Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/ZI-HTH_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for ZI-HTH_GABA cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: ZI-HTH_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_ZI-HTH_GABA float

johansen2025Crossspecies_atac_human_ZI-HTH_GABA
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_ZI-HTH_GABA [0.192, 408]
n
726,554,690
mean
0.318
sd
0.368

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 72655469022.07% 59902276
chr1 62115690 24.95% 5097976
chr2 60441160 24.96% 4984039
chr3 49552260 24.99% 4090224
chr4 40979560 21.54% 3418013
chr5 42549670 23.44% 3524664
chr6 40616120 23.78% 3366237
chr7 39649770 24.88% 3268686
chr8 35773010 24.65% 2952765
chr9 30140650 21.78% 2478518
chr10 35669540 26.66% 2926415
chr11 36383640 26.93% 2986511
chr12 35072550 26.32% 2888631
chr13 21849480 19.11% 1816830
chr14 23425720 21.88% 1928684
chr15 22599720 22.16% 1850666
chr16 23868480 26.42% 1942690
chr17 25907430 31.12% 2108465
chr18 18460750 22.97% 1525014
chr19 18391810 31.38% 1503187
chr20 19259610 29.89% 1567462
chr21 8678010 18.58% 715691
chr22 12389930 24.38% 1001049
chrX 21839350 14.00% 1874475
chrY 795810 1.39% 73094
GL000009.2 4420 2.19% 422
GL000194.1 19650 10.26% 1623
GL000195.1 13670 7.47% 1165
GL000205.2 36850 19.86% 2994
GL000213.1 400 0.24% 40
GL000218.1 10670 6.62% 923
GL000219.1 29350 16.38% 2470
KI270711.1 2170 5.14% 189
KI270713.1 7300 17.92% 606
KI270721.1 970 0.97% 84
KI270726.1 370 0.85% 35
KI270727.1 2450 0.55% 225
KI270728.1 13150 0.70% 1194
KI270731.1 1110 0.74% 104
KI270734.1 2440 1.48% 216
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 59902276 10 150 12.13 10
global segment-length histogram

Files

Filename Size md5
ZI-HTH_GABA.bw 319.94 MB b92e5d97a6aa35cadfa993fdc40ed262
genomic_resource.yaml 1.1 KB 4fceb0d889d97b8560f50d50217f321c
statistics/