Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/AMY-SLEA-BNST_D1_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for AMY-SLEA-BNST_D1_GABA cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: AMY-SLEA-BNST_D1_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_AMY-SLEA-BNST_D1_GABA float

johansen2025Crossspecies_atac_macaque_AMY-SLEA-BNST_D1_GABA

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_AMY-SLEA-BNST_D1_GABA [0.477, 85.9]
n
324,862,645
mean
0.652
sd
0.607

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 32486264510.93% 28269440
NC_005943.1 1150 6.94% 107
NC_027914.1 216930 1.85% 20596
NC_041754.1 28804210 12.88% 2488901
NC_041755.1 21349910 10.88% 1870527
NC_041756.1 21175910 11.43% 1846328
NC_041757.1 17412770 10.25% 1534655
NC_041758.1 17045260 9.10% 1514530
NC_041759.1 17738900 9.91% 1563178
NC_041760.1 21241240 12.50% 1839885
NC_041761.1 14925900 10.25% 1312078
NC_041762.1 16067270 11.98% 1396515
NC_041763.1 15467620 15.54% 1312588
NC_041764.1 15746590 11.83% 1369401
NC_041765.1 13647616 10.49% 1201044
NC_041766.1 12617230 11.60% 1099886
NC_041767.1 16689440 13.03% 1436327
NC_041768.1 13366350 11.80% 1158276
NC_041769.1 13462770 16.91% 1136685
NC_041770.1 9360070 9.81% 826471
NC_041771.1 7498030 10.07% 662382
NC_041772.1 10199450 17.49% 853002
NC_041773.1 11800565 15.30% 1005537
NC_041774.1 8356650 5.45% 761207
NW_021160097.1 220 0.59% 19
NW_021160098.1 560 1.40% 53
NW_021160099.1 120 0.30% 12
NW_021160102.1 630 1.26% 60
NW_021160105.1 340 0.62% 33
NW_021160106.1 1520 2.74% 133
NW_021160107.1 260 0.47% 26
NW_021160109.1 1350 1.64% 123
NW_021160110.1 4750 4.02% 419
NW_021160111.1 1950 1.47% 186
NW_021160113.1 19440 16.71% 1575
NW_021160114.1 2560 3.88% 224
NW_021160116.1 310 0.88% 29
NW_021160121.1 740 0.86% 68
NW_021160122.1 1370 1.49% 128
NW_021160123.1 1270 2.40% 115
NW_021160125.1 60 0.24% 6
NW_021160136.1 810 1.36% 74
NW_021160140.1 1190 0.91% 107
NW_021160141.1 1530 1.14% 147
NW_021160142.1 4680 9.79% 404
NW_021160144.1 16670 1.36% 1621
NW_021160145.1 410 1.53% 37
NW_021160147.1 240 0.80% 24
NW_021160148.1 1260 3.67% 109
NW_021160150.1 1260 3.36% 116
NW_021160155.1 740 1.36% 68
NW_021160158.1 650 0.86% 63
NW_021160159.1 880 1.03% 87
NW_021160161.1 20420 2.77% 1840
NW_021160167.1 20 0.05% 2
NW_021160168.1 180 0.43% 16
NW_021160175.1 18770 10.14% 1674
NW_021160179.1 290 0.75% 27
NW_021160182.1 2430 4.18% 212
NW_021160184.1 270 0.44% 25
NW_021160185.1 690 1.11% 62
NW_021160186.1 1700 2.64% 151
NW_021160187.1 300 0.39% 30
NW_021160188.1 1510 1.82% 143
NW_021160189.1 1050 1.04% 102
NW_021160190.1 1410 3.95% 129
NW_021160191.1 450 1.62% 41
NW_021160193.1 40 0.13% 4
NW_021160196.1 3100 6.72% 262
NW_021160197.1 970 1.87% 91
NW_021160199.1 590 1.06% 58
NW_021160200.1 450 0.76% 44
NW_021160201.1 1870 3.04% 168
NW_021160202.1 980 1.50% 88
NW_021160203.1 1810 2.51% 171
NW_021160204.1 1780 2.44% 167
NW_021160205.1 240 0.33% 24
NW_021160206.1 950 1.13% 91
NW_021160207.1 1090 1.10% 107
NW_021160209.1 4070 0.61% 375
NW_021160211.1 1590 1.19% 136
NW_021160220.1 3500 5.25% 305
NW_021160221.1 900 1.27% 87
NW_021160222.1 370 0.48% 35
NW_021160223.1 4990 5.99% 433
NW_021160225.1 1790 3.33% 156
NW_021160226.1 930 2.58% 84
NW_021160228.1 580 1.21% 54
NW_021160229.1 660 1.38% 62
NW_021160231.1 490 0.90% 48
NW_021160233.1 1140 1.76% 96
NW_021160234.1 6670 10.18% 546
NW_021160236.1 1210 1.56% 113
NW_021160237.1 4270 4.98% 377
NW_021160238.1 3700 3.54% 322
NW_021160239.1 330 1.13% 31
NW_021160242.1 430 1.46% 40
NW_021160243.1 170 0.54% 14
NW_021160244.1 8850 25.13% 724
NW_021160245.1 350 0.80% 34
NW_021160248.1 280 0.37% 28
NW_021160249.1 1250 1.65% 115
NW_021160250.1 250 0.39% 24
NW_021160251.1 1110 1.31% 105
NW_021160252.1 3040 3.43% 272
NW_021160255.1 560 1.99% 46
NW_021160263.1 280 0.53% 27
NW_021160266.1 280 0.37% 28
NW_021160268.1 590 0.87% 56
NW_021160270.1 950 2.73% 81
NW_021160271.1 330 0.95% 30
NW_021160272.1 1500 4.29% 124
NW_021160273.1 120 0.30% 12
NW_021160277.1 160 0.36% 15
NW_021160278.1 570 1.02% 56
NW_021160279.1 1260 1.91% 120
NW_021160282.1 3250 2.63% 292
NW_021160284.1 430 1.24% 39
NW_021160285.1 380 0.85% 34
NW_021160291.1 150 0.33% 15
NW_021160293.1 2050 3.88% 181
NW_021160294.1 2150 2.70% 199
NW_021160295.1 920 1.11% 90
NW_021160297.1 1230 2.19% 114
NW_021160298.1 310 1.14% 30
NW_021160300.1 2270 3.65% 208
NW_021160305.1 120 0.30% 12
NW_021160306.1 640 1.62% 59
NW_021160307.1 1300 2.47% 124
NW_021160308.1 850 1.58% 82
NW_021160310.1 9460 16.24% 751
NW_021160311.1 2910 3.70% 267
NW_021160312.1 3120 3.53% 271
NW_021160313.1 1740 1.84% 154
NW_021160319.1 840 1.93% 79
NW_021160320.1 1230 2.34% 112
NW_021160324.1 2440 3.84% 213
NW_021160325.1 1290 1.98% 124
NW_021160326.1 740 1.14% 69
NW_021160327.1 1550 2.35% 140
NW_021160328.1 4930 7.79% 396
NW_021160329.1 1480 2.76% 131
NW_021160338.1 330 0.88% 33
NW_021160339.1 100 0.26% 8
NW_021160341.1 550 1.19% 52
NW_021160347.1 2450 1.48% 228
NW_021160353.1 1130 2.74% 100
NW_021160354.1 280 0.67% 25
NW_021160355.1 1020 1.84% 99
NW_021160356.1 570 0.75% 54
NW_021160357.1 140 0.46% 14
NW_021160358.1 850 2.15% 81
NW_021160359.1 1330 3.24% 116
NW_021160361.1 230 0.49% 22
NW_021160362.1 320 0.60% 31
NW_021160363.1 1000 1.64% 94
NW_021160364.1 1370 2.22% 123
NW_021160365.1 1230 1.85% 114
NW_021160366.1 2160 3.03% 195
NW_021160367.1 4280 5.60% 381
NW_021160368.1 260 0.33% 25
NW_021160369.1 350 0.43% 32
NW_021160370.1 2450 2.74% 216
NW_021160371.1 610 0.67% 58
NW_021160372.1 3930 2.92% 359
NW_021160373.1 3130 5.38% 274
NW_021160374.1 1380 1.11% 132
NW_021160375.1 4780 2.60% 438
NW_021160376.1 14930 1.73% 1409
NW_021160381.1 150 0.31% 12
NW_021160383.1 5130 7.44% 448
NW_021160384.1 450 0.57% 41
NW_021160401.1 120 0.74% 12
NW_021160410.1 3840 23.34% 303
NW_021160417.1 400 0.71% 39
NW_021160452.1 350 2.07% 34
NW_021160482.1 80 0.46% 8
NW_021160484.1 300 1.72% 29
NW_021160495.1 16280 1.98% 1476
NW_021160514.1 160 0.89% 15
NW_021160523.1 190 1.05% 17
NW_021160525.1 160 0.88% 15
NW_021160535.1 410 2.24% 37
NW_021160549.1 730 3.93% 55
NW_021160573.1 1330 6.99% 112
NW_021160589.1 20 0.10% 2
NW_021160606.1 13540 1.35% 1227
NW_021160623.1 230 1.16% 23
NW_021160625.1 20 0.10% 2
NW_021160629.1 130 0.65% 9
NW_021160635.1 40 0.20% 3
NW_021160655.1 490 2.38% 45
NW_021160656.1 300 1.47% 29
NW_021160678.1 40 0.19% 4
NW_021160682.1 3130 15.10% 265
NW_021160688.1 1130 5.53% 92
NW_021160701.1 2090 9.85% 166
NW_021160725.1 160 0.74% 16
NW_021160726.1 8420 38.72% 733
NW_021160734.1 50 0.23% 4
NW_021160770.1 7450 32.92% 628
NW_021160772.1 320 1.41% 28
NW_021160805.1 1040 4.44% 80
NW_021160821.1 20 0.08% 2
NW_021160827.1 13490 1.84% 1114
NW_021160832.1 20 0.08% 2
NW_021160834.1 240 1.00% 24
NW_021160835.1 20 0.12% 2
NW_021160890.1 240 0.95% 22
NW_021160903.1 1090 4.12% 101
NW_021160919.1 460 1.76% 40
NW_021160925.1 80 0.31% 7
NW_021160946.1 720 2.72% 64
NW_021160955.1 370 1.39% 36
NW_021160976.1 1610 5.92% 143
NW_021160983.1 20 0.07% 2
NW_021161033.1 20 0.07% 2
NW_021161038.1 540 2.00% 47
NW_021161041.1 190 0.67% 19
NW_021161043.1 60 0.21% 6
NW_021161046.1 1310 4.44% 106
NW_021161062.1 120 0.41% 12
NW_021161066.1 1310 4.39% 118
NW_021161106.1 590 1.92% 58
NW_021161107.1 200 0.65% 20
NW_021161113.1 940 2.79% 85
NW_021161114.1 1950 6.32% 166
NW_021161131.1 40 0.13% 4
NW_021161133.1 480 0.32% 45
NW_021161138.1 20 0.06% 2
NW_021161152.1 470 1.49% 40
NW_021161164.1 880 2.72% 77
NW_021161166.1 580 1.78% 55
NW_021161184.1 190 0.64% 19
NW_021161201.1 340 1.02% 30
NW_021161211.1 610 1.83% 57
NW_021161213.1 80 0.24% 8
NW_021161224.1 1370 4.06% 122
NW_021161226.1 1030 3.09% 88
NW_021161241.1 60 0.17% 6
NW_021161253.1 100 0.29% 8
NW_021161261.1 100 0.29% 10
NW_021161269.1 1290 3.68% 117
NW_021161282.1 4350 11.19% 356
NW_021161303.1 60 0.17% 6
NW_021161305.1 20 0.06% 2
NW_021161307.1 230 0.87% 22
NW_021161312.1 20 0.06% 2
NW_021161320.1 950 0.97% 94
NW_021161336.1 700 1.90% 64
NW_021161338.1 200 0.54% 20
NW_021161340.1 250 0.68% 22
NW_021161348.1 370 0.99% 34
NW_021161355.1 850 2.20% 77
NW_021161360.1 170 0.45% 16
NW_021161364.1 560 1.47% 49
NW_021161377.1 3080 7.75% 256
NW_021161379.1 20 0.05% 2
NW_021161380.1 40 0.13% 4
NW_021161385.1 40 0.10% 4
NW_021161392.1 2750 7.03% 240
NW_021161394.1 500 1.29% 42
NW_021161396.1 40 0.10% 4
NW_021161399.1 480 2.19% 46
NW_021161404.1 190 0.48% 19
NW_021161413.1 210 0.53% 20
NW_021161421.1 40 0.10% 4
NW_021161422.1 40 0.10% 4
NW_021161427.1 390 0.97% 39
NW_021161433.1 60 0.15% 6
NW_021161437.1 60 0.20% 6
NW_021161446.1 80 0.20% 8
NW_021161463.1 20 0.05% 2
NW_021161468.1 230 0.55% 21
NW_021161470.1 40 0.10% 4
NW_021161486.1 1000 2.35% 86
NW_021161494.1 20 0.05% 2
NW_021161497.1 80 0.19% 6
NW_021161505.1 1110 2.58% 98
NW_021161507.1 590 1.36% 58
NW_021161508.1 2464 5.71% 223
NW_021161519.1 800 1.82% 76
NW_021161520.1 1760 4.08% 152
NW_021161523.1 550 1.27% 53
NW_021161525.1 2820 6.41% 250
NW_021161526.1 1530 3.47% 124
NW_021161532.1 180 0.40% 16
NW_021161535.1 170 0.38% 17
NW_021161537.1 4030 9.09% 343
NW_021161545.1 5390 12.06% 434
NW_021161552.1 60 0.14% 6
NW_021161554.1 350 0.78% 34
NW_021161561.1 1430 3.16% 124
NW_021161562.1 1600 3.52% 140
NW_021161567.1 290 0.64% 25
NW_021161570.1 70 0.15% 4
NW_021161582.1 2060 4.48% 180
NW_021161585.1 2470 5.36% 212
NW_021161590.1 3710 8.06% 317
NW_021161593.1 3610 7.76% 306
NW_021161596.1 9540 1.77% 839
NW_021161601.1 1000 2.13% 88
NW_021161608.1 340 0.73% 30
NW_021161609.1 40 0.09% 4
NW_021161614.1 180 0.38% 16
NW_021161616.1 1900 3.97% 171
NW_021161627.1 620 1.85% 57
NW_021161633.1 4050 8.20% 363
NW_021161642.1 460 0.92% 42
NW_021161648.1 6780 13.32% 583
NW_021161679.1 740 1.42% 68
NW_021161680.1 350 0.68% 35
NW_021161686.1 4240 3.13% 373
NW_021161694.1 310 0.68% 31
NW_021161695.1 410 0.77% 37
NW_021161696.1 290 0.55% 28
NW_021161699.1 1850 3.83% 164
NW_021161700.1 20 0.04% 2
NW_021161713.1 70 0.13% 7
NW_021161715.1 60 0.11% 6
NW_021161718.1 3420 6.28% 288
NW_021161725.1 490 1.56% 45
NW_021161737.1 690 1.24% 64
NW_021161743.1 290 0.52% 25
NW_021161747.1 40 0.07% 4
NW_021161754.1 4740 8.29% 405
NW_021161759.1 60 0.10% 4
NW_021161767.1 870 0.85% 83
NW_021161769.1 490 0.85% 45
NW_021161772.1 550 0.74% 50
NW_021161784.1 180 3.50% 17
NW_021161790.1 3370 5.58% 306
NW_021161794.1 150 0.25% 15
NW_021161796.1 300 0.50% 29
NW_021161798.1 930 1.98% 83
NW_021161830.1 650 1.45% 64
NW_021161832.1 290 0.46% 29
NW_021161839.1 310 0.48% 27
NW_021161842.1 470 0.72% 47
NW_021161843.1 400 0.61% 40
NW_021161845.1 3830 5.86% 335
NW_021161850.1 77760 6.96% 6833
NW_021161853.1 2180 3.30% 183
NW_021161857.1 460 0.69% 45
NW_021161862.1 510 0.77% 49
NW_021161876.1 1750 2.56% 172
NW_021161878.1 1540 2.26% 138
NW_021161881.1 1840 3.05% 165
NW_021161888.1 1750 2.52% 163
NW_021161902.1 2900 4.47% 254
NW_021161927.1 640 0.86% 61
NW_021161934.1 1040 1.38% 97
NW_021161939.1 4160 5.49% 362
NW_021161954.1 1660 2.15% 142
NW_021161955.1 900 1.16% 82
NW_021161956.1 3560 4.66% 313
NW_021161958.1 2430 3.09% 220
NW_021161961.1 1530 1.96% 149
NW_021161962.1 190 0.24% 18
NW_021161965.1 590 0.75% 56
NW_021161996.1 850 0.99% 78
NW_021162004.1 210 0.74% 21
NW_021162007.1 880 1.00% 84
NW_021162009.1 9910 11.37% 812
NW_021162025.1 1410 1.58% 122
NW_021162035.1 510 0.55% 51
NW_021162047.1 670 0.70% 63
NW_021162055.1 2560 2.57% 220
NW_021162083.1 1590 0.92% 156
NW_021162091.1 4550 4.01% 388
NW_021162100.1 5110 4.07% 410
NW_021162108.1 3240 10.17% 282
NW_021162157.1 370 0.61% 33
NW_021162208.1 280 0.11% 27
NW_021162222.1 390 1.03% 36
NW_021162226.1 280 0.64% 28
NW_021162246.1 6400 6.06% 580
NW_021162251.1 4920 6.89% 446
NW_021162263.1 130 0.49% 11
NW_021162265.1 3030 7.84% 269
NW_021162274.1 9320 9.18% 808
NW_021162277.1 390 1.57% 38
NW_021162463.1 240 3.18% 21
NW_021162495.1 80 1.21% 8
NW_021162553.1 150 1.73% 14
NW_021162593.1 80 0.86% 8
NW_021162599.1 1320 14.08% 104
NW_021162621.1 80 0.82% 8
NW_021162643.1 1690 6.65% 147
NW_021162814.1 60 0.48% 6
NW_021162871.1 250 1.80% 23
2549 contigs with no values (90531422 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 28269440 4 140 11.49 10
global segment-length histogram

Files

Filename Size md5
AMY-SLEA-BNST_D1_GABA.bw 184.47 MB e4a94ab4873acf0c669ef77418901dd8
genomic_resource.yaml 1.14 KB 77f8f741433059721894031d3746153f
statistics/