Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/VLMC/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for VLMC cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: VLMC
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_VLMC float

johansen2025Crossspecies_atac_human_VLMC
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_VLMC [0.0398, 145]
n
874,620,560
mean
0.118
sd
0.368

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 87462056026.57% 72765644
chr1 73070600 29.35% 6076102
chr2 71462700 29.51% 5941271
chr3 59810610 30.16% 4973502
chr4 50229680 26.41% 4185331
chr5 51130810 28.17% 4259773
chr6 52293470 30.62% 4353505
chr7 46247800 29.02% 3841473
chr8 41787590 28.79% 3475578
chr9 36930010 26.68% 3070711
chr10 42352990 31.65% 3518538
chr11 43449370 32.16% 3613952
chr12 42087710 31.58% 3497994
chr13 26621390 23.28% 2216888
chr14 27462430 25.66% 2282924
chr15 27815340 27.27% 2307977
chr16 27008520 29.90% 2239700
chr17 31871600 38.28% 2643290
chr18 21751750 27.06% 1806674
chr19 22858710 39.00% 1899574
chr20 21624690 33.56% 1789280
chr21 11528800 24.68% 955934
chr22 15207650 29.93% 1256537
chrX 28729640 18.41% 2444169
chrY 1065130 1.86% 96333
GL000009.2 11350 5.63% 1025
GL000194.1 27730 14.48% 2279
GL000195.1 20470 11.19% 1747
GL000205.2 53000 28.56% 4287
GL000213.1 850 0.52% 83
GL000218.1 18360 11.39% 1541
GL000219.1 41140 22.96% 3408
KI270711.1 2600 6.16% 215
KI270713.1 10930 26.83% 925
KI270721.1 1930 1.92% 161
KI270726.1 740 1.69% 70
KI270727.1 2880 0.64% 254
KI270728.1 24560 1.31% 2200
KI270731.1 1360 0.90% 125
KI270734.1 3670 2.22% 314
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 72765644 10 140 12.02 10
global segment-length histogram

Files

Filename Size md5
VLMC.bw 520.02 MB 2266b7f8def059b36f832d3f9878a5c7
genomic_resource.yaml 1.07 KB 07d28ec6e21b85fc0bf9d16c5ff58e17
statistics/