 87816990 63.45% 7720508
chr10 101783810 76.07% 8939534
chr11 102002010 75.51% 8979203
chr12 102092420 76.60% 8952016
chr13 72133360 63.07% 6240843
chr14 68553000 64.04% 6017097
chr15 62891750 61.66% 5559904
chr16 61506600 68.08% 5469675
chr17 64090660 76.98% 5737577
chr18 57963890 72.12% 5058429
chr19 45166960 77.05% 4044922
chr20 50130600 77.79% 4456555
chr21 26446530 56.62% 2311589
chr22 29335940 57.73% 2655272
chrX 91152020 58.42% 7612445
chrY 6060840 10.59% 500979
GL000009.2 39760 19.71% 3333
GL000194.1 65400 34.16% 5651
GL000195.1 47340 25.88% 4086
GL000205.2 90940 49.00% 8123
GL000213.1 5300 3.23% 457
GL000218.1 55830 34.65% 4653
GL000219.1 104528 58.33% 9096
KI270711.1 9860 23.36% 834
KI270713.1 19460 47.76% 1749
KI270721.1 4240 4.23% 341
KI270726.1 3400 7.77% 291
KI270727.1 21010 4.69% 1832
KI270728.1 88200 4.71% 7269
KI270731.1 7460 4.95% 648
KI270734.1 13570 8.22% 1149
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 189235144 10 130 11.43 10
global segment-length histogram

Files

Filename Size md5
STR_TAC3-PLPP4_GABA.bw 1.03 GB 9f1fa4a0d5f8f310b456fb1c402fc899
genomic_resource.yaml 1.13 KB fe87df92c5c62059e0112fc88ec875b0
statistics/