Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/STRv_D1_MSN/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for STRv_D1_MSN cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: STRv_D1_MSN
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_STRv_D1_MSN float

johansen2025Crossspecies_atac_human_STRv_D1_MSN
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_STRv_D1_MSN [0.00533, 411]
n
2,590,143,907
mean
0.0785
sd
0.221

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 259014390778.69% 240886880
chr1 205177290 82.41% 19160304
chr2 217286850 89.72% 20222019
chr3 180702190 91.13% 16834595
chr4 171138310 89.97% 15845644
chr5 161441450 88.93% 15004900
chr6 154927220 90.70% 14400612
chr7 141377990 88.72% 13172613
chr8 130200340 89.71% 12102338
chr9 103529880 74.81% 9645819
chr10 119998070 89.69% 11174493
chr11 120501300 89.20% 11233117
chr12 121187630 90.93% 11312014
chr13 87990750 76.94% 8164955
chr14 80989070 75.66% 7554242
chr15 72761570 71.34% 6804697
chr16 70480980 78.02% 6615676
chr17 72754960 87.39% 6853718
chr18 68800210 85.60% 6393242
chr19 51943080 88.61% 4904364
chr20 57141300 88.67% 5346761
chr21 31599710 67.65% 2945732
chr22 32565430 64.08% 3083069
chrX 125914970 80.69% 11303832
chrY 8908770 15.57% 735213
GL000009.2 68629 34.02% 5688
GL000194.1 94720 49.47% 8535
GL000195.1 70800 38.71% 6331
GL000205.2 112190 60.45% 10539
GL000213.1 9180 5.59% 770
GL000218.1 89100 55.29% 7786
GL000219.1 127348 71.07% 11814
KI270711.1 12760 30.23% 1102
KI270713.1 22770 55.88% 2069
KI270721.1 7160 7.14% 608
KI270726.1 7770 17.76% 659
KI270727.1 18990 4.24% 1655
KI270728.1 151230 8.08% 12616
KI270731.1 13100 8.69% 1135
KI270734.1 18840 11.41% 1604
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 240886880 8 120 10.75 10
global segment-length histogram

Files

Filename Size md5
STRv_D1_MSN.bw 1.3 GB 5b41ae530348f68163301facf57537f6
genomic_resource.yaml 1.1 KB e0e6c95438cd2344bdab922d8bf23f17
statistics/