Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/VTR-HTH_Glut/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for VTR-HTH_Glut cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: VTR-HTH_Glut
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_VTR-HTH_Glut float

johansen2025Crossspecies_atac_human_VTR-HTH_Glut
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_VTR-HTH_Glut [0.241, 388]
n
640,913,010
mean
0.378
sd
0.393

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 64091301019.47% 53215187
chr1 54840530 22.03% 4529630
chr2 53172180 21.95% 4418496
chr3 43690140 22.03% 3633923
chr4 36054160 18.95% 3033745
chr5 37508690 20.66% 3130671
chr6 35988930 21.07% 3004984
chr7 34807240 21.84% 2890779
chr8 31435700 21.66% 2615163
chr9 26707570 19.30% 2208825
chr10 31542600 23.57% 2607464
chr11 32421260 24.00% 2676885
chr12 31192760 23.40% 2584598
chr13 18764030 16.41% 1576409
chr14 20514730 19.16% 1700878
chr15 19672630 19.29% 1623155
chr16 21071320 23.32% 1726368
chr17 23206590 27.87% 1896231
chr18 16322820 20.31% 1359853
chr19 16476140 28.11% 1351864
chr20 16963670 26.32% 1389683
chr21 7569250 16.20% 628802
chr22 11002330 21.65% 893725
chrX 19403130 12.43% 1679277
chrY 445890 0.78% 41983
GL000009.2 3210 1.59% 305
GL000194.1 18770 9.80% 1596
GL000195.1 11150 6.10% 958
GL000205.2 32770 17.66% 2624
GL000213.1 490 0.30% 49
GL000218.1 12990 8.06% 1136
GL000219.1 28600 15.96% 2383
KI270711.1 1770 4.19% 162
KI270713.1 6020 14.77% 513
KI270721.1 1030 1.03% 89
KI270726.1 220 0.50% 22
KI270727.1 2300 0.51% 205
KI270728.1 16450 0.88% 1504
KI270731.1 810 0.54% 73
KI270734.1 2140 1.30% 177
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 53215187 10 150 12.04 10
global segment-length histogram

Files

Filename Size md5
VTR-HTH_Glut.bw 292.49 MB c0b8c29a8dadc2dd26e5deef1c2e737f
genomic_resource.yaml 1.1 KB 500fcfd484b805aab0ea0eb6022fe85c
statistics/