Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/STRd_D2_StrioMat_Hybrid_MSN/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for STRd_D2_StrioMat_Hybrid_MSN cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: STRd_D2_StrioMat_Hybrid_MSN
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_STRd_D2_StrioMat_Hybrid_MSN float

johansen2025Crossspecies_atac_human_STRd_D2_StrioMat_Hybrid_MSN
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_STRd_D2_StrioMat_Hybrid_MSN [0.0259, 409]
n
1,898,914,368
mean
0.114
sd
0.262

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 189891436857.69% 160384254
chr1 153968000 61.85% 13070215
chr2 159255430 65.76% 13432864
chr3 132485930 66.81% 11173107
chr4 122114480 64.20% 10231090
chr5 116855840 64.37% 9821273
chr6 112473040 65.85% 9468773
chr7 104253820 65.43% 8816884
chr8 95015450 65.47% 7992557
chr9 76190200 55.05% 6437154
chr10 88661300 66.27% 7483755
chr11 90380480 66.91% 7676139
chr12 90768190 68.11% 7697811
chr13 63075060 55.15% 5283252
chr14 60109670 56.15% 5089824
chr15 54774950 53.71% 4654473
chr16 54413380 60.23% 4663858
chr17 56968240 68.42% 4897947
chr18 50586020 62.94% 4260291
chr19 41103690 70.12% 3550692
chr20 43711330 67.83% 3725686
chr21 23170770 49.61% 1953852
chr22 26507290 52.16% 2298325
chrX 77893730 49.92% 6355763
chrY 3709540 6.48% 308828
GL000009.2 27790 13.78% 2335
GL000194.1 60720 31.71% 5174
GL000195.1 44200 24.17% 3788
GL000205.2 87410 47.10% 7654
GL000213.1 3150 1.92% 273
GL000218.1 51540 31.98% 4251
GL000219.1 86308 48.16% 7236
KI270711.1 5710 13.53% 475
KI270713.1 14730 36.15% 1285
KI270721.1 2930 2.92% 241
KI270726.1 2150 4.92% 198
KI270727.1 7250 1.62% 638
KI270728.1 61910 3.31% 5202
KI270731.1 4850 3.22% 419
KI270734.1 7890 4.78% 672
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 160384254 8 170 11.84 10
global segment-length histogram

Files

Filename Size md5
STRd_D2_StrioMat_Hybrid_MSN.bw 914.97 MB 67a7a03429b50f8377de8ed71fb3344f
genomic_resource.yaml 1.16 KB 225c9e70a9a0bf2f34a7c8d7e101c080
statistics/