Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/STRv_D1_NUDAP_MSN/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for STRv_D1_NUDAP_MSN cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: STRv_D1_NUDAP_MSN
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_STRv_D1_NUDAP_MSN float

johansen2025Crossspecies_atac_human_STRv_D1_NUDAP_MSN
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_STRv_D1_NUDAP_MSN [0.0126, 320]
n
2,237,074,878
mean
0.0828
sd
0.221

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 223707487867.96% 196334137
chr1 179862580 72.25% 15900940
chr2 187738330 77.52% 16453801
chr3 156337110 78.84% 13708712
chr4 144564330 76.00% 12535718
chr5 138336410 76.20% 12078397
chr6 133247290 78.01% 11649943
chr7 122334470 76.77% 10747141
chr8 112527450 77.53% 9848621
chr9 89860200 64.93% 7908112
chr10 104514920 78.11% 9192362
chr11 105384000 78.01% 9306021
chr12 105679680 79.29% 9310086
chr13 74795450 65.40% 6502620
chr14 70741290 66.09% 6235041
chr15 64221100 62.97% 5687380
chr16 63028170 69.77% 5629215
chr17 65690730 78.90% 5904828
chr18 59459910 73.98% 5195467
chr19 46754770 79.76% 4206270
chr20 50991420 79.12% 4537819
chr21 27312150 58.47% 2397235
chr22 29855040 58.75% 2707431
chrX 97902460 62.74% 8204586
chrY 5343690 9.34% 435705
GL000009.2 40830 20.24% 3340
GL000194.1 69060 36.07% 5928
GL000195.1 59550 32.56% 5174
GL000205.2 102370 55.16% 9252
GL000213.1 4640 2.83% 396
GL000218.1 60910 37.80% 5062
GL000219.1 102418 57.15% 8771
KI270711.1 8480 20.09% 731
KI270713.1 18250 44.79% 1605
KI270721.1 4770 4.75% 400
KI270726.1 2980 6.81% 260
KI270727.1 12720 2.84% 1080
KI270728.1 84080 4.49% 6888
KI270731.1 7900 5.24% 686
KI270734.1 12970 7.86% 1113
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 196334137 8 130 11.39 10
global segment-length histogram

Files

Filename Size md5
STRv_D1_NUDAP_MSN.bw 1.05 GB ae55764df5e2a0aab76b7183e22c7271
genomic_resource.yaml 1.12 KB 5b5922e494d4644eaa8b095e0f47747f
statistics/