Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/STRv_D2_MSN/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for STRv_D2_MSN cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: STRv_D2_MSN
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_STRv_D2_MSN float

johansen2025Crossspecies_atac_human_STRv_D2_MSN
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_STRv_D2_MSN [0.00527, 431]
n
2,591,438,958
mean
0.0775
sd
0.221

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 259143895878.73% 241024321
chr1 205266400 82.45% 19174465
chr2 217366050 89.75% 20231890
chr3 180783350 91.17% 16838391
chr4 171205530 90.01% 15854874
chr5 161494880 88.96% 15008321
chr6 155000010 90.75% 14406560
chr7 141371610 88.72% 13170145
chr8 130220370 89.72% 12105972
chr9 103456160 74.75% 9640627
chr10 120050160 89.73% 11179331
chr11 120551730 89.24% 11238207
chr12 121249630 90.98% 11321127
chr13 88015640 76.96% 8164708
chr14 81061190 75.73% 7563209
chr15 72804070 71.38% 6809158
chr16 70514150 78.06% 6618979
chr17 72796790 87.44% 6860431
chr18 68851520 85.66% 6399254
chr19 51986470 88.69% 4909390
chr20 57181380 88.73% 5351986
chr21 31645750 67.75% 2951209
chr22 32633690 64.22% 3090551
chrX 125879300 80.67% 11298583
chrY 9209880 16.09% 762274
GL000009.2 71910 35.65% 6028
GL000194.1 96480 50.39% 8620
GL000195.1 70860 38.74% 6373
GL000205.2 112900 60.83% 10556
GL000213.1 9130 5.56% 764
GL000218.1 90850 56.38% 8009
GL000219.1 127688 71.26% 11848
KI270711.1 12520 29.66% 1104
KI270713.1 23260 57.09% 2098
KI270721.1 7430 7.41% 607
KI270726.1 8250 18.86% 692
KI270727.1 19680 4.39% 1703
KI270728.1 160010 8.54% 13517
KI270731.1 13280 8.81% 1133
KI270734.1 19000 11.51% 1627
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 241024321 8 120 10.75 10
global segment-length histogram

Files

Filename Size md5
STRv_D2_MSN.bw 1.3 GB f5a1820e82c126a0f299de4162c821c9
genomic_resource.yaml 1.1 KB d85bab48bdfa5b50d15ee343107df583
statistics/