Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/Endo/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for Endo cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: Endo
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_Endo float

johansen2025Crossspecies_atac_macaque_Endo

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_Endo [0.124, 450]
n
489,341,942
mean
0.229
sd
0.668

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 48934194216.47% 41831486
NC_005943.1 3070 18.53% 290
NC_027914.1 684730 5.83% 63181
NC_041754.1 41919590 18.75% 3564992
NC_041755.1 33140590 16.89% 2839885
NC_041756.1 31932940 17.23% 2729940
NC_041757.1 28973860 17.05% 2481726
NC_041758.1 28250110 15.08% 2443669
NC_041759.1 28564270 15.95% 2457729
NC_041760.1 30764480 18.11% 2622067
NC_041761.1 22928520 15.74% 1974772
NC_041762.1 23404370 17.45% 1997083
NC_041763.1 20502520 20.60% 1725809
NC_041764.1 23734580 17.84% 2025686
NC_041765.1 21611050 16.62% 1853214
NC_041766.1 18807540 17.30% 1607948
NC_041767.1 23663910 18.48% 2012955
NC_041768.1 20494070 18.09% 1746076
NC_041769.1 18034560 22.65% 1509957
NC_041770.1 15304890 16.04% 1315671
NC_041771.1 11790720 15.83% 1014786
NC_041772.1 14542700 24.94% 1213212
NC_041773.1 15981510 20.72% 1347439
NC_041774.1 13182490 8.59% 1184298
NW_021160097.1 100 0.27% 10
NW_021160098.1 1070 2.68% 100
NW_021160099.1 210 0.52% 20
NW_021160102.1 1040 2.07% 94
NW_021160105.1 590 1.08% 52
NW_021160106.1 1130 2.03% 102
NW_021160107.1 590 1.06% 57
NW_021160109.1 3650 4.43% 334
NW_021160110.1 9890 8.37% 852
NW_021160111.1 7750 5.83% 719
NW_021160113.1 32610 28.03% 2768
NW_021160114.1 3050 4.63% 264
NW_021160116.1 1480 4.18% 128
NW_021160121.1 560 0.65% 55
NW_021160122.1 1980 2.15% 183
NW_021160123.1 1390 2.63% 122
NW_021160125.1 120 0.47% 11
NW_021160136.1 760 1.27% 71
NW_021160140.1 3360 2.58% 299
NW_021160141.1 3130 2.33% 289
NW_021160142.1 5680 11.88% 481
NW_021160144.1 100530 8.17% 9239
NW_021160145.1 330 1.23% 32
NW_021160147.1 2480 8.26% 218
NW_021160148.1 1250 3.64% 110
NW_021160150.1 1710 4.56% 153
NW_021160155.1 1690 3.10% 151
NW_021160158.1 1240 1.65% 111
NW_021160159.1 4500 5.25% 387
NW_021160161.1 39842 5.40% 3478
NW_021160167.1 260 0.69% 26
NW_021160168.1 270 0.65% 25
NW_021160175.1 20460 11.05% 1809
NW_021160179.1 710 1.83% 65
NW_021160182.1 1000 1.72% 90
NW_021160184.1 1540 2.51% 130
NW_021160185.1 580 0.93% 51
NW_021160186.1 3660 5.68% 322
NW_021160187.1 480 0.63% 45
NW_021160188.1 1210 1.46% 115
NW_021160189.1 4070 4.02% 342
NW_021160190.1 920 2.57% 86
NW_021160191.1 1310 4.70% 113
NW_021160193.1 140 0.45% 14
NW_021160196.1 4300 9.33% 367
NW_021160197.1 1380 2.66% 125
NW_021160199.1 940 1.68% 89
NW_021160200.1 1000 1.69% 93
NW_021160201.1 1260 2.05% 117
NW_021160202.1 510 0.78% 50
NW_021160203.1 3500 4.85% 320
NW_021160204.1 1620 2.22% 149
NW_021160205.1 400 0.55% 40
NW_021160206.1 1270 1.52% 114
NW_021160207.1 2800 2.83% 262
NW_021160209.1 9600 1.43% 842
NW_021160211.1 3830 2.87% 313
NW_021160220.1 1430 2.14% 130
NW_021160221.1 1550 2.19% 149
NW_021160222.1 720 0.94% 65
NW_021160223.1 7630 9.16% 631
NW_021160225.1 1590 2.95% 144
NW_021160226.1 2000 5.55% 182
NW_021160228.1 850 1.78% 79
NW_021160229.1 1340 2.79% 123
NW_021160231.1 1390 2.55% 124
NW_021160233.1 1250 1.93% 110
NW_021160234.1 6930 10.57% 576
NW_021160236.1 1290 1.66% 124
NW_021160237.1 7430 8.67% 667
NW_021160238.1 4910 4.70% 426
NW_021160239.1 500 1.71% 47
NW_021160242.1 810 2.74% 69
NW_021160243.1 120 0.38% 12
NW_021160244.1 8920 25.33% 731
NW_021160245.1 910 2.08% 87
NW_021160248.1 610 0.82% 60
NW_021160249.1 4600 6.08% 386
NW_021160250.1 540 0.84% 53
NW_021160251.1 1210 1.43% 117
NW_021160252.1 3150 3.55% 284
NW_021160255.1 1010 3.60% 93
NW_021160263.1 440 0.84% 41
NW_021160266.1 380 0.51% 38
NW_021160268.1 1340 1.98% 125
NW_021160270.1 810 2.33% 71
NW_021160271.1 1430 4.11% 127
NW_021160272.1 2480 7.09% 206
NW_021160273.1 580 1.44% 54
NW_021160277.1 100 0.22% 10
NW_021160278.1 990 1.78% 91
NW_021160279.1 1340 2.03% 119
NW_021160282.1 1670 1.35% 160
NW_021160284.1 180 0.52% 17
NW_021160285.1 360 0.81% 33
NW_021160291.1 340 0.75% 34
NW_021160293.1 4260 8.06% 364
NW_021160294.1 3270 4.11% 296
NW_021160295.1 1880 2.28% 171
NW_021160297.1 2530 4.50% 230
NW_021160298.1 750 2.75% 70
NW_021160300.1 4250 6.82% 357
NW_021160305.1 60 0.15% 6
NW_021160306.1 890 2.26% 78
NW_021160307.1 1870 3.55% 171
NW_021160308.1 1690 3.13% 153
NW_021160310.1 19210 32.97% 1652
NW_021160311.1 5650 7.17% 487
NW_021160312.1 5410 6.12% 465
NW_021160313.1 2440 2.58% 220
NW_021160319.1 650 1.50% 62
NW_021160320.1 1380 2.63% 124
NW_021160324.1 4180 6.57% 374
NW_021160325.1 1130 1.73% 106
NW_021160326.1 1180 1.81% 108
NW_021160327.1 2260 3.43% 197
NW_021160328.1 6260 9.89% 541
NW_021160329.1 1700 3.17% 152
NW_021160338.1 180 0.48% 18
NW_021160339.1 600 1.56% 53
NW_021160341.1 890 1.92% 84
NW_021160347.1 4490 2.72% 406
NW_021160353.1 4410 10.71% 357
NW_021160354.1 1320 3.14% 115
NW_021160355.1 1180 2.12% 113
NW_021160356.1 770 1.01% 68
NW_021160357.1 620 2.04% 51
NW_021160358.1 2060 5.22% 184
NW_021160359.1 3070 7.48% 256
NW_021160361.1 570 1.21% 57
NW_021160362.1 2090 3.89% 187
NW_021160363.1 5440 8.93% 475
NW_021160364.1 4270 6.91% 372
NW_021160365.1 3350 5.04% 284
NW_021160366.1 2960 4.15% 267
NW_021160367.1 6690 8.76% 581
NW_021160368.1 740 0.94% 71
NW_021160369.1 610 0.75% 58
NW_021160370.1 3620 4.05% 323
NW_021160371.1 1130 1.25% 106
NW_021160372.1 3870 2.88% 350
NW_021160373.1 2250 3.87% 203
NW_021160374.1 4220 3.39% 373
NW_021160375.1 7350 4.00% 666
NW_021160376.1 36870 4.27% 3330
NW_021160381.1 90 0.18% 9
NW_021160383.1 6110 8.86% 534
NW_021160384.1 440 0.55% 42
NW_021160401.1 340 2.09% 31
NW_021160410.1 2650 16.10% 213
NW_021160417.1 800 1.41% 73
NW_021160452.1 760 4.49% 70
NW_021160482.1 20 0.12% 2
NW_021160484.1 1690 9.71% 140
NW_021160495.1 23940 2.91% 2186
NW_021160514.1 250 1.39% 22
NW_021160523.1 140 0.77% 13
NW_021160525.1 470 2.59% 44
NW_021160535.1 970 5.29% 82
NW_021160549.1 230 1.24% 18
NW_021160573.1 2020 10.61% 163
NW_021160606.1 32760 3.26% 2881
NW_021160623.1 470 2.38% 40
NW_021160625.1 20 0.10% 2
NW_021160629.1 40 0.20% 4
NW_021160635.1 60 0.30% 6
NW_021160655.1 1780 8.65% 159
NW_021160656.1 170 0.83% 16
NW_021160678.1 100 0.48% 10
NW_021160682.1 4435 21.40% 352
NW_021160688.1 2370 11.61% 205
NW_021160701.1 3380 15.93% 290
NW_021160725.1 100 0.46% 10
NW_021160726.1 9730 44.74% 850
NW_021160734.1 230 1.06% 23
NW_021160770.1 9160 40.47% 814
NW_021160772.1 900 3.97% 79
NW_021160805.1 890 3.80% 82
NW_021160821.1 200 0.84% 18
NW_021160827.1 20990 2.86% 1738
NW_021160832.1 140 0.58% 14
NW_021160834.1 470 1.95% 43
NW_021160848.1 100 0.41% 10
NW_021160890.1 990 3.92% 91
NW_021160903.1 1636 6.18% 148
NW_021160919.1 210 0.81% 19
NW_021160925.1 120 0.46% 12
NW_021160946.1 1160 4.38% 97
NW_021160955.1 350 1.32% 32
NW_021160961.1 480 1.79% 43
NW_021160976.1 1440 5.29% 123
NW_021160983.1 80 0.29% 4
NW_021161026.1 20 0.07% 2
NW_021161033.1 60 0.21% 6
NW_021161038.1 1810 6.69% 160
NW_021161041.1 420 1.47% 40
NW_021161043.1 100 0.34% 8
NW_021161046.1 2970 10.07% 254
NW_021161062.1 250 0.84% 23
NW_021161066.1 2120 7.11% 179
NW_021161106.1 1090 3.56% 103
NW_021161107.1 410 1.33% 35
NW_021161113.1 1340 3.97% 127
NW_021161114.1 3400 11.02% 311
NW_021161131.1 100 0.32% 10
NW_021161133.1 1820 1.22% 167
NW_021161138.1 40 0.13% 4
NW_021161152.1 410 1.30% 33
NW_021161164.1 1180 3.65% 96
NW_021161166.1 4280 13.17% 368
NW_021161184.1 250 0.85% 23
NW_021161201.1 530 1.60% 50
NW_021161211.1 360 1.08% 34
NW_021161213.1 350 1.05% 34
NW_021161224.1 1840 5.46% 159
NW_021161226.1 2260 6.78% 184
NW_021161241.1 120 0.35% 11
NW_021161253.1 20 0.06% 2
NW_021161261.1 640 1.83% 54
NW_021161269.1 1100 3.13% 102
NW_021161282.1 4290 11.04% 358
NW_021161303.1 340 0.94% 34
NW_021161305.1 130 0.36% 12
NW_021161307.1 320 1.21% 32
NW_021161312.1 40 0.11% 4
NW_021161320.1 2320 2.36% 202
NW_021161336.1 460 1.25% 40
NW_021161338.1 240 0.65% 24
NW_021161340.1 350 0.95% 32
NW_021161348.1 960 2.56% 90
NW_021161355.1 1810 4.68% 151
NW_021161360.1 230 0.61% 22
NW_021161364.1 950 2.49% 84
NW_021161377.1 2920 7.34% 231
NW_021161379.1 110 0.29% 11
NW_021161380.1 40 0.13% 4
NW_021161385.1 120 0.31% 10
NW_021161392.1 2630 6.72% 224
NW_021161394.1 550 1.42% 47
NW_021161396.1 80 0.20% 8
NW_021161399.1 680 3.10% 63
NW_021161404.1 180 0.46% 18
NW_021161413.1 860 2.17% 78
NW_021161421.1 160 0.40% 16
NW_021161422.1 60 0.15% 5
NW_021161427.1 400 1.00% 39
NW_021161433.1 160 0.40% 16
NW_021161437.1 160 0.53% 16
NW_021161446.1 510 1.25% 48
NW_021161463.1 60 0.14% 6
NW_021161468.1 570 1.36% 51
NW_021161470.1 110 0.26% 11
NW_021161483.1 20 0.05% 2
NW_021161486.1 3060 7.19% 249
NW_021161494.1 210 0.49% 20
NW_021161497.1 350 0.82% 30
NW_021161505.1 1020 2.37% 92
NW_021161507.1 2070 4.78% 182
NW_021161508.1 2390 5.54% 215
NW_021161519.1 1490 3.40% 142
NW_021161520.1 3790 8.79% 333
NW_021161523.1 550 1.27% 51
NW_021161525.1 2810 6.38% 244
NW_021161526.1 1270 2.88% 119
NW_021161532.1 300 0.67% 28
NW_021161535.1 430 0.96% 42
NW_021161537.1 4290 9.67% 364
NW_021161545.1 5459 12.22% 443
NW_021161552.1 140 0.33% 12
NW_021161554.1 600 1.33% 60
NW_021161561.1 2180 4.82% 196
NW_021161562.1 3120 6.86% 254
NW_021161567.1 490 1.08% 47
NW_021161570.1 60 0.13% 5
NW_021161582.1 2390 5.20% 211
NW_021161585.1 2970 6.44% 259
NW_021161590.1 9170 19.93% 744
NW_021161593.1 3960 8.51% 345
NW_021161596.1 19400 3.60% 1639
NW_021161601.1 930 1.98% 90
NW_021161608.1 360 0.77% 33
NW_021161609.1 330 0.70% 31
NW_021161614.1 400 0.84% 39
NW_021161616.1 2960 6.19% 276
NW_021161617.1 220 0.46% 20
NW_021161627.1 890 2.66% 80
NW_021161633.1 3560 7.20% 322
NW_021161642.1 440 0.88% 43
NW_021161648.1 10170 19.99% 807
NW_021161679.1 790 1.52% 71
NW_021161680.1 870 1.68% 79
NW_021161686.1 7250 5.36% 609
NW_021161694.1 580 1.27% 50
NW_021161695.1 1410 2.64% 131
NW_021161696.1 840 1.58% 76
NW_021161699.1 2320 4.80% 199
NW_021161700.1 60 0.11% 6
NW_021161713.1 420 0.78% 41
NW_021161715.1 140 0.26% 14
NW_021161718.1 3010 5.52% 266
NW_021161725.1 470 1.49% 47
NW_021161737.1 900 1.61% 84
NW_021161743.1 560 1.00% 53
NW_021161747.1 140 0.25% 13
NW_021161754.1 4010 7.01% 353
NW_021161759.1 300 0.52% 29
NW_021161767.1 1570 1.54% 145
NW_021161769.1 1140 1.97% 105
NW_021161772.1 1050 1.42% 91
NW_021161784.1 820 15.93% 72
NW_021161790.1 3330 5.52% 296
NW_021161794.1 250 0.41% 25
NW_021161796.1 430 0.71% 43
NW_021161798.1 1790 3.80% 143
NW_021161830.1 1530 3.42% 141
NW_021161832.1 740 1.17% 64
NW_021161839.1 710 1.11% 65
NW_021161842.1 1530 2.35% 146
NW_021161843.1 1060 1.63% 98
NW_021161845.1 7520 11.50% 663
NW_021161850.1 107890 9.66% 9551
NW_021161853.1 4780 7.24% 391
NW_021161857.1 1370 2.06% 127
NW_021161862.1 1070 1.62% 102
NW_021161876.1 2530 3.71% 237
NW_021161878.1 1940 2.85% 172
NW_021161881.1 2350 3.90% 215
NW_021161888.1 2970 4.28% 248
NW_021161902.1 1490 2.30% 140
NW_021161927.1 850 1.14% 80
NW_021161934.1 1210 1.61% 114
NW_021161939.1 4190 5.53% 377
NW_021161954.1 1920 2.49% 171
NW_021161955.1 1470 1.90% 121
NW_021161956.1 6630 8.68% 569
NW_021161958.1 3340 4.25% 310
NW_021161961.1 2690 3.44% 246
NW_021161962.1 290 0.36% 26
NW_021161965.1 1210 1.53% 116
NW_021161996.1 1020 1.19% 93
NW_021162004.1 250 0.88% 24
NW_021162007.1 3530 4.02% 305
NW_021162009.1 13570 15.57% 1148
NW_021162025.1 2390 2.68% 203
NW_021162035.1 1050 1.13% 94
NW_021162047.1 910 0.95% 86
NW_021162055.1 4970 5.00% 438
NW_021162083.1 7650 4.44% 689
NW_021162091.1 6410 5.65% 520
NW_021162100.1 8290 6.60% 688
NW_021162108.1 3210 10.07% 279
NW_021162157.1 510 0.85% 43
NW_021162208.1 700 0.28% 66
NW_021162222.1 1760 4.65% 167
NW_021162226.1 1570 3.60% 142
NW_021162246.1 7930 7.51% 713
NW_021162251.1 4710 6.59% 419
NW_021162263.1 400 1.51% 38
NW_021162265.1 2810 7.27% 241
NW_021162274.1 9430 9.29% 816
NW_021162277.1 350 1.41% 33
NW_021162463.1 120 1.59% 9
NW_021162495.1 40 0.61% 4
NW_021162553.1 20 0.23% 2
NW_021162593.1 40 0.43% 4
NW_021162599.1 1510 16.11% 121
NW_021162621.1 190 1.94% 18
NW_021162643.1 2740 10.78% 244
NW_021162814.1 280 2.26% 25
NW_021162871.1 140 1.01% 11
NW_021163002.1 40 0.25% 4
2545 contigs with no values (90382457 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 41831486 2 140 11.7 10
global segment-length histogram

Files

Filename Size md5
Endo.bw 244.08 MB 2c8a040f0e9cc0cb0b2961bb2ae7e0c4
genomic_resource.yaml 1.08 KB 67ffea9db7878141b3cf60f85802bbd2
statistics/