Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/STRd_D1_Striosome_MSN/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for STRd_D1_Striosome_MSN cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: STRd_D1_Striosome_MSN
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_STRd_D1_Striosome_MSN float

johansen2025Crossspecies_atac_human_STRd_D1_Striosome_MSN
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_STRd_D1_Striosome_MSN [0.00516, 394]
n
2,579,489,158
mean
0.0761
sd
0.226

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 257948915878.37% 239401358
chr1 204507560 82.15% 19065105
chr2 216216210 89.27% 20075876
chr3 179957410 90.75% 16728829
chr4 170465030 89.62% 15756133
chr5 160903230 88.63% 14926928
chr6 154233770 90.30% 14304054
chr7 140758850 88.34% 13091274
chr8 129596400 89.29% 12014913
chr9 102946370 74.39% 9567885
chr10 119447350 89.27% 11096474
chr11 120146190 88.94% 11182180
chr12 120793440 90.63% 11257237
chr13 87563240 76.57% 8104133
chr14 80708450 75.40% 7512118
chr15 72478170 71.06% 6760823
chr16 70217470 77.73% 6579948
chr17 72562070 87.15% 6827109
chr18 68488710 85.21% 6350467
chr19 51863250 88.48% 4895785
chr20 56841280 88.20% 5301856
chr21 31470380 67.37% 2926669
chr22 32504220 63.96% 3075998
chrX 124871440 80.02% 11172780
chrY 9127320 15.95% 753899
GL000009.2 64890 32.17% 5475
GL000194.1 97290 50.81% 8769
GL000195.1 71760 39.24% 6479
GL000205.2 112470 60.60% 10565
GL000213.1 8380 5.10% 701
GL000218.1 89380 55.46% 7785
GL000219.1 126728 70.72% 11713
KI270711.1 11690 27.69% 1015
KI270713.1 23370 57.36% 2129
KI270721.1 6700 6.68% 554
KI270726.1 8250 18.86% 695
KI270727.1 17460 3.90% 1538
KI270728.1 151860 8.11% 12752
KI270731.1 12380 8.21% 1069
KI270734.1 18740 11.35% 1646
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 239401358 8 120 10.77 10
global segment-length histogram

Files

Filename Size md5
STRd_D1_Striosome_MSN.bw 1.3 GB 8351ba91ba2e19571b9192542bab6b10
genomic_resource.yaml 1.14 KB fd10379a6970cc547a438af17f66f7e9
statistics/