Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/STRd_D2_Striosome_MSN/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for STRd_D2_Striosome_MSN cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: STRd_D2_Striosome_MSN
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_STRd_D2_Striosome_MSN float

johansen2025Crossspecies_atac_human_STRd_D2_Striosome_MSN
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_STRd_D2_Striosome_MSN [0.00618, 352]
n
2,521,816,328
mean
0.0767
sd
0.226

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 252181632876.61% 231308219
chr1 200643120 80.59% 18506561
chr2 211574080 87.36% 19411811
chr3 176104930 88.81% 16170547
chr4 166344330 87.45% 15178212
chr5 157113130 86.55% 14384789
chr6 150936660 88.37% 13832815
chr7 137761240 86.45% 12669508
chr8 126559240 87.20% 11584692
chr9 100619570 72.70% 9246167
chr10 116778050 87.28% 10717609
chr11 117525680 87.00% 10813118
chr12 118518410 88.93% 10923281
chr13 85527640 74.79% 7812445
chr14 79046610 73.85% 7273669
chr15 71169110 69.78% 6572998
chr16 68988910 76.37% 6404051
chr17 71421760 85.78% 6655924
chr18 66934860 83.28% 6128756
chr19 51230250 87.40% 4797445
chr20 55755150 86.52% 5145807
chr21 30804010 65.95% 2832250
chr22 32156970 63.28% 3021736
chrX 118692660 76.07% 10429358
chrY 8837950 15.44% 726540
GL000009.2 60330 29.91% 5059
GL000194.1 93530 48.85% 8379
GL000195.1 68910 37.68% 6179
GL000205.2 111520 60.09% 10351
GL000213.1 7190 4.38% 618
GL000218.1 86800 53.86% 7554
GL000219.1 123968 69.18% 11351
KI270711.1 10460 24.78% 913
KI270713.1 22310 54.76% 2003
KI270721.1 6370 6.35% 542
KI270726.1 6000 13.72% 504
KI270727.1 15710 3.50% 1365
KI270728.1 129660 6.92% 10809
KI270731.1 11510 7.63% 979
KI270734.1 17740 10.75% 1524
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 231308219 8 130 10.9 10
global segment-length histogram

Files

Filename Size md5
STRd_D2_Striosome_MSN.bw 1.24 GB bfe11df248a8f5913b1242569c320c60
genomic_resource.yaml 1.14 KB 3b272fab01094b11c5a9e8b1c9cf3865
statistics/