Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/AMY-SLEA-BNST_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for AMY-SLEA-BNST_GABA cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: AMY-SLEA-BNST_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_AMY-SLEA-BNST_GABA float

johansen2025Crossspecies_atac_macaque_AMY-SLEA-BNST_GABA

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_AMY-SLEA-BNST_GABA [0.0633, 63]
n
1,345,031,030
mean
0.167
sd
0.305

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 134503103045.27% 110623167
NC_005943.1 1890 11.41% 177
NC_027914.1 1595280 13.57% 135917
NC_041754.1 114465690 51.19% 9439547
NC_041755.1 92154070 46.97% 7545981
NC_041756.1 89128747 48.10% 7319400
NC_041757.1 77238820 45.44% 6316382
NC_041758.1 77384150 41.31% 6322629
NC_041759.1 79949330 44.64% 6543397
NC_041760.1 86004320 50.63% 7074769
NC_041761.1 66064740 45.35% 5405526
NC_041762.1 66356530 49.47% 5444358
NC_041763.1 55826610 56.10% 4636964
NC_041764.1 64495240 48.47% 5303803
NC_041765.1 60320906 46.39% 4929316
NC_041766.1 52925220 48.67% 4344097
NC_041767.1 64582580 50.43% 5338584
NC_041768.1 54242520 47.88% 4470273
NC_041769.1 46013570 57.79% 3842957
NC_041770.1 41176120 43.15% 3365958
NC_041771.1 33809630 45.40% 2760439
NC_041772.1 31814530 54.56% 2682939
NC_041773.1 42952335 55.68% 3564272
NC_041774.1 43339230 28.25% 3565853
NW_021160097.1 630 1.70% 55
NW_021160098.1 2300 5.75% 195
NW_021160099.1 1170 2.89% 108
NW_021160102.1 3750 7.47% 329
NW_021160105.1 2230 4.06% 188
NW_021160106.1 6990 12.59% 588
NW_021160107.1 2020 3.63% 182
NW_021160109.1 8120 9.87% 705
NW_021160110.1 19950 16.89% 1666
NW_021160111.1 18130 13.63% 1573
NW_021160113.1 52710 45.31% 4532
NW_021160114.1 11000 16.69% 924
NW_021160116.1 1170 3.31% 110
NW_021160121.1 2910 3.38% 265
NW_021160122.1 7150 7.77% 624
NW_021160123.1 5080 9.60% 444
NW_021160125.1 270 1.07% 27
NW_021160136.1 4800 8.03% 404
NW_021160140.1 8820 6.77% 743
NW_021160141.1 9240 6.89% 798
NW_021160142.1 19810 41.43% 1607
NW_021160144.1 138720 11.28% 12313
NW_021160145.1 1820 6.77% 155
NW_021160147.1 2590 8.62% 214
NW_021160148.1 5470 15.94% 456
NW_021160150.1 2960 7.89% 263
NW_021160155.1 3850 7.06% 339
NW_021160158.1 3840 5.10% 324
NW_021160159.1 9260 10.79% 793
NW_021160161.1 101892 13.80% 8523
NW_021160167.1 660 1.74% 61
NW_021160168.1 800 1.92% 72
NW_021160175.1 77290 41.75% 6234
NW_021160179.1 1810 4.66% 157
NW_021160182.1 8420 14.50% 717
NW_021160184.1 2300 3.75% 207
NW_021160185.1 2680 4.31% 239
NW_021160186.1 10780 16.72% 896
NW_021160187.1 2240 2.93% 200
NW_021160188.1 7710 9.29% 633
NW_021160189.1 7630 7.53% 647
NW_021160190.1 6650 18.61% 531
NW_021160191.1 2410 8.65% 190
NW_021160193.1 370 1.19% 34
NW_021160196.1 14190 30.78% 1169
NW_021160197.1 4650 8.97% 406
NW_021160199.1 3760 6.72% 312
NW_021160200.1 4120 6.98% 361
NW_021160201.1 10170 16.55% 829
NW_021160202.1 4120 6.29% 342
NW_021160203.1 8570 11.87% 712
NW_021160204.1 7710 10.59% 661
NW_021160205.1 3660 5.00% 315
NW_021160206.1 5870 7.01% 480
NW_021160207.1 8570 8.67% 721
NW_021160209.1 25650 3.83% 2138
NW_021160211.1 8950 6.71% 774
NW_021160220.1 13240 19.84% 1094
NW_021160221.1 6040 8.52% 543
NW_021160222.1 1860 2.44% 170
NW_021160223.1 16770 20.13% 1388
NW_021160225.1 7960 14.79% 665
NW_021160226.1 4280 11.88% 365
NW_021160228.1 2290 4.79% 196
NW_021160229.1 5680 11.84% 476
NW_021160231.1 4200 7.71% 348
NW_021160233.1 5350 8.28% 433
NW_021160234.1 18820 28.71% 1641
NW_021160236.1 7250 9.32% 628
NW_021160237.1 21370 24.93% 1764
NW_021160238.1 15590 14.93% 1311
NW_021160239.1 2270 7.78% 184
NW_021160242.1 1780 6.02% 152
NW_021160243.1 1010 3.20% 93
NW_021160244.1 20840 59.17% 1882
NW_021160245.1 1870 4.27% 167
NW_021160248.1 2510 3.36% 219
NW_021160249.1 7440 9.83% 621
NW_021160250.1 2680 4.17% 231
NW_021160251.1 9200 10.90% 769
NW_021160252.1 14100 15.91% 1165
NW_021160255.1 3000 10.69% 251
NW_021160263.1 2140 4.07% 195
NW_021160266.1 2540 3.39% 232
NW_021160268.1 3560 5.26% 321
NW_021160270.1 3820 10.97% 328
NW_021160271.1 1980 5.70% 165
NW_021160272.1 4450 12.72% 385
NW_021160273.1 1980 4.93% 176
NW_021160277.1 580 1.29% 54
NW_021160278.1 4990 8.97% 420
NW_021160279.1 6240 9.46% 533
NW_021160282.1 16410 13.26% 1355
NW_021160284.1 1610 4.63% 141
NW_021160285.1 2530 5.67% 225
NW_021160291.1 890 1.97% 82
NW_021160293.1 8330 15.77% 706
NW_021160294.1 11210 14.08% 945
NW_021160295.1 6790 8.23% 584
NW_021160297.1 5850 10.40% 499
NW_021160298.1 3050 11.19% 265
NW_021160300.1 9650 15.50% 801
NW_021160305.1 1150 2.85% 103
NW_021160306.1 3470 8.79% 298
NW_021160307.1 6700 12.72% 570
NW_021160308.1 5990 11.11% 499
NW_021160310.1 23350 40.08% 2048
NW_021160311.1 14050 17.84% 1192
NW_021160312.1 13290 15.03% 1149
NW_021160313.1 9550 10.09% 784
NW_021160319.1 5420 12.48% 449
NW_021160320.1 4890 9.31% 410
NW_021160324.1 9730 15.30% 830
NW_021160325.1 6760 10.38% 562
NW_021160326.1 3910 6.00% 323
NW_021160327.1 7940 12.03% 677
NW_021160328.1 14150 22.35% 1215
NW_021160329.1 8070 15.03% 670
NW_021160338.1 1490 3.97% 140
NW_021160339.1 920 2.39% 82
NW_021160341.1 4370 9.44% 377
NW_021160347.1 16260 9.84% 1394
NW_021160353.1 6060 14.72% 497
NW_021160354.1 2500 5.96% 209
NW_021160355.1 4670 8.41% 382
NW_021160356.1 3350 4.39% 294
NW_021160357.1 1110 3.65% 97
NW_021160358.1 5650 14.32% 479
NW_021160359.1 6410 15.61% 522
NW_021160361.1 2060 4.38% 179
NW_021160362.1 2370 4.42% 204
NW_021160363.1 7010 11.51% 573
NW_021160364.1 6530 10.56% 586
NW_021160365.1 7340 11.05% 608
NW_021160366.1 8470 11.89% 706
NW_021160367.1 15460 20.24% 1304
NW_021160368.1 2390 3.03% 215
NW_021160369.1 3040 3.72% 269
NW_021160370.1 10540 11.78% 897
NW_021160371.1 4870 5.39% 420
NW_021160372.1 19640 14.61% 1661
NW_021160373.1 12540 21.56% 1042
NW_021160374.1 10600 8.53% 924
NW_021160375.1 27060 14.72% 2231
NW_021160376.1 112380 13.02% 9417
NW_021160381.1 870 1.79% 76
NW_021160383.1 20570 29.81% 1725
NW_021160384.1 2990 3.76% 259
NW_021160401.1 1000 6.14% 91
NW_021160410.1 7790 47.34% 695
NW_021160417.1 2130 3.76% 173
NW_021160452.1 1630 9.63% 133
NW_021160482.1 400 2.32% 33
NW_021160484.1 2750 15.81% 231
NW_021160495.1 117180 14.22% 9878
NW_021160514.1 1820 10.10% 145
NW_021160523.1 1000 5.53% 86
NW_021160525.1 1770 9.76% 147
NW_021160535.1 2470 13.48% 200
NW_021160549.1 2360 12.71% 198
NW_021160573.1 5580 29.31% 484
NW_021160589.1 100 0.52% 10
NW_021160606.1 78420 7.80% 6615
NW_021160623.1 1290 6.52% 115
NW_021160625.1 140 0.71% 14
NW_021160629.1 450 2.26% 36
NW_021160635.1 360 1.79% 32
NW_021160655.1 2810 13.66% 237
NW_021160656.1 1710 8.36% 140
NW_021160678.1 300 1.44% 28
NW_021160682.1 10965 52.91% 909
NW_021160688.1 4140 20.28% 349
NW_021160701.1 6320 29.79% 545
NW_021160725.1 490 2.26% 45
NW_021160726.1 13698 62.99% 1286
NW_021160734.1 450 2.07% 41
NW_021160757.1 40 0.18% 4
NW_021160770.1 13190 58.28% 1237
NW_021160772.1 1800 7.94% 155
NW_021160805.1 5410 23.07% 461
NW_021160821.1 310 1.30% 28
NW_021160827.1 52640 7.17% 4491
NW_021160832.1 400 1.66% 38
NW_021160834.1 1730 7.17% 157
NW_021160835.1 60 0.35% 6
NW_021160848.1 260 1.07% 21
NW_021160868.1 80 0.33% 8
NW_021160890.1 2180 8.63% 186
NW_021160903.1 5256 19.84% 415
NW_021160919.1 1290 4.95% 103
NW_021160925.1 430 1.65% 37
NW_021160946.1 2310 8.73% 205
NW_021160955.1 2190 8.25% 185
NW_021160961.1 1460 5.46% 131
NW_021160976.1 6280 23.07% 507
NW_021160983.1 140 0.51% 11
NW_021160986.1 40 0.15% 4
NW_021161026.1 150 0.54% 14
NW_021161033.1 40 0.14% 4
NW_021161038.1 1960 7.24% 168
NW_021161041.1 1570 5.51% 135
NW_021161043.1 630 2.16% 51
NW_021161046.1 3940 13.35% 338
NW_021161062.1 800 2.70% 64
NW_021161066.1 6350 21.28% 529
NW_021161106.1 4180 13.64% 362
NW_021161107.1 1370 4.45% 120
NW_021161113.1 4830 14.32% 398
NW_021161114.1 5190 16.82% 454
NW_021161131.1 80 0.26% 8
NW_021161133.1 4030 2.71% 353
NW_021161138.1 340 1.09% 29
NW_021161152.1 2680 8.52% 224
NW_021161164.1 3050 9.44% 264
NW_021161166.1 4500 13.85% 383
NW_021161184.1 1090 3.69% 91
NW_021161201.1 1700 5.12% 142
NW_021161211.1 3450 10.34% 298
NW_021161213.1 410 1.23% 40
NW_021161224.1 5500 16.32% 448
NW_021161226.1 4100 12.30% 348
NW_021161241.1 510 1.49% 47
NW_021161247.1 40 0.12% 4
NW_021161253.1 250 0.72% 23
NW_021161261.1 1770 5.06% 155
NW_021161269.1 7530 21.45% 619
NW_021161274.1 40 0.12% 4
NW_021161282.1 15110 38.87% 1304
NW_021161303.1 510 1.42% 46
NW_021161305.1 450 1.25% 38
NW_021161307.1 910 3.43% 82
NW_021161312.1 270 0.76% 23
NW_021161320.1 7060 7.19% 596
NW_021161336.1 4050 10.99% 341
NW_021161338.1 940 2.53% 84
NW_021161340.1 1730 4.71% 152
NW_021161348.1 3270 8.73% 285
NW_021161355.1 5440 14.08% 470
NW_021161360.1 630 1.68% 55
NW_021161364.1 2250 5.89% 191
NW_021161377.1 12210 30.71% 1035
NW_021161379.1 260 0.68% 25
NW_021161380.1 130 0.41% 13
NW_021161385.1 410 1.06% 36
NW_021161392.1 7670 19.61% 672
NW_021161394.1 3410 8.78% 293
NW_021161396.1 180 0.46% 18
NW_021161399.1 2420 11.04% 204
NW_021161404.1 1160 2.94% 106
NW_021161413.1 2680 6.77% 220
NW_021161421.1 720 1.81% 62
NW_021161422.1 450 1.14% 39
NW_021161427.1 2180 5.44% 191
NW_021161433.1 550 1.36% 48
NW_021161437.1 880 2.93% 80
NW_021161446.1 1310 3.20% 121
NW_021161463.1 60 0.14% 6
NW_021161468.1 1730 4.12% 156
NW_021161470.1 430 1.03% 42
NW_021161483.1 40 0.09% 3
NW_021161486.1 5530 12.99% 455
NW_021161494.1 750 1.75% 64
NW_021161497.1 880 2.05% 79
NW_021161505.1 5340 12.39% 442
NW_021161507.1 5230 12.08% 428
NW_021161508.1 12464 28.88% 1024
NW_021161519.1 5450 12.43% 462
NW_021161520.1 3680 8.54% 341
NW_021161523.1 2870 6.63% 237
NW_021161525.1 9990 22.69% 810
NW_021161526.1 6040 13.71% 519
NW_021161532.1 820 1.84% 76
NW_021161535.1 1350 3.02% 114
NW_021161537.1 12230 27.57% 1069
NW_021161545.1 13420 30.04% 1180
NW_021161552.1 510 1.20% 45
NW_021161554.1 3620 8.02% 297
NW_021161561.1 7430 16.44% 619
NW_021161562.1 7980 17.55% 667
NW_021161567.1 1840 4.04% 157
NW_021161570.1 90 0.20% 9
NW_021161582.1 10110 22.01% 869
NW_021161585.1 10330 22.42% 859
NW_021161590.1 18240 39.64% 1493
NW_021161593.1 15010 32.26% 1228
NW_021161596.1 50940 9.45% 4362
NW_021161601.1 5540 11.78% 469
NW_021161608.1 1520 3.25% 136
NW_021161609.1 390 0.83% 35
NW_021161614.1 1850 3.88% 157
NW_021161616.1 5870 12.27% 512
NW_021161617.1 470 0.98% 46
NW_021161627.1 4310 12.89% 363
NW_021161633.1 19050 38.55% 1561
NW_021161642.1 3300 6.63% 293
NW_021161648.1 20090 39.48% 1741
NW_021161679.1 4600 8.82% 393
NW_021161680.1 2580 4.99% 224
NW_021161686.1 16080 11.89% 1371
NW_021161694.1 1700 3.74% 153
NW_021161695.1 3260 6.10% 289
NW_021161696.1 1970 3.71% 174
NW_021161699.1 10684 22.10% 886
NW_021161700.1 450 0.85% 43
NW_021161713.1 850 1.58% 78
NW_021161715.1 510 0.94% 48
NW_021161718.1 12170 22.34% 1030
NW_021161725.1 4670 14.84% 372
NW_021161737.1 4160 7.45% 352
NW_021161743.1 2100 3.75% 180
NW_021161747.1 320 0.57% 31
NW_021161754.1 16970 29.67% 1426
NW_021161759.1 600 1.04% 53
NW_021161767.1 8490 8.31% 699
NW_021161769.1 3030 5.23% 256
NW_021161772.1 4030 5.45% 356
NW_021161784.1 1100 21.37% 94
NW_021161790.1 15697 26.01% 1278
NW_021161794.1 1510 2.50% 136
NW_021161796.1 2260 3.74% 196
NW_021161798.1 4890 10.39% 407
NW_021161830.1 5710 12.76% 468
NW_021161832.1 2150 3.39% 183
NW_021161839.1 1770 2.76% 163
NW_021161842.1 5010 7.68% 449
NW_021161843.1 3030 4.65% 263
NW_021161845.1 16790 25.67% 1407
NW_021161850.1 338181 30.27% 27996
NW_021161853.1 8950 13.56% 753
NW_021161857.1 7540 11.36% 648
NW_021161862.1 3160 4.78% 283
NW_021161876.1 11370 16.65% 945
NW_021161878.1 9670 14.22% 802
NW_021161881.1 9380 15.57% 796
NW_021161888.1 9630 13.87% 817
NW_021161902.1 12020 18.55% 995
NW_021161927.1 5980 7.99% 505
NW_021161934.1 7240 9.61% 612
NW_021161939.1 15020 19.83% 1273
NW_021161954.1 8360 10.84% 717
NW_021161955.1 5350 6.90% 437
NW_021161956.1 11770 15.41% 993
NW_021161958.1 16160 20.58% 1323
NW_021161961.1 9850 12.60% 817
NW_021161962.1 1450 1.81% 131
NW_021161965.1 5470 6.92% 468
NW_021161996.1 4950 5.76% 419
NW_021162004.1 1210 4.26% 107
NW_021162007.1 6120 6.96% 502
NW_021162009.1 32510 37.29% 2784
NW_021162025.1 7960 8.93% 689
NW_021162035.1 3440 3.69% 305
NW_021162047.1 5060 5.29% 443
NW_021162055.1 13460 13.53% 1152
NW_021162083.1 11040 6.41% 967
NW_021162091.1 17090 15.07% 1449
NW_021162100.1 14440 11.49% 1285
NW_021162108.1 13860 43.49% 1138
NW_021162157.1 2370 3.93% 210
NW_021162208.1 1670 0.67% 162
NW_021162222.1 2780 7.34% 245
NW_021162226.1 1980 4.54% 183
NW_021162246.1 34540 32.70% 2769
NW_021162251.1 27660 38.73% 2234
NW_021162253.1 180 0.57% 14
NW_021162263.1 460 1.74% 37
NW_021162265.1 13040 33.74% 1071
NW_021162274.1 36880 36.32% 3052
NW_021162277.1 2770 11.14% 234
NW_021162460.1 20 0.27% 2
NW_021162463.1 660 8.74% 56
NW_021162495.1 430 6.53% 40
NW_021162553.1 640 7.39% 46
NW_021162593.1 140 1.51% 13
NW_021162599.1 5555 59.25% 488
NW_021162621.1 710 7.27% 57
NW_021162643.1 8360 32.89% 689
NW_021162814.1 390 3.15% 35
NW_021162871.1 1400 10.08% 120
NW_021163002.1 40 0.25% 4
2536 contigs with no values (90164661 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 110623167 1 150 12.16 10
global segment-length histogram

Files

Filename Size md5
AMY-SLEA-BNST_GABA.bw 681.55 MB 9d4ca9375ed536db3988cd0b8a135982
genomic_resource.yaml 1.13 KB 7c8c08132392d15c48d6baffb545d63e
statistics/