Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/GPe_MEIS2-SOX6_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for GPe_MEIS2-SOX6_GABA cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: GPe_MEIS2-SOX6_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_GPe_MEIS2-SOX6_GABA float

johansen2025Crossspecies_atac_macaque_GPe_MEIS2-SOX6_GABA

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_GPe_MEIS2-SOX6_GABA [0.0857, 58.4]
n
1,236,422,580
mean
0.212
sd
0.326

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 123642258041.61% 101750893
NC_005943.1 1750 10.57% 161
NC_027914.1 1257270 10.70% 107746
NC_041754.1 106042920 47.42% 8739594
NC_041755.1 84992140 43.32% 6976074
NC_041756.1 82152000 44.34% 6753039
NC_041757.1 71073280 41.82% 5832325
NC_041758.1 70866410 37.83% 5816451
NC_041759.1 74337300 41.51% 6103334
NC_041760.1 79846450 47.00% 6573528
NC_041761.1 60597360 41.60% 4972597
NC_041762.1 60379800 45.02% 4961688
NC_041763.1 51364610 51.61% 4245143
NC_041764.1 59209300 44.50% 4869420
NC_041765.1 55782346 42.90% 4573450
NC_041766.1 48828510 44.91% 4013912
NC_041767.1 59585080 46.53% 4921223
NC_041768.1 50390400 44.48% 4149089
NC_041769.1 42153380 52.94% 3492496
NC_041770.1 37287440 39.07% 3059269
NC_041771.1 31465980 42.25% 2576536
NC_041772.1 28648470 49.13% 2384011
NC_041773.1 39317185 50.97% 3244821
NC_041774.1 38290450 24.96% 3168294
NW_021160097.1 440 1.19% 40
NW_021160098.1 1870 4.68% 171
NW_021160099.1 1060 2.62% 94
NW_021160102.1 3900 7.77% 318
NW_021160105.1 2280 4.16% 190
NW_021160106.1 5270 9.49% 440
NW_021160107.1 2320 4.17% 198
NW_021160109.1 6320 7.68% 553
NW_021160110.1 17380 14.71% 1511
NW_021160111.1 22020 16.55% 1827
NW_021160113.1 47720 41.02% 4096
NW_021160114.1 9450 14.34% 776
NW_021160116.1 1310 3.70% 115
NW_021160121.1 2340 2.71% 207
NW_021160122.1 5430 5.90% 476
NW_021160123.1 4060 7.67% 345
NW_021160125.1 300 1.19% 28
NW_021160136.1 4240 7.10% 361
NW_021160140.1 8680 6.66% 735
NW_021160141.1 8470 6.31% 728
NW_021160142.1 17970 37.58% 1492
NW_021160144.1 94690 7.70% 8550
NW_021160145.1 1460 5.43% 131
NW_021160147.1 1850 6.16% 155
NW_021160148.1 5740 16.73% 490
NW_021160150.1 2640 7.04% 231
NW_021160155.1 3620 6.64% 311
NW_021160158.1 3570 4.74% 298
NW_021160159.1 9040 10.54% 778
NW_021160161.1 89682 12.15% 7495
NW_021160167.1 540 1.43% 48
NW_021160168.1 930 2.23% 77
NW_021160175.1 64960 35.09% 5264
NW_021160179.1 2040 5.25% 177
NW_021160182.1 7510 12.93% 629
NW_021160184.1 2120 3.46% 188
NW_021160185.1 2030 3.27% 182
NW_021160186.1 8870 13.75% 749
NW_021160187.1 2570 3.36% 229
NW_021160188.1 6690 8.07% 572
NW_021160189.1 6250 6.17% 526
NW_021160190.1 6530 18.27% 528
NW_021160191.1 1570 5.64% 136
NW_021160193.1 400 1.28% 35
NW_021160196.1 11940 25.90% 989
NW_021160197.1 3820 7.37% 331
NW_021160199.1 2910 5.20% 260
NW_021160200.1 3760 6.37% 329
NW_021160201.1 9920 16.14% 814
NW_021160202.1 3600 5.50% 299
NW_021160203.1 7510 10.40% 647
NW_021160204.1 8330 11.44% 714
NW_021160205.1 4000 5.46% 352
NW_021160206.1 5440 6.49% 454
NW_021160207.1 7350 7.44% 639
NW_021160209.1 20720 3.09% 1765
NW_021160211.1 6600 4.95% 547
NW_021160220.1 10610 15.90% 894
NW_021160221.1 4640 6.55% 393
NW_021160222.1 1130 1.48% 106
NW_021160223.1 14980 17.98% 1268
NW_021160225.1 6780 12.59% 556
NW_021160226.1 3250 9.02% 286
NW_021160228.1 2490 5.21% 229
NW_021160229.1 2930 6.11% 252
NW_021160231.1 3190 5.85% 280
NW_021160233.1 4400 6.81% 359
NW_021160234.1 17110 26.10% 1470
NW_021160236.1 6490 8.34% 546
NW_021160237.1 16210 18.91% 1366
NW_021160238.1 14600 13.98% 1250
NW_021160239.1 1850 6.34% 151
NW_021160242.1 1880 6.36% 161
NW_021160243.1 840 2.66% 80
NW_021160244.1 19200 54.51% 1688
NW_021160245.1 1870 4.27% 156
NW_021160248.1 2450 3.28% 213
NW_021160249.1 6420 8.48% 550
NW_021160250.1 1740 2.71% 152
NW_021160251.1 7760 9.19% 658
NW_021160252.1 12210 13.78% 989
NW_021160255.1 2670 9.51% 225
NW_021160263.1 1700 3.23% 151
NW_021160266.1 1930 2.57% 178
NW_021160268.1 3070 4.53% 269
NW_021160270.1 4150 11.92% 342
NW_021160271.1 1930 5.55% 163
NW_021160272.1 4360 12.46% 371
NW_021160273.1 1860 4.63% 158
NW_021160277.1 450 1.00% 40
NW_021160278.1 5920 10.64% 481
NW_021160279.1 4940 7.49% 426
NW_021160282.1 14040 11.35% 1166
NW_021160284.1 1320 3.79% 109
NW_021160285.1 2520 5.65% 224
NW_021160291.1 610 1.35% 57
NW_021160293.1 6830 12.93% 581
NW_021160294.1 9330 11.72% 786
NW_021160295.1 6270 7.60% 530
NW_021160297.1 5440 9.68% 447
NW_021160298.1 3000 11.01% 248
NW_021160300.1 8740 14.03% 731
NW_021160305.1 900 2.23% 79
NW_021160306.1 3080 7.80% 263
NW_021160307.1 6140 11.65% 519
NW_021160308.1 5280 9.79% 435
NW_021160310.1 21310 36.58% 1874
NW_021160311.1 12920 16.41% 1088
NW_021160312.1 10850 12.27% 930
NW_021160313.1 9590 10.13% 812
NW_021160319.1 4790 11.03% 396
NW_021160320.1 4270 8.13% 350
NW_021160324.1 8850 13.91% 733
NW_021160325.1 6570 10.08% 546
NW_021160326.1 4750 7.29% 392
NW_021160327.1 6180 9.37% 547
NW_021160328.1 12580 19.87% 1077
NW_021160329.1 6800 12.66% 558
NW_021160338.1 1650 4.40% 147
NW_021160339.1 470 1.22% 45
NW_021160341.1 4160 8.98% 359
NW_021160347.1 16580 10.03% 1423
NW_021160353.1 5310 12.90% 447
NW_021160354.1 1960 4.67% 183
NW_021160355.1 3810 6.86% 324
NW_021160356.1 3010 3.94% 265
NW_021160357.1 840 2.76% 75
NW_021160358.1 4760 12.06% 407
NW_021160359.1 4990 12.15% 420
NW_021160361.1 1640 3.48% 145
NW_021160362.1 1880 3.50% 161
NW_021160363.1 6160 10.11% 528
NW_021160364.1 6280 10.16% 531
NW_021160365.1 6280 9.45% 546
NW_021160366.1 6900 9.68% 593
NW_021160367.1 13410 17.55% 1121
NW_021160368.1 1890 2.39% 171
NW_021160369.1 2040 2.49% 178
NW_021160370.1 9120 10.19% 771
NW_021160371.1 3850 4.26% 345
NW_021160372.1 16710 12.43% 1398
NW_021160373.1 10960 18.85% 912
NW_021160374.1 11050 8.89% 968
NW_021160375.1 25070 13.64% 2099
NW_021160376.1 79160 9.17% 6768
NW_021160381.1 520 1.07% 47
NW_021160383.1 17057 24.72% 1455
NW_021160384.1 2450 3.08% 215
NW_021160401.1 650 3.99% 59
NW_021160410.1 6840 41.57% 606
NW_021160417.1 1540 2.72% 130
NW_021160452.1 1460 8.62% 121
NW_021160482.1 420 2.43% 33
NW_021160484.1 2020 11.61% 161
NW_021160495.1 71710 8.70% 6184
NW_021160514.1 1590 8.82% 140
NW_021160523.1 810 4.48% 71
NW_021160525.1 1260 6.95% 110
NW_021160535.1 2050 11.19% 179
NW_021160549.1 2020 10.88% 172
NW_021160573.1 4050 21.28% 341
NW_021160589.1 60 0.31% 6
NW_021160606.1 45960 4.57% 3961
NW_021160623.1 900 4.55% 75
NW_021160625.1 240 1.21% 19
NW_021160629.1 280 1.41% 24
NW_021160635.1 190 0.95% 18
NW_021160655.1 2460 11.96% 214
NW_021160656.1 1030 5.03% 89
NW_021160678.1 380 1.83% 37
NW_021160682.1 9075 43.79% 731
NW_021160688.1 3520 17.24% 300
NW_021160701.1 5390 25.41% 461
NW_021160725.1 340 1.57% 31
NW_021160726.1 12480 57.38% 1147
NW_021160734.1 550 2.53% 47
NW_021160757.1 130 0.59% 9
NW_021160770.1 11610 51.30% 1080
NW_021160772.1 1530 6.75% 128
NW_021160805.1 5700 24.31% 475
NW_021160821.1 310 1.30% 29
NW_021160827.1 41960 5.72% 3562
NW_021160832.1 280 1.16% 27
NW_021160834.1 1450 6.01% 124
NW_021160848.1 80 0.33% 8
NW_021160868.1 40 0.16% 4
NW_021160890.1 1560 6.18% 137
NW_021160903.1 4226 15.96% 327
NW_021160919.1 1060 4.07% 90
NW_021160925.1 430 1.65% 42
NW_021160946.1 2170 8.20% 192
NW_021160955.1 1510 5.69% 134
NW_021160961.1 1410 5.27% 129
NW_021160976.1 5610 20.61% 456
NW_021160983.1 50 0.18% 5
NW_021160986.1 40 0.15% 4
NW_021161026.1 60 0.22% 6
NW_021161038.1 1480 5.47% 127
NW_021161041.1 1430 5.02% 119
NW_021161043.1 350 1.20% 31
NW_021161046.1 3120 10.57% 265
NW_021161062.1 510 1.72% 43
NW_021161066.1 6450 21.62% 535
NW_021161106.1 3070 10.02% 264
NW_021161107.1 560 1.82% 48
NW_021161113.1 4820 14.29% 396
NW_021161114.1 4090 13.26% 365
NW_021161131.1 40 0.13% 4
NW_021161133.1 3480 2.34% 309
NW_021161138.1 260 0.83% 24
NW_021161152.1 2000 6.36% 170
NW_021161164.1 2340 7.24% 193
NW_021161166.1 4550 14.00% 390
NW_021161184.1 650 2.20% 57
NW_021161201.1 1540 4.64% 129
NW_021161211.1 3050 9.14% 261
NW_021161213.1 200 0.60% 19
NW_021161224.1 5360 15.90% 442
NW_021161226.1 2990 8.97% 242
NW_021161241.1 520 1.52% 49
NW_021161253.1 90 0.26% 8
NW_021161261.1 1200 3.43% 113
NW_021161269.1 7100 20.23% 593
NW_021161274.1 40 0.12% 4
NW_021161282.1 15240 39.20% 1285
NW_021161303.1 400 1.11% 40
NW_021161305.1 420 1.16% 37
NW_021161307.1 1010 3.81% 87
NW_021161312.1 130 0.36% 12
NW_021161320.1 5010 5.10% 433
NW_021161336.1 3610 9.79% 317
NW_021161338.1 760 2.04% 74
NW_021161340.1 1500 4.08% 130
NW_021161348.1 3370 9.00% 275
NW_021161355.1 4490 11.62% 368
NW_021161360.1 450 1.20% 40
NW_021161364.1 1700 4.45% 148
NW_021161377.1 10189 25.63% 817
NW_021161379.1 70 0.18% 5
NW_021161380.1 110 0.35% 11
NW_021161385.1 300 0.77% 25
NW_021161392.1 6900 17.64% 611
NW_021161394.1 3440 8.86% 285
NW_021161396.1 80 0.20% 8
NW_021161399.1 2190 9.99% 185
NW_021161404.1 1010 2.56% 92
NW_021161413.1 2090 5.28% 188
NW_021161421.1 280 0.70% 25
NW_021161422.1 350 0.88% 28
NW_021161427.1 1720 4.29% 138
NW_021161433.1 270 0.67% 26
NW_021161437.1 540 1.80% 49
NW_021161446.1 1170 2.86% 107
NW_021161463.1 20 0.05% 2
NW_021161468.1 1750 4.17% 152
NW_021161470.1 390 0.93% 36
NW_021161483.1 80 0.19% 7
NW_021161486.1 4030 9.47% 327
NW_021161494.1 440 1.03% 35
NW_021161497.1 510 1.19% 49
NW_021161505.1 4610 10.70% 395
NW_021161507.1 4300 9.93% 380
NW_021161508.1 12720 29.48% 1056
NW_021161519.1 4230 9.64% 357
NW_021161520.1 3290 7.63% 297
NW_021161523.1 2090 4.83% 172
NW_021161525.1 9110 20.69% 748
NW_021161526.1 6020 13.67% 506
NW_021161532.1 450 1.01% 43
NW_021161535.1 750 1.68% 69
NW_021161537.1 9120 20.56% 763
NW_021161545.1 11990 26.84% 1061
NW_021161552.1 420 0.99% 39
NW_021161554.1 2810 6.22% 245
NW_021161561.1 7280 16.11% 612
NW_021161562.1 6500 14.30% 522
NW_021161567.1 1440 3.16% 127
NW_021161570.1 100 0.22% 10
NW_021161582.1 9640 20.98% 802
NW_021161585.1 10510 22.81% 874
NW_021161590.1 13040 28.34% 1064
NW_021161593.1 11720 25.19% 972
NW_021161596.1 38190 7.08% 3187
NW_021161601.1 2910 6.19% 261
NW_021161608.1 1350 2.89% 113
NW_021161609.1 550 1.17% 49
NW_021161614.1 1320 2.77% 123
NW_021161616.1 4610 9.63% 396
NW_021161617.1 100 0.21% 10
NW_021161627.1 4100 12.26% 337
NW_021161633.1 16540 33.47% 1346
NW_021161642.1 3010 6.05% 269
NW_021161648.1 16880 33.17% 1424
NW_021161679.1 4660 8.94% 376
NW_021161680.1 2120 4.10% 182
NW_021161686.1 13310 9.84% 1147
NW_021161694.1 970 2.13% 83
NW_021161695.1 1690 3.16% 156
NW_021161696.1 1540 2.90% 139
NW_021161699.1 6064 12.54% 502
NW_021161700.1 290 0.55% 27
NW_021161713.1 580 1.08% 52
NW_021161715.1 450 0.83% 42
NW_021161718.1 10490 19.25% 883
NW_021161725.1 4000 12.71% 332
NW_021161737.1 3650 6.54% 311
NW_021161743.1 1310 2.34% 121
NW_021161747.1 410 0.73% 37
NW_021161754.1 14610 25.55% 1242
NW_021161759.1 410 0.71% 38
NW_021161767.1 8710 8.53% 725
NW_021161769.1 2660 4.59% 228
NW_021161772.1 3590 4.86% 315
NW_021161784.1 940 18.26% 80
NW_021161790.1 14060 23.30% 1164
NW_021161794.1 780 1.29% 72
NW_021161796.1 1370 2.27% 126
NW_021161798.1 3030 6.44% 256
NW_021161830.1 4040 9.03% 347
NW_021161832.1 1190 1.88% 106
NW_021161839.1 1250 1.95% 109
NW_021161842.1 2780 4.26% 251
NW_021161843.1 2200 3.38% 195
NW_021161845.1 13820 21.13% 1151
NW_021161850.1 201741 18.06% 16942
NW_021161853.1 7100 10.76% 591
NW_021161857.1 4810 7.25% 397
NW_021161862.1 1970 2.98% 175
NW_021161876.1 10860 15.91% 903
NW_021161878.1 5630 8.28% 464
NW_021161881.1 9270 15.39% 764
NW_021161888.1 9270 13.35% 785
NW_021161902.1 10650 16.43% 899
NW_021161927.1 4520 6.04% 384
NW_021161934.1 7360 9.77% 619
NW_021161939.1 14540 19.20% 1237
NW_021161954.1 4550 5.90% 382
NW_021161955.1 4830 6.23% 397
NW_021161956.1 9130 11.95% 765
NW_021161958.1 14520 18.49% 1194
NW_021161961.1 7470 9.55% 647
NW_021161962.1 790 0.99% 68
NW_021161965.1 6170 7.81% 537
NW_021161996.1 3900 4.54% 330
NW_021162004.1 1310 4.61% 111
NW_021162007.1 3250 3.70% 282
NW_021162009.1 28440 32.62% 2430
NW_021162025.1 4950 5.55% 417
NW_021162035.1 2380 2.55% 213
NW_021162047.1 4970 5.19% 431
NW_021162055.1 8720 8.76% 746
NW_021162083.1 9470 5.50% 836
NW_021162091.1 13210 11.65% 1081
NW_021162100.1 11730 9.33% 1017
NW_021162108.1 12570 39.44% 1040
NW_021162157.1 1380 2.29% 123
NW_021162185.1 20 0.23% 2
NW_021162208.1 840 0.34% 82
NW_021162222.1 1820 4.81% 168
NW_021162226.1 910 2.08% 82
NW_021162246.1 31110 29.45% 2570
NW_021162251.1 24190 33.87% 1955
NW_021162253.1 290 0.93% 28
NW_021162263.1 420 1.59% 39
NW_021162265.1 9250 23.93% 768
NW_021162274.1 33560 33.05% 2823
NW_021162277.1 2770 11.14% 226
NW_021162460.1 20 0.27% 2
NW_021162463.1 310 4.11% 30
NW_021162495.1 410 6.22% 35
NW_021162553.1 430 4.96% 39
NW_021162593.1 80 0.86% 8
NW_021162599.1 4070 43.41% 329
NW_021162621.1 820 8.39% 63
NW_021162643.1 6705 26.38% 567
NW_021162814.1 370 2.98% 35
NW_021162871.1 1410 10.16% 115
NW_021163002.1 40 0.25% 4
2538 contigs with no values (90235784 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 101750893 1 160 12.15 10
global segment-length histogram

Files

Filename Size md5
GPe_MEIS2-SOX6_GABA.bw 645.49 MB 00f85c69f550c1f74bcb24005e09cf7d
genomic_resource.yaml 1.14 KB e9771a2f7015263b7e1a91488ad74739
statistics/