Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/STRd_D1_Matrix_MSN/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for STRd_D1_Matrix_MSN cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: STRd_D1_Matrix_MSN
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_STRd_D1_Matrix_MSN float

johansen2025Crossspecies_atac_human_STRd_D1_Matrix_MSN
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_STRd_D1_Matrix_MSN [0.00163, 397]
n
2,754,752,567
mean
0.0741
sd
0.22

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 275475256783.69% 267366894
chr1 217053450 87.19% 21115356
chr2 230383840 95.12% 22380673
chr3 191210060 96.43% 18586979
chr4 182653060 96.02% 17712996
chr5 171557900 94.50% 16657921
chr6 164461980 96.29% 15971002
chr7 149984910 94.13% 14568139
chr8 138105950 95.15% 13407010
chr9 109961620 79.46% 10672714
chr10 127172690 95.05% 12350752
chr11 127648500 94.49% 12410885
chr12 127973330 96.02% 12455895
chr13 93536640 81.79% 9079081
chr14 85660890 80.02% 8333474
chr15 76890130 75.39% 7480118
chr16 74290560 82.24% 7231459
chr17 76218420 91.55% 7440927
chr18 72955890 90.77% 7079298
chr19 54240320 92.53% 5303129
chr20 60073660 93.22% 5845621
chr21 33560050 71.85% 3259397
chr22 34061110 67.03% 3328070
chrX 140819280 90.25% 13421529
chrY 13165790 23.01% 1172964
GL000009.2 104389 51.75% 9111
GL000194.1 118890 62.09% 11100
GL000195.1 88810 48.56% 8228
GL000205.2 128170 69.06% 12228
GL000213.1 16200 9.86% 1388
GL000218.1 116760 72.46% 10772
GL000219.1 137528 76.75% 13314
KI270711.1 17200 40.75% 1573
KI270713.1 28460 69.85% 2667
KI270721.1 11150 11.11% 964
KI270726.1 16980 38.82% 1410
KI270727.1 32790 7.32% 2903
KI270728.1 244370 13.05% 21346
KI270731.1 20780 13.78% 1846
KI270734.1 30060 18.21% 2655
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 267366894 8 100 10.3 10
global segment-length histogram

Files

Filename Size md5
STRd_D1_Matrix_MSN.bw 1.55 GB c63d248d3061fb4581797c16fec2e174
genomic_resource.yaml 1.13 KB 89833c29abb762b0e8df1ea8402f4c15
statistics/