Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/VIP_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for VIP_GABA cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: VIP_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_VIP_GABA float

johansen2025Crossspecies_atac_human_VIP_GABA
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_VIP_GABA [0.0294, 241]
n
1,642,744,190
mean
0.105
sd
0.249

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 164274419049.91% 136847419
chr1 135149220 54.29% 11314620
chr2 137337560 56.71% 11400034
chr3 114809580 57.90% 9545783
chr4 101303740 53.26% 8331858
chr5 100331120 55.27% 8316457
chr6 96244930 56.35% 7969828
chr7 90336450 56.69% 7521833
chr8 82173120 56.62% 6815208
chr9 67242240 48.59% 5617959
chr10 77791020 58.14% 6489607
chr11 78674610 58.24% 6593461
chr12 78899930 59.20% 6587497
chr13 53238330 46.55% 4384853
chr14 52164680 48.73% 4352186
chr15 48496510 47.55% 4054505
chr16 48799840 54.02% 4115521
chr17 51810260 62.23% 4403792
chr18 43703600 54.38% 3620760
chr19 36413100 62.12% 3113996
chr20 39642180 61.51% 3339230
chr21 20081030 42.99% 1666372
chr22 24542220 48.29% 2107354
chrX 60680550 38.89% 4940593
chrY 2541580 4.44% 215927
GL000009.2 17890 8.87% 1548
GL000194.1 41440 21.64% 3449
GL000195.1 35900 19.63% 3029
GL000205.2 67900 36.59% 5616
GL000213.1 1780 1.08% 162
GL000218.1 30280 18.79% 2487
GL000219.1 62220 34.72% 5108
KI270711.1 5600 13.27% 472
KI270713.1 12930 31.73% 1076
KI270721.1 2600 2.59% 224
KI270726.1 880 2.01% 83
KI270727.1 7040 1.57% 618
KI270728.1 35830 1.91% 3102
KI270731.1 5320 3.53% 448
KI270734.1 9180 5.56% 763
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 136847419 10 150 12 10
global segment-length histogram

Files

Filename Size md5
VIP_GABA.bw 803.72 MB 3b92eef8a6b3446be18dfdac5258eb83
genomic_resource.yaml 1.09 KB f124461af7017e23d036ae82a9e30071
statistics/