Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/Ependymal/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for Ependymal cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: Ependymal
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_Ependymal float

johansen2025Crossspecies_atac_macaque_Ependymal

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_Ependymal [0.129, 344]
n
448,504,466
mean
0.251
sd
0.632

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 44850446615.09% 38460600
NC_005943.1 2490 15.03% 231
NC_027914.1 587640 5.00% 54302
NC_041754.1 39987920 17.88% 3405810
NC_041755.1 29255340 14.91% 2523676
NC_041756.1 28165550 15.20% 2422907
NC_041757.1 26419890 15.54% 2273142
NC_041758.1 24000970 12.81% 2095491
NC_041759.1 24944100 13.93% 2162030
NC_041760.1 28949720 17.04% 2471477
NC_041761.1 21225680 14.57% 1834297
NC_041762.1 21789480 16.25% 1861410
NC_041763.1 18965880 19.06% 1596192
NC_041764.1 21550880 16.20% 1845784
NC_041765.1 19891840 15.30% 1713224
NC_041766.1 17626810 16.21% 1510965
NC_041767.1 23049470 18.00% 1957681
NC_041768.1 19573920 17.28% 1669317
NC_041769.1 18340400 23.03% 1535173
NC_041770.1 12753310 13.36% 1107653
NC_041771.1 11023260 14.80% 950547
NC_041772.1 12843760 22.02% 1075361
NC_041773.1 14877850 19.29% 1256440
NC_041774.1 11802450 7.69% 1059685
NW_021160097.1 140 0.38% 13
NW_021160098.1 740 1.85% 63
NW_021160099.1 230 0.57% 21
NW_021160102.1 750 1.49% 70
NW_021160105.1 430 0.78% 41
NW_021160106.1 1180 2.12% 110
NW_021160107.1 530 0.95% 51
NW_021160109.1 2320 2.82% 211
NW_021160110.1 8650 7.32% 740
NW_021160111.1 8190 6.16% 740
NW_021160113.1 32040 27.54% 2806
NW_021160114.1 3320 5.04% 299
NW_021160116.1 310 0.88% 30
NW_021160121.1 730 0.85% 68
NW_021160122.1 1540 1.67% 146
NW_021160123.1 2470 4.67% 214
NW_021160125.1 60 0.24% 6
NW_021160136.1 1370 2.29% 120
NW_021160140.1 1620 1.24% 152
NW_021160141.1 2050 1.53% 195
NW_021160142.1 3910 8.18% 343
NW_021160144.1 56609 4.60% 5329
NW_021160145.1 520 1.93% 48
NW_021160147.1 470 1.56% 46
NW_021160148.1 2170 6.32% 184
NW_021160150.1 2060 5.49% 193
NW_021160155.1 1640 3.01% 138
NW_021160158.1 1900 2.52% 169
NW_021160159.1 1580 1.84% 154
NW_021160161.1 22912 3.10% 2030
NW_021160167.1 310 0.82% 28
NW_021160168.1 140 0.34% 14
NW_021160175.1 13110 7.08% 1214
NW_021160179.1 290 0.75% 28
NW_021160182.1 1550 2.67% 140
NW_021160184.1 1030 1.68% 95
NW_021160185.1 380 0.61% 36
NW_021160186.1 3290 5.10% 294
NW_021160187.1 670 0.88% 63
NW_021160188.1 1400 1.69% 132
NW_021160189.1 2390 2.36% 212
NW_021160190.1 620 1.74% 59
NW_021160191.1 1290 4.63% 110
NW_021160193.1 20 0.06% 2
NW_021160196.1 4830 10.48% 416
NW_021160197.1 1290 2.49% 118
NW_021160199.1 1200 2.15% 114
NW_021160200.1 1870 3.17% 164
NW_021160201.1 2700 4.39% 238
NW_021160202.1 700 1.07% 64
NW_021160203.1 2260 3.13% 209
NW_021160204.1 2100 2.88% 190
NW_021160205.1 450 0.61% 43
NW_021160206.1 1620 1.93% 140
NW_021160207.1 4730 4.79% 420
NW_021160209.1 7640 1.14% 675
NW_021160211.1 3580 2.69% 302
NW_021160220.1 1930 2.89% 174
NW_021160221.1 1470 2.07% 139
NW_021160222.1 570 0.75% 54
NW_021160223.1 4360 5.23% 370
NW_021160225.1 2490 4.63% 220
NW_021160226.1 1830 5.08% 161
NW_021160228.1 820 1.71% 76
NW_021160229.1 830 1.73% 78
NW_021160231.1 810 1.49% 76
NW_021160233.1 1060 1.64% 96
NW_021160234.1 5700 8.70% 473
NW_021160236.1 760 0.98% 75
NW_021160237.1 3050 3.56% 269
NW_021160238.1 3580 3.43% 322
NW_021160239.1 650 2.23% 59
NW_021160242.1 800 2.71% 71
NW_021160243.1 80 0.25% 8
NW_021160244.1 5720 16.24% 481
NW_021160245.1 690 1.58% 63
NW_021160248.1 840 1.12% 78
NW_021160249.1 2210 2.92% 194
NW_021160250.1 420 0.65% 33
NW_021160251.1 2360 2.80% 218
NW_021160252.1 3500 3.95% 312
NW_021160255.1 1240 4.42% 107
NW_021160263.1 150 0.29% 14
NW_021160266.1 300 0.40% 29
NW_021160268.1 750 1.11% 70
NW_021160270.1 1480 4.25% 130
NW_021160271.1 730 2.10% 65
NW_021160272.1 2010 5.74% 170
NW_021160273.1 630 1.57% 59
NW_021160277.1 160 0.36% 16
NW_021160278.1 930 1.67% 88
NW_021160279.1 1770 2.68% 162
NW_021160282.1 2210 1.79% 199
NW_021160284.1 260 0.75% 22
NW_021160285.1 770 1.73% 69
NW_021160291.1 280 0.62% 28
NW_021160293.1 2210 4.18% 199
NW_021160294.1 2510 3.15% 227
NW_021160295.1 1360 1.65% 129
NW_021160297.1 1870 3.33% 167
NW_021160298.1 690 2.53% 64
NW_021160300.1 3020 4.85% 253
NW_021160305.1 80 0.20% 8
NW_021160306.1 1480 3.75% 134
NW_021160307.1 1500 2.85% 137
NW_021160308.1 2320 4.30% 205
NW_021160310.1 15070 25.87% 1328
NW_021160311.1 5930 7.53% 519
NW_021160312.1 5080 5.75% 439
NW_021160313.1 4210 4.45% 381
NW_021160319.1 540 1.24% 54
NW_021160320.1 1060 2.02% 99
NW_021160324.1 3720 5.85% 324
NW_021160325.1 600 0.92% 59
NW_021160326.1 1310 2.01% 122
NW_021160327.1 2230 3.38% 196
NW_021160328.1 6550 10.34% 544
NW_021160329.1 960 1.79% 84
NW_021160338.1 140 0.37% 14
NW_021160339.1 180 0.47% 18
NW_021160341.1 650 1.40% 61
NW_021160347.1 3730 2.26% 351
NW_021160353.1 3180 7.72% 281
NW_021160354.1 1250 2.98% 110
NW_021160355.1 1110 2.00% 103
NW_021160356.1 850 1.11% 79
NW_021160357.1 180 0.59% 17
NW_021160358.1 1720 4.36% 149
NW_021160359.1 1260 3.07% 115
NW_021160361.1 460 0.98% 45
NW_021160362.1 1250 2.33% 105
NW_021160363.1 2990 4.91% 272
NW_021160364.1 2500 4.04% 209
NW_021160365.1 2050 3.09% 183
NW_021160366.1 2450 3.44% 225
NW_021160367.1 4490 5.88% 399
NW_021160368.1 490 0.62% 43
NW_021160369.1 570 0.70% 56
NW_021160370.1 3960 4.42% 341
NW_021160371.1 480 0.53% 45
NW_021160372.1 4090 3.04% 363
NW_021160373.1 1440 2.48% 135
NW_021160374.1 3560 2.86% 326
NW_021160375.1 7020 3.82% 637
NW_021160376.1 23080 2.67% 2123
NW_021160381.1 120 0.25% 12
NW_021160383.1 4920 7.13% 427
NW_021160384.1 380 0.48% 37
NW_021160401.1 320 1.97% 31
NW_021160410.1 2350 14.28% 185
NW_021160417.1 840 1.48% 76
NW_021160452.1 480 2.84% 42
NW_021160484.1 900 5.17% 80
NW_021160495.1 9990 1.21% 955
NW_021160514.1 660 3.66% 58
NW_021160523.1 160 0.89% 14
NW_021160525.1 420 2.32% 36
NW_021160535.1 920 5.02% 83
NW_021160549.1 450 2.42% 37
NW_021160573.1 1860 9.77% 148
NW_021160606.1 16260 1.62% 1502
NW_021160623.1 460 2.32% 40
NW_021160629.1 30 0.15% 3
NW_021160635.1 60 0.30% 6
NW_021160655.1 900 4.37% 85
NW_021160656.1 230 1.12% 22
NW_021160678.1 80 0.39% 7
NW_021160682.1 5155 24.87% 430
NW_021160688.1 1680 8.23% 146
NW_021160701.1 3210 15.13% 272
NW_021160725.1 60 0.28% 6
NW_021160726.1 9410 43.27% 813
NW_021160734.1 170 0.78% 17
NW_021160757.1 20 0.09% 2
NW_021160770.1 8270 36.54% 697
NW_021160772.1 930 4.10% 82
NW_021160805.1 1590 6.78% 139
NW_021160821.1 80 0.33% 8
NW_021160827.1 18790 2.56% 1562
NW_021160832.1 110 0.46% 11
NW_021160834.1 360 1.49% 35
NW_021160848.1 60 0.25% 5
NW_021160868.1 40 0.16% 4
NW_021160890.1 450 1.78% 37
NW_021160903.1 1590 6.00% 134
NW_021160919.1 310 1.19% 27
NW_021160925.1 200 0.77% 18
NW_021160946.1 1000 3.78% 91
NW_021160955.1 320 1.21% 32
NW_021160961.1 480 1.79% 47
NW_021160976.1 1320 4.85% 116
NW_021160983.1 50 0.18% 5
NW_021161033.1 20 0.07% 2
NW_021161038.1 1520 5.62% 134
NW_021161041.1 240 0.84% 23
NW_021161043.1 40 0.14% 4
NW_021161046.1 2180 7.39% 187
NW_021161062.1 160 0.54% 15
NW_021161066.1 1610 5.40% 137
NW_021161106.1 570 1.86% 52
NW_021161107.1 270 0.88% 24
NW_021161113.1 580 1.72% 52
NW_021161114.1 3020 9.79% 261
NW_021161133.1 1420 0.96% 134
NW_021161138.1 80 0.26% 8
NW_021161152.1 410 1.30% 38
NW_021161164.1 890 2.75% 73
NW_021161166.1 1860 5.72% 173
NW_021161184.1 210 0.71% 19
NW_021161201.1 580 1.75% 50
NW_021161211.1 610 1.83% 59
NW_021161213.1 120 0.36% 12
NW_021161224.1 1090 3.23% 103
NW_021161226.1 1830 5.49% 153
NW_021161241.1 200 0.58% 20
NW_021161253.1 20 0.06% 2
NW_021161261.1 500 1.43% 44
NW_021161269.1 1230 3.50% 115
NW_021161282.1 5090 13.09% 418
NW_021161303.1 270 0.75% 24
NW_021161305.1 120 0.33% 11
NW_021161307.1 180 0.68% 17
NW_021161312.1 100 0.28% 10
NW_021161320.1 2270 2.31% 207
NW_021161336.1 430 1.17% 39
NW_021161338.1 340 0.91% 32
NW_021161340.1 450 1.22% 40
NW_021161348.1 1840 4.91% 154
NW_021161355.1 1540 3.99% 133
NW_021161360.1 210 0.56% 17
NW_021161364.1 910 2.38% 78
NW_021161377.1 2520 6.34% 223
NW_021161379.1 80 0.21% 8
NW_021161380.1 40 0.13% 4
NW_021161385.1 40 0.10% 4
NW_021161392.1 2690 6.88% 239
NW_021161394.1 830 2.14% 67
NW_021161396.1 20 0.05% 2
NW_021161399.1 2200 10.04% 188
NW_021161404.1 160 0.41% 14
NW_021161413.1 900 2.27% 82
NW_021161421.1 40 0.10% 4
NW_021161422.1 40 0.10% 3
NW_021161427.1 420 1.05% 40
NW_021161433.1 130 0.32% 13
NW_021161437.1 280 0.93% 28
NW_021161446.1 200 0.49% 20
NW_021161463.1 40 0.10% 3
NW_021161468.1 340 0.81% 34
NW_021161470.1 80 0.19% 8
NW_021161483.1 40 0.09% 4
NW_021161486.1 1440 3.38% 123
NW_021161494.1 140 0.33% 14
NW_021161497.1 240 0.56% 20
NW_021161505.1 670 1.55% 64
NW_021161507.1 950 2.19% 90
NW_021161508.1 4700 10.89% 386
NW_021161519.1 1460 3.33% 133
NW_021161520.1 3030 7.03% 270
NW_021161523.1 550 1.27% 52
NW_021161525.1 2100 4.77% 184
NW_021161526.1 1070 2.43% 94
NW_021161532.1 180 0.40% 15
NW_021161535.1 260 0.58% 24
NW_021161537.1 3240 7.30% 292
NW_021161545.1 4280 9.58% 338
NW_021161552.1 120 0.28% 12
NW_021161554.1 890 1.97% 85
NW_021161561.1 3340 7.39% 286
NW_021161562.1 2230 4.90% 201
NW_021161567.1 460 1.01% 42
NW_021161570.1 40 0.09% 4
NW_021161582.1 2050 4.46% 183
NW_021161585.1 3150 6.84% 276
NW_021161590.1 7540 16.39% 612
NW_021161593.1 3260 7.01% 290
NW_021161596.1 15610 2.90% 1340
NW_021161601.1 950 2.02% 86
NW_021161608.1 350 0.75% 32
NW_021161609.1 180 0.38% 16
NW_021161614.1 610 1.28% 58
NW_021161616.1 2660 5.56% 250
NW_021161617.1 100 0.21% 9
NW_021161627.1 780 2.33% 71
NW_021161633.1 3180 6.44% 286
NW_021161642.1 390 0.78% 36
NW_021161648.1 11100 21.81% 903
NW_021161679.1 810 1.55% 78
NW_021161680.1 740 1.43% 70
NW_021161686.1 5900 4.36% 487
NW_021161694.1 480 1.06% 44
NW_021161695.1 830 1.55% 80
NW_021161696.1 560 1.06% 54
NW_021161699.1 1940 4.01% 171
NW_021161700.1 170 0.32% 14
NW_021161713.1 270 0.50% 26
NW_021161715.1 100 0.18% 10
NW_021161718.1 2620 4.81% 231
NW_021161725.1 670 2.13% 66
NW_021161737.1 980 1.75% 91
NW_021161743.1 350 0.63% 34
NW_021161747.1 70 0.12% 6
NW_021161754.1 5170 9.04% 435
NW_021161759.1 210 0.37% 20
NW_021161767.1 1350 1.32% 120
NW_021161769.1 880 1.52% 77
NW_021161772.1 970 1.31% 86
NW_021161784.1 190 3.69% 19
NW_021161790.1 4740 7.85% 409
NW_021161794.1 280 0.46% 25
NW_021161796.1 540 0.89% 54
NW_021161798.1 880 1.87% 74
NW_021161830.1 1100 2.46% 107
NW_021161832.1 380 0.60% 36
NW_021161839.1 490 0.77% 46
NW_021161842.1 1100 1.69% 104
NW_021161843.1 700 1.07% 68
NW_021161845.1 6370 9.74% 551
NW_021161850.1 56370 5.05% 5149
NW_021161853.1 4250 6.44% 367
NW_021161857.1 630 0.95% 63
NW_021161862.1 550 0.83% 54
NW_021161876.1 1980 2.90% 185
NW_021161878.1 1690 2.49% 158
NW_021161881.1 1940 3.22% 170
NW_021161888.1 2630 3.79% 224
NW_021161902.1 1830 2.82% 161
NW_021161927.1 740 0.99% 67
NW_021161934.1 1040 1.38% 92
NW_021161939.1 4540 5.99% 405
NW_021161954.1 2010 2.61% 184
NW_021161955.1 2080 2.68% 179
NW_021161956.1 6520 8.54% 548
NW_021161958.1 3300 4.20% 302
NW_021161961.1 2040 2.61% 191
NW_021161962.1 430 0.54% 36
NW_021161965.1 880 1.11% 80
NW_021161996.1 960 1.12% 93
NW_021162004.1 230 0.81% 20
NW_021162007.1 1340 1.52% 127
NW_021162009.1 20550 23.57% 1719
NW_021162025.1 1940 2.18% 174
NW_021162035.1 840 0.90% 79
NW_021162047.1 790 0.83% 76
NW_021162055.1 4070 4.09% 371
NW_021162083.1 3360 1.95% 315
NW_021162091.1 5910 5.21% 494
NW_021162100.1 7350 5.85% 617
NW_021162108.1 3400 10.67% 286
NW_021162157.1 690 1.15% 61
NW_021162208.1 460 0.18% 44
NW_021162222.1 1040 2.75% 95
NW_021162226.1 560 1.28% 52
NW_021162246.1 6610 6.26% 608
NW_021162251.1 5880 8.23% 502
NW_021162263.1 150 0.57% 14
NW_021162265.1 4880 12.63% 419
NW_021162274.1 10700 10.54% 927
NW_021162277.1 900 3.62% 82
NW_021162463.1 210 2.78% 18
NW_021162495.1 40 0.61% 4
NW_021162553.1 40 0.46% 4
NW_021162593.1 80 0.86% 8
NW_021162599.1 1240 13.23% 110
NW_021162621.1 140 1.43% 14
NW_021162643.1 2420 9.52% 210
NW_021162814.1 180 1.45% 17
NW_021162871.1 230 1.66% 21
2548 contigs with no values (90447968 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 38460600 2 150 11.66 10
global segment-length histogram

Files

Filename Size md5
Ependymal.bw 231.21 MB 5b621b7cdedab55a3f56763657a46c1a
genomic_resource.yaml 1.1 KB 0cd362d9cf3e07fffdaf7579b5ca9925
statistics/