Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/T_cells/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for T_cells cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: T_cells
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_T_cells float

johansen2025Crossspecies_atac_human_T_cells
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_T_cells [0.13, 329]
n
324,156,390
mean
0.247
sd
0.608

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 3241563909.85% 28632680
chr1 27486320 11.04% 2414666
chr2 26340880 10.88% 2334601
chr3 21980580 11.08% 1949428
chr4 18812530 9.89% 1684750
chr5 19186560 10.57% 1704904
chr6 19585860 11.47% 1733795
chr7 17462340 10.96% 1545380
chr8 15528580 10.70% 1378870
chr9 13142690 9.50% 1159781
chr10 15431700 11.53% 1360897
chr11 15800800 11.70% 1389803
chr12 15982420 11.99% 1408859
chr13 10273810 8.98% 915009
chr14 10733810 10.03% 944963
chr15 8654030 8.49% 764060
chr16 9943250 11.01% 865616
chr17 12039410 14.46% 1040037
chr18 7983790 9.93% 711000
chr19 9958990 16.99% 854930
chr20 7454660 11.57% 654598
chr21 4235630 9.07% 372499
chr22 5336170 10.50% 458941
chrX 10376060 6.65% 945764
chrY 349450 0.61% 32780
GL000009.2 3610 1.79% 343
GL000194.1 9000 4.70% 791
GL000195.1 7530 4.12% 674
GL000205.2 20430 11.01% 1728
GL000213.1 230 0.14% 23
GL000218.1 4860 3.02% 447
GL000219.1 15460 8.63% 1386
KI270711.1 630 1.49% 58
KI270713.1 4800 11.78% 400
KI270721.1 490 0.49% 45
KI270726.1 710 1.62% 64
KI270727.1 1460 0.33% 134
KI270728.1 6000 0.32% 570
KI270731.1 240 0.16% 24
KI270734.1 620 0.38% 62
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 28632680 10 110 11.32 10
global segment-length histogram

Files

Filename Size md5
T_cells.bw 189.47 MB 222338c465333885262ae85c8e4b5e33
genomic_resource.yaml 1.08 KB 15e55dc5b2f2c756d8adc04bf7b6c3a0
statistics/