Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/GPe_SOX6-CTXND1_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for GPe_SOX6-CTXND1_GABA cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: GPe_SOX6-CTXND1_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_GPe_SOX6-CTXND1_GABA float

johansen2025Crossspecies_atac_macaque_GPe_SOX6-CTXND1_GABA

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_GPe_SOX6-CTXND1_GABA [0.0482, 58.6]
n
1,574,021,974
mean
0.162
sd
0.301

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 157402197452.97% 131546492
NC_005943.1 1880 11.35% 181
NC_027914.1 2294630 19.52% 190885
NC_041754.1 132737780 59.36% 11149280
NC_041755.1 108378550 55.24% 9025003
NC_041756.1 104202600 56.24% 8709361
NC_041757.1 92208420 54.25% 7665367
NC_041758.1 93974460 50.17% 7780781
NC_041759.1 95962270 53.58% 7982453
NC_041760.1 98561220 58.02% 8261106
NC_041761.1 78779960 54.08% 6560094
NC_041762.1 76550780 57.07% 6406733
NC_041763.1 61470220 61.77% 5192323
NC_041764.1 75009420 56.37% 6269982
NC_041765.1 71454766 54.95% 5945371
NC_041766.1 61965860 56.99% 5183504
NC_041767.1 74657280 58.30% 6277795
NC_041768.1 64001820 56.50% 5359630
NC_041769.1 50247014 63.10% 4261825
NC_041770.1 48841970 51.18% 4054690
NC_041771.1 40565280 54.47% 3373852
NC_041772.1 34438290 59.06% 2931518
NC_041773.1 47846665 62.03% 4039867
NC_041774.1 55838520 36.40% 4583270
NW_021160097.1 450 1.21% 40
NW_021160098.1 2760 6.90% 242
NW_021160099.1 1600 3.96% 140
NW_021160102.1 6240 12.43% 525
NW_021160105.1 3380 6.16% 289
NW_021160106.1 8770 15.79% 736
NW_021160107.1 3170 5.70% 268
NW_021160109.1 9600 11.66% 818
NW_021160110.1 21420 18.13% 1820
NW_021160111.1 32250 24.24% 2667
NW_021160113.1 55300 47.54% 4795
NW_021160114.1 11660 17.69% 985
NW_021160116.1 2120 5.99% 187
NW_021160121.1 3750 4.35% 327
NW_021160122.1 9040 9.82% 778
NW_021160123.1 5600 10.58% 493
NW_021160125.1 570 2.25% 51
NW_021160136.1 5450 9.12% 471
NW_021160140.1 12750 9.79% 1079
NW_021160141.1 13600 10.14% 1146
NW_021160142.1 22670 47.41% 1912
NW_021160144.1 218719 17.78% 18859
NW_021160145.1 2570 9.56% 197
NW_021160147.1 3200 10.65% 265
NW_021160148.1 7170 20.89% 604
NW_021160150.1 3210 8.56% 293
NW_021160155.1 4470 8.20% 389
NW_021160158.1 5740 7.62% 463
NW_021160159.1 16760 19.54% 1381
NW_021160161.1 144212 19.53% 11998
NW_021160167.1 1330 3.51% 115
NW_021160168.1 1350 3.24% 112
NW_021160175.1 69180 37.37% 5628
NW_021160179.1 3640 9.36% 321
NW_021160182.1 8340 14.36% 713
NW_021160184.1 5300 8.65% 457
NW_021160185.1 2840 4.57% 255
NW_021160186.1 11470 17.79% 936
NW_021160187.1 3580 4.69% 303
NW_021160188.1 8380 10.10% 683
NW_021160189.1 12040 11.88% 1025
NW_021160190.1 9530 26.67% 822
NW_021160191.1 2200 7.90% 177
NW_021160193.1 580 1.86% 55
NW_021160196.1 13330 28.91% 1110
NW_021160197.1 5370 10.36% 465
NW_021160199.1 5320 9.51% 451
NW_021160200.1 5480 9.29% 460
NW_021160201.1 12750 20.75% 1066
NW_021160202.1 4090 6.25% 340
NW_021160203.1 12000 16.62% 1012
NW_021160204.1 11220 15.40% 944
NW_021160205.1 6420 8.76% 552
NW_021160206.1 7010 8.37% 571
NW_021160207.1 12170 12.32% 1022
NW_021160209.1 40480 6.04% 3380
NW_021160211.1 14470 10.85% 1231
NW_021160220.1 13010 19.50% 1082
NW_021160221.1 8540 12.05% 732
NW_021160222.1 3320 4.35% 303
NW_021160223.1 17860 21.44% 1515
NW_021160225.1 12250 22.76% 1025
NW_021160226.1 5170 14.35% 436
NW_021160228.1 3070 6.42% 269
NW_021160229.1 6470 13.48% 532
NW_021160231.1 6000 11.01% 512
NW_021160233.1 5440 8.42% 452
NW_021160234.1 19300 29.44% 1682
NW_021160236.1 10900 14.01% 913
NW_021160237.1 26040 30.38% 2214
NW_021160238.1 18790 17.99% 1610
NW_021160239.1 2580 8.85% 214
NW_021160242.1 2190 7.41% 191
NW_021160243.1 1130 3.58% 101
NW_021160244.1 21150 60.05% 1908
NW_021160245.1 2060 4.71% 181
NW_021160248.1 3530 4.72% 303
NW_021160249.1 8360 11.04% 698
NW_021160250.1 3440 5.35% 300
NW_021160251.1 11720 13.88% 959
NW_021160252.1 16480 18.59% 1391
NW_021160255.1 3320 11.83% 286
NW_021160263.1 3350 6.37% 287
NW_021160266.1 2750 3.67% 256
NW_021160268.1 3570 5.27% 316
NW_021160270.1 4870 13.98% 418
NW_021160271.1 2170 6.24% 188
NW_021160272.1 5140 14.69% 453
NW_021160273.1 2940 7.31% 254
NW_021160277.1 1050 2.34% 101
NW_021160278.1 8950 16.09% 753
NW_021160279.1 7210 10.93% 612
NW_021160282.1 16660 13.47% 1400
NW_021160284.1 1690 4.86% 138
NW_021160285.1 3640 8.16% 309
NW_021160291.1 1470 3.25% 126
NW_021160293.1 8360 15.82% 710
NW_021160294.1 11960 15.02% 985
NW_021160295.1 8030 9.73% 695
NW_021160297.1 7550 13.43% 632
NW_021160298.1 3890 14.28% 324
NW_021160300.1 10340 16.60% 848
NW_021160305.1 1440 3.57% 130
NW_021160306.1 4010 10.16% 328
NW_021160307.1 7240 13.74% 585
NW_021160308.1 6710 12.44% 544
NW_021160310.1 23360 40.09% 2071
NW_021160311.1 15840 20.11% 1356
NW_021160312.1 14700 16.63% 1249
NW_021160313.1 14400 15.22% 1218
NW_021160319.1 7640 17.59% 638
NW_021160320.1 5820 11.07% 479
NW_021160324.1 10630 16.71% 904
NW_021160325.1 10170 15.61% 852
NW_021160326.1 7240 11.11% 619
NW_021160327.1 8510 12.90% 727
NW_021160328.1 14270 22.53% 1245
NW_021160329.1 8210 15.29% 684
NW_021160338.1 1690 4.50% 148
NW_021160339.1 880 2.28% 79
NW_021160341.1 7300 15.76% 620
NW_021160347.1 21980 13.30% 1859
NW_021160353.1 6620 16.08% 568
NW_021160354.1 2520 6.00% 224
NW_021160355.1 6210 11.18% 525
NW_021160356.1 4660 6.11% 405
NW_021160357.1 1300 4.27% 102
NW_021160358.1 5960 15.11% 497
NW_021160359.1 6370 15.52% 543
NW_021160361.1 2390 5.08% 212
NW_021160362.1 3720 6.93% 329
NW_021160363.1 8630 14.16% 737
NW_021160364.1 10030 16.23% 842
NW_021160365.1 9740 14.66% 849
NW_021160366.1 11580 16.25% 983
NW_021160367.1 16720 21.89% 1446
NW_021160368.1 3310 4.19% 294
NW_021160369.1 5340 6.53% 465
NW_021160370.1 12530 14.00% 1053
NW_021160371.1 6690 7.40% 570
NW_021160372.1 26180 19.47% 2191
NW_021160373.1 13160 22.63% 1112
NW_021160374.1 16940 13.63% 1465
NW_021160375.1 41660 22.66% 3430
NW_021160376.1 157960 18.31% 12961
NW_021160381.1 470 0.97% 41
NW_021160383.1 26807 38.85% 2293
NW_021160384.1 2670 3.35% 236
NW_021160401.1 1610 9.89% 140
NW_021160410.1 7630 46.37% 669
NW_021160417.1 3940 6.96% 316
NW_021160452.1 2710 16.01% 227
NW_021160482.1 490 2.84% 41
NW_021160484.1 3770 21.67% 310
NW_021160495.1 137610 16.70% 11747
NW_021160514.1 2130 11.82% 179
NW_021160523.1 670 3.71% 54
NW_021160525.1 2540 14.00% 224
NW_021160535.1 4020 21.93% 340
NW_021160549.1 2310 12.44% 202
NW_021160573.1 6640 34.88% 557
NW_021160589.1 200 1.04% 18
NW_021160606.1 98340 9.78% 8195
NW_021160623.1 1390 7.03% 115
NW_021160625.1 200 1.01% 20
NW_021160629.1 290 1.46% 24
NW_021160635.1 660 3.29% 57
NW_021160655.1 4980 24.21% 416
NW_021160656.1 1730 8.46% 150
NW_021160678.1 670 3.22% 55
NW_021160682.1 11165 53.87% 924
NW_021160688.1 3780 18.51% 315
NW_021160701.1 7546 35.57% 656
NW_021160725.1 680 3.14% 63
NW_021160726.1 14660 67.41% 1375
NW_021160734.1 880 4.04% 76
NW_021160757.1 130 0.59% 11
NW_021160770.1 14020 61.95% 1325
NW_021160772.1 2320 10.23% 184
NW_021160805.1 6940 29.60% 581
NW_021160821.1 850 3.55% 72
NW_021160827.1 66910 9.12% 5825
NW_021160832.1 730 3.03% 65
NW_021160834.1 2100 8.71% 185
NW_021160835.1 20 0.12% 2
NW_021160848.1 420 1.73% 33
NW_021160868.1 120 0.49% 11
NW_021160890.1 2880 11.41% 245
NW_021160903.1 6100 23.03% 492
NW_021160919.1 1560 5.99% 135
NW_021160925.1 820 3.14% 75
NW_021160946.1 2510 9.48% 215
NW_021160955.1 2840 10.70% 224
NW_021160961.1 1800 6.73% 155
NW_021160976.1 6850 25.17% 571
NW_021160983.1 280 1.03% 18
NW_021160986.1 40 0.15% 4
NW_021161026.1 80 0.29% 8
NW_021161033.1 80 0.28% 7
NW_021161038.1 2140 7.91% 190
NW_021161041.1 2150 7.54% 178
NW_021161043.1 820 2.81% 72
NW_021161046.1 4830 16.37% 417
NW_021161062.1 980 3.31% 85
NW_021161066.1 9230 30.93% 776
NW_021161106.1 5870 19.15% 487
NW_021161107.1 2050 6.66% 172
NW_021161113.1 6980 20.70% 584
NW_021161114.1 6540 21.20% 584
NW_021161131.1 220 0.70% 22
NW_021161133.1 7420 4.99% 652
NW_021161138.1 470 1.51% 42
NW_021161152.1 2520 8.01% 205
NW_021161164.1 4300 13.30% 360
NW_021161166.1 7980 24.56% 652
NW_021161184.1 1630 5.52% 138
NW_021161201.1 2450 7.38% 197
NW_021161211.1 3680 11.03% 310
NW_021161213.1 490 1.47% 46
NW_021161224.1 6200 18.39% 518
NW_021161226.1 5690 17.07% 491
NW_021161241.1 1020 2.97% 89
NW_021161247.1 60 0.18% 6
NW_021161253.1 290 0.84% 25
NW_021161261.1 1800 5.15% 155
NW_021161269.1 8800 25.07% 740
NW_021161274.1 40 0.12% 4
NW_021161282.1 17940 46.15% 1561
NW_021161303.1 1210 3.36% 111
NW_021161305.1 560 1.55% 52
NW_021161307.1 1170 4.41% 101
NW_021161312.1 360 1.01% 32
NW_021161320.1 12180 12.40% 1011
NW_021161336.1 5540 15.03% 468
NW_021161338.1 1490 4.01% 132
NW_021161340.1 2410 6.56% 208
NW_021161348.1 5390 14.40% 448
NW_021161355.1 7220 18.69% 604
NW_021161360.1 830 2.22% 70
NW_021161364.1 2820 7.38% 257
NW_021161377.1 15770 39.66% 1326
NW_021161379.1 390 1.02% 36
NW_021161380.1 330 1.04% 29
NW_021161385.1 960 2.47% 84
NW_021161392.1 9580 24.49% 850
NW_021161394.1 4100 10.56% 355
NW_021161396.1 340 0.87% 34
NW_021161399.1 2980 13.59% 256
NW_021161404.1 1610 4.08% 136
NW_021161413.1 3730 9.42% 314
NW_021161421.1 1110 2.79% 101
NW_021161422.1 420 1.06% 33
NW_021161427.1 2350 5.86% 190
NW_021161433.1 830 2.05% 73
NW_021161437.1 940 3.13% 81
NW_021161446.1 1690 4.13% 149
NW_021161463.1 100 0.24% 10
NW_021161468.1 3260 7.77% 276
NW_021161470.1 680 1.62% 61
NW_021161483.1 120 0.28% 11
NW_021161486.1 6660 15.65% 552
NW_021161494.1 1440 3.36% 123
NW_021161497.1 1050 2.45% 90
NW_021161505.1 7130 16.55% 604
NW_021161507.1 7360 17.00% 622
NW_021161508.1 16340 37.86% 1345
NW_021161519.1 8830 20.13% 720
NW_021161520.1 3620 8.40% 329
NW_021161523.1 3120 7.21% 263
NW_021161525.1 12840 29.16% 1080
NW_021161526.1 8000 18.16% 690
NW_021161532.1 1490 3.35% 129
NW_021161535.1 1610 3.61% 141
NW_021161537.1 14755 33.27% 1318
NW_021161545.1 15760 35.27% 1417
NW_021161552.1 1790 4.21% 150
NW_021161554.1 5540 12.27% 463
NW_021161561.1 9720 21.51% 828
NW_021161562.1 10890 23.95% 934
NW_021161567.1 3340 7.34% 283
NW_021161570.1 110 0.24% 10
NW_021161582.1 12670 27.58% 1089
NW_021161585.1 12720 27.60% 1079
NW_021161590.1 22420 48.73% 1899
NW_021161593.1 19330 41.54% 1639
NW_021161596.1 70750 13.12% 6017
NW_021161601.1 6830 14.52% 585
NW_021161608.1 2650 5.67% 238
NW_021161609.1 980 2.08% 85
NW_021161614.1 2200 4.61% 200
NW_021161616.1 6140 12.83% 543
NW_021161617.1 380 0.79% 35
NW_021161627.1 5250 15.70% 436
NW_021161633.1 21410 43.33% 1746
NW_021161642.1 5080 10.21% 437
NW_021161648.1 21200 41.66% 1842
NW_021161679.1 6460 12.39% 548
NW_021161680.1 4380 8.46% 375
NW_021161686.1 22410 16.56% 1944
NW_021161694.1 2510 5.52% 216
NW_021161695.1 4490 8.40% 379
NW_021161696.1 3150 5.94% 271
NW_021161699.1 13334 27.58% 1147
NW_021161700.1 680 1.28% 55
NW_021161713.1 1780 3.30% 156
NW_021161715.1 870 1.60% 76
NW_021161718.1 14070 25.82% 1193
NW_021161725.1 6530 20.75% 547
NW_021161737.1 5660 10.13% 473
NW_021161743.1 3000 5.36% 258
NW_021161747.1 780 1.38% 71
NW_021161754.1 18950 33.13% 1601
NW_021161759.1 1070 1.86% 95
NW_021161767.1 12400 12.14% 1053
NW_021161769.1 4820 8.31% 422
NW_021161772.1 5700 7.71% 481
NW_021161784.1 1330 25.84% 110
NW_021161790.1 20460 33.90% 1735
NW_021161794.1 2020 3.34% 181
NW_021161796.1 2810 4.65% 251
NW_021161798.1 5420 11.51% 470
NW_021161830.1 8230 18.39% 684
NW_021161832.1 3350 5.28% 285
NW_021161839.1 2630 4.11% 226
NW_021161842.1 7140 10.95% 594
NW_021161843.1 4850 7.45% 420
NW_021161845.1 19930 30.48% 1694
NW_021161850.1 399171 35.73% 33751
NW_021161853.1 10830 16.41% 911
NW_021161857.1 8920 13.44% 754
NW_021161862.1 4330 6.54% 370
NW_021161876.1 16460 24.11% 1335
NW_021161878.1 12540 18.44% 1078
NW_021161881.1 13640 22.65% 1140
NW_021161888.1 13640 19.65% 1180
NW_021161902.1 14320 22.10% 1186
NW_021161927.1 6760 9.04% 569
NW_021161934.1 10260 13.62% 847
NW_021161939.1 18600 24.56% 1579
NW_021161954.1 9160 11.88% 783
NW_021161955.1 6750 8.71% 553
NW_021161956.1 14880 19.48% 1257
NW_021161958.1 23070 29.38% 1853
NW_021161961.1 12480 15.96% 1059
NW_021161962.1 3050 3.82% 250
NW_021161965.1 8370 10.59% 719
NW_021161996.1 6030 7.02% 511
NW_021162004.1 1410 4.97% 120
NW_021162007.1 6550 7.45% 557
NW_021162009.1 34470 39.54% 2952
NW_021162025.1 9660 10.83% 831
NW_021162035.1 4420 4.74% 387
NW_021162047.1 8590 8.98% 732
NW_021162055.1 19380 19.48% 1619
NW_021162083.1 20860 12.11% 1760
NW_021162091.1 20490 18.07% 1748
NW_021162100.1 17570 13.98% 1548
NW_021162108.1 14510 45.52% 1183
NW_021162157.1 3810 6.32% 335
NW_021162185.1 40 0.45% 4
NW_021162208.1 1660 0.67% 156
NW_021162222.1 4470 11.81% 400
NW_021162226.1 2360 5.41% 217
NW_021162246.1 47800 45.25% 3942
NW_021162251.1 28460 39.85% 2322
NW_021162253.1 310 0.99% 30
NW_021162263.1 550 2.08% 49
NW_021162265.1 13130 33.97% 1118
NW_021162274.1 41200 40.57% 3455
NW_021162277.1 3470 13.95% 289
NW_021162460.1 60 0.80% 5
NW_021162463.1 850 11.26% 66
NW_021162495.1 350 5.31% 31
NW_021162553.1 800 9.24% 65
NW_021162593.1 400 4.30% 33
NW_021162599.1 5710 60.91% 499
NW_021162621.1 750 7.68% 62
NW_021162643.1 11540 45.41% 956
NW_021162814.1 680 5.48% 58
NW_021162871.1 1270 9.15% 109
NW_021162949.1 20 0.13% 2
NW_021163002.1 150 0.95% 13
2534 contigs with no values (90140842 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 131546492 1 150 11.97 10
global segment-length histogram

Files

Filename Size md5
GPe_SOX6-CTXND1_GABA.bw 783.9 MB 3a120d5ba6044b6ca06aeb2ace9a77a5
genomic_resource.yaml 1.14 KB c8ab16667cb36fb8a5e9ad4041a5a12c
statistics/