Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/STRd_D2_Matrix_MSN/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for STRd_D2_Matrix_MSN cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: STRd_D2_Matrix_MSN
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_STRd_D2_Matrix_MSN float

johansen2025Crossspecies_atac_human_STRd_D2_Matrix_MSN
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_STRd_D2_Matrix_MSN [0.00147, 365]
n
2,758,784,097
mean
0.0712
sd
0.218

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 275878409783.81% 268057846
chr1 217358370 87.31% 21167245
chr2 230703170 95.26% 22435786
chr3 191501830 96.57% 18637931
chr4 182898610 96.15% 17756948
chr5 171785690 94.63% 16695976
chr6 164721730 96.44% 16016226
chr7 150202460 94.26% 14607395
chr8 138276530 95.27% 13437736
chr9 109987650 79.47% 10687150
chr10 127353360 95.18% 12382220
chr11 127754300 94.57% 12429116
chr12 128146770 96.15% 12488817
chr13 93682380 81.92% 9103179
chr14 85789450 80.14% 8355563
chr15 77018860 75.52% 7504010
chr16 74413660 82.37% 7250928
chr17 76313480 91.66% 7457680
chr18 73038560 90.87% 7095538
chr19 54322630 92.67% 5317623
chr20 60137870 93.32% 5857918
chr21 33622750 71.98% 3269212
chr22 34125720 67.15% 3338471
chrX 141010020 90.37% 13450171
chrY 13486000 23.57% 1211323
GL000009.2 108659 53.87% 9565
GL000194.1 119450 62.39% 11220
GL000195.1 89940 49.18% 8382
GL000205.2 129050 69.53% 12332
GL000213.1 16620 10.12% 1442
GL000218.1 119430 74.11% 11014
GL000219.1 137688 76.84% 13342
KI270711.1 17640 41.79% 1588
KI270713.1 28810 70.71% 2700
KI270721.1 11370 11.33% 1020
KI270726.1 16570 37.88% 1373
KI270727.1 34240 7.64% 2976
KI270728.1 250550 13.38% 22067
KI270731.1 20890 13.86% 1881
KI270734.1 31340 18.99% 2782
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 268057846 8 120 10.29 10
global segment-length histogram

Files

Filename Size md5
STRd_D2_Matrix_MSN.bw 1.55 GB 95057f0d980df6c1457d2ee7848b0186
genomic_resource.yaml 1.13 KB 91d5d0772c7e257d4ec36ef19a6840db
statistics/