Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/STRd_Cholinergic_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for STRd_Cholinergic_GABA cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: STRd_Cholinergic_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_STRd_Cholinergic_GABA float

johansen2025Crossspecies_atac_human_STRd_Cholinergic_GABA
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_STRd_Cholinergic_GABA [1.07, 341]
n
184,275,550
mean
1.28
sd
0.706

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1842755505.60% 16565431
chr1 15443000 6.20% 1384318
chr2 14818490 6.12% 1337113
chr3 12724940 6.42% 1147628
chr4 10001960 5.26% 913324
chr5 10227460 5.63% 927560
chr6 10138440 5.94% 918461
chr7 10182130 6.39% 915564
chr8 8980710 6.19% 812158
chr9 7619550 5.51% 683837
chr10 8770610 6.56% 788455
chr11 9444640 6.99% 842391
chr12 9361540 7.02% 838424
chr13 5228780 4.57% 477423
chr14 6080880 5.68% 545055
chr15 5689020 5.58% 509979
chr16 6149840 6.81% 544652
chr17 7470660 8.97% 654045
chr18 4486600 5.58% 407350
chr19 5684580 9.70% 495920
chr20 5040850 7.82% 447502
chr21 2279460 4.88% 205036
chr22 3545280 6.98% 309373
chrX 4745510 3.04% 444457
chrY 122810 0.21% 11950
GL000009.2 1040 0.52% 104
GL000194.1 5390 2.82% 477
GL000195.1 3430 1.88% 318
GL000205.2 8070 4.35% 738
GL000213.1 160 0.10% 15
GL000218.1 2550 1.58% 243
GL000219.1 6890 3.84% 613
KI270711.1 240 0.57% 24
KI270713.1 2140 5.25% 190
KI270721.1 150 0.15% 15
KI270726.1 20 0.05% 2
KI270727.1 640 0.14% 57
KI270728.1 5960 0.32% 555
KI270731.1 390 0.26% 36
KI270734.1 740 0.45% 69
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 16565431 10 110 11.12 10
global segment-length histogram

Files

Filename Size md5
STRd_Cholinergic_GABA.bw 133.15 MB 5e90d2b3fae49834124bba578854021a
genomic_resource.yaml 1.14 KB ad81ae0c15774c4816c2e5c7a46e1867
statistics/