Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/GPi_Core/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for GPi_Core cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: GPi_Core
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_GPi_Core float

johansen2025Crossspecies_atac_macaque_GPi_Core

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_GPi_Core [0.053, 109]
n
1,528,344,433
mean
0.176
sd
0.313

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 152834443351.44% 127769175
NC_005943.1 1810 10.93% 169
NC_027914.1 1612960 13.72% 137161
NC_041754.1 128913570 57.65% 10827453
NC_041755.1 104247190 53.13% 8682697
NC_041756.1 101813390 54.95% 8516078
NC_041757.1 89106400 52.43% 7417949
NC_041758.1 91207090 48.69% 7565558
NC_041759.1 93080550 51.98% 7756513
NC_041760.1 96257720 56.67% 8071105
NC_041761.1 76736920 52.68% 6397127
NC_041762.1 74435050 55.50% 6233193
NC_041763.1 58878680 59.16% 4950377
NC_041764.1 72848510 54.75% 6087028
NC_041765.1 68628636 52.77% 5710956
NC_041766.1 60269200 55.43% 5044060
NC_041767.1 72394930 56.53% 6090093
NC_041768.1 62632790 55.29% 5250389
NC_041769.1 48789240 61.27% 4130101
NC_041770.1 47193990 49.45% 3925126
NC_041771.1 39070000 52.46% 3252158
NC_041772.1 33540120 57.52% 2842034
NC_041773.1 46836915 60.72% 3951103
NC_041774.1 55757200 36.35% 4582833
NW_021160097.1 480 1.30% 43
NW_021160098.1 2030 5.08% 184
NW_021160099.1 1310 3.24% 118
NW_021160102.1 5600 11.16% 467
NW_021160105.1 3330 6.07% 284
NW_021160106.1 7450 13.41% 654
NW_021160107.1 3940 7.09% 338
NW_021160109.1 8670 10.53% 724
NW_021160110.1 20870 17.67% 1736
NW_021160111.1 32385 24.35% 2669
NW_021160113.1 53050 45.60% 4633
NW_021160114.1 11840 17.96% 1013
NW_021160116.1 1690 4.78% 151
NW_021160121.1 3370 3.91% 293
NW_021160122.1 6850 7.44% 607
NW_021160123.1 5660 10.69% 474
NW_021160125.1 400 1.58% 37
NW_021160136.1 5670 9.49% 480
NW_021160140.1 11830 9.08% 1025
NW_021160141.1 13080 9.75% 1105
NW_021160142.1 21890 45.78% 1844
NW_021160144.1 238439 19.39% 20390
NW_021160145.1 2320 8.63% 201
NW_021160147.1 3050 10.15% 242
NW_021160148.1 6840 19.93% 584
NW_021160150.1 2960 7.89% 268
NW_021160155.1 4590 8.42% 400
NW_021160158.1 6250 8.29% 528
NW_021160159.1 17790 20.74% 1470
NW_021160161.1 142882 19.35% 11884
NW_021160167.1 540 1.43% 47
NW_021160168.1 1190 2.86% 97
NW_021160175.1 71420 38.58% 5837
NW_021160179.1 3500 9.00% 306
NW_021160182.1 8140 14.01% 700
NW_021160184.1 3920 6.39% 342
NW_021160185.1 2420 3.90% 217
NW_021160186.1 10320 16.00% 862
NW_021160187.1 2900 3.80% 253
NW_021160188.1 9370 11.30% 779
NW_021160189.1 8780 8.66% 759
NW_021160190.1 7690 21.52% 671
NW_021160191.1 1910 6.86% 160
NW_021160193.1 620 1.99% 56
NW_021160196.1 12200 26.46% 1001
NW_021160197.1 4920 9.50% 419
NW_021160199.1 5430 9.71% 463
NW_021160200.1 3500 5.93% 301
NW_021160201.1 11570 18.83% 966
NW_021160202.1 4230 6.46% 358
NW_021160203.1 8610 11.92% 707
NW_021160204.1 8930 12.26% 760
NW_021160205.1 6280 8.57% 539
NW_021160206.1 6800 8.12% 572
NW_021160207.1 7340 7.43% 633
NW_021160209.1 42350 6.32% 3584
NW_021160211.1 14870 11.15% 1296
NW_021160220.1 13300 19.93% 1131
NW_021160221.1 7760 10.95% 667
NW_021160222.1 3540 4.63% 322
NW_021160223.1 17460 20.96% 1454
NW_021160225.1 10190 18.93% 814
NW_021160226.1 4100 11.38% 350
NW_021160228.1 2590 5.41% 228
NW_021160229.1 7320 15.26% 626
NW_021160231.1 6550 12.02% 546
NW_021160233.1 5310 8.21% 435
NW_021160234.1 19100 29.14% 1680
NW_021160236.1 8750 11.25% 723
NW_021160237.1 28500 33.25% 2441
NW_021160238.1 20430 19.56% 1745
NW_021160239.1 3600 12.34% 301
NW_021160242.1 1950 6.60% 162
NW_021160243.1 1080 3.43% 100
NW_021160244.1 20840 59.17% 1856
NW_021160245.1 1860 4.25% 156
NW_021160248.1 2410 3.22% 215
NW_021160249.1 7230 9.55% 611
NW_021160250.1 3840 5.97% 317
NW_021160251.1 9580 11.35% 802
NW_021160252.1 14770 16.66% 1233
NW_021160255.1 2970 10.58% 253
NW_021160263.1 3990 7.58% 341
NW_021160266.1 2290 3.05% 212
NW_021160268.1 3660 5.40% 324
NW_021160270.1 4420 12.69% 386
NW_021160271.1 1920 5.52% 161
NW_021160272.1 4930 14.09% 418
NW_021160273.1 3580 8.91% 299
NW_021160277.1 980 2.18% 92
NW_021160278.1 8460 15.21% 694
NW_021160279.1 7700 11.67% 658
NW_021160282.1 17680 14.29% 1495
NW_021160284.1 1500 4.31% 133
NW_021160285.1 3560 7.98% 303
NW_021160291.1 1160 2.56% 105
NW_021160293.1 8180 15.48% 681
NW_021160294.1 10710 13.45% 922
NW_021160295.1 9940 12.04% 854
NW_021160297.1 6870 12.22% 578
NW_021160298.1 4020 14.76% 334
NW_021160300.1 9970 16.01% 821
NW_021160305.1 1710 4.24% 164
NW_021160306.1 3160 8.01% 284
NW_021160307.1 6750 12.81% 583
NW_021160308.1 6490 12.04% 529
NW_021160310.1 23890 41.00% 2138
NW_021160311.1 15320 19.45% 1299
NW_021160312.1 13470 15.23% 1143
NW_021160313.1 14400 15.22% 1205
NW_021160319.1 7020 16.16% 581
NW_021160320.1 5920 11.27% 490
NW_021160324.1 10910 17.15% 904
NW_021160325.1 10600 16.27% 911
NW_021160326.1 5180 7.95% 435
NW_021160327.1 7840 11.88% 664
NW_021160328.1 13230 20.89% 1132
NW_021160329.1 9090 16.93% 776
NW_021160338.1 1820 4.85% 162
NW_021160339.1 1150 2.98% 104
NW_021160341.1 6650 14.36% 558
NW_021160347.1 19940 12.07% 1682
NW_021160353.1 6420 15.59% 546
NW_021160354.1 2580 6.15% 210
NW_021160355.1 5540 9.97% 464
NW_021160356.1 5520 7.23% 469
NW_021160357.1 1700 5.58% 152
NW_021160358.1 5470 13.86% 471
NW_021160359.1 6260 15.25% 531
NW_021160361.1 2010 4.27% 177
NW_021160362.1 2960 5.52% 249
NW_021160363.1 7910 12.98% 681
NW_021160364.1 8450 13.67% 721
NW_021160365.1 8030 12.09% 667
NW_021160366.1 9340 13.11% 796
NW_021160367.1 16070 21.04% 1347
NW_021160368.1 3090 3.91% 275
NW_021160369.1 6080 7.43% 526
NW_021160370.1 11860 13.25% 980
NW_021160371.1 5790 6.40% 492
NW_021160372.1 26060 19.38% 2179
NW_021160373.1 12140 20.88% 1001
NW_021160374.1 17360 13.96% 1442
NW_021160375.1 38850 21.13% 3180
NW_021160376.1 179850 20.84% 14955
NW_021160381.1 630 1.29% 60
NW_021160383.1 26727 38.74% 2289
NW_021160384.1 2760 3.47% 242
NW_021160401.1 1430 8.79% 131
NW_021160410.1 7320 44.48% 646
NW_021160417.1 3980 7.03% 313
NW_021160452.1 2670 15.77% 222
NW_021160482.1 730 4.23% 64
NW_021160484.1 3980 22.88% 310
NW_021160495.1 160380 19.47% 13621
NW_021160514.1 1600 8.88% 128
NW_021160523.1 590 3.26% 49
NW_021160525.1 3140 17.31% 273
NW_021160535.1 4460 24.34% 378
NW_021160549.1 2200 11.85% 184
NW_021160573.1 6760 35.51% 604
NW_021160589.1 90 0.47% 9
NW_021160606.1 105370 10.48% 8779
NW_021160623.1 540 2.73% 42
NW_021160625.1 180 0.91% 17
NW_021160629.1 440 2.21% 37
NW_021160635.1 720 3.58% 62
NW_021160655.1 4350 21.14% 362
NW_021160656.1 2080 10.17% 170
NW_021160678.1 690 3.32% 58
NW_021160682.1 11395 54.98% 949
NW_021160688.1 3240 15.87% 275
NW_021160701.1 7750 36.53% 709
NW_021160725.1 460 2.12% 42
NW_021160726.1 14680 67.50% 1401
NW_021160734.1 920 4.23% 75
NW_021160757.1 110 0.50% 11
NW_021160770.1 14140 62.48% 1351
NW_021160772.1 1880 8.29% 161
NW_021160805.1 7090 30.24% 588
NW_021160821.1 720 3.01% 63
NW_021160827.1 68050 9.27% 5990
NW_021160832.1 640 2.66% 59
NW_021160834.1 2180 9.04% 187
NW_021160835.1 40 0.24% 4
NW_021160848.1 340 1.40% 28
NW_021160868.1 60 0.25% 6
NW_021160890.1 2390 9.47% 204
NW_021160903.1 5520 20.84% 449
NW_021160919.1 1410 5.41% 125
NW_021160925.1 570 2.19% 51
NW_021160946.1 2540 9.59% 234
NW_021160955.1 3290 12.39% 269
NW_021160961.1 1920 7.17% 173
NW_021160976.1 6170 22.67% 517
NW_021160983.1 170 0.62% 15
NW_021160986.1 40 0.15% 4
NW_021161026.1 190 0.68% 17
NW_021161033.1 80 0.28% 8
NW_021161038.1 1380 5.10% 118
NW_021161041.1 2390 8.38% 194
NW_021161043.1 550 1.89% 53
NW_021161046.1 4200 14.23% 370
NW_021161062.1 480 1.62% 38
NW_021161066.1 9500 31.84% 804
NW_021161106.1 5610 18.30% 476
NW_021161107.1 2300 7.48% 195
NW_021161113.1 7390 21.91% 602
NW_021161114.1 6450 20.91% 574
NW_021161131.1 170 0.54% 16
NW_021161133.1 8450 5.69% 723
NW_021161138.1 530 1.70% 47
NW_021161152.1 2400 7.63% 196
NW_021161164.1 4410 13.64% 379
NW_021161166.1 7500 23.08% 647
NW_021161184.1 2000 6.77% 173
NW_021161201.1 2450 7.38% 207
NW_021161211.1 3650 10.94% 313
NW_021161213.1 600 1.80% 54
NW_021161224.1 5800 17.21% 483
NW_021161226.1 5470 16.41% 478
NW_021161241.1 750 2.19% 67
NW_021161247.1 40 0.12% 4
NW_021161253.1 340 0.98% 30
NW_021161261.1 920 2.63% 86
NW_021161269.1 9150 26.07% 728
NW_021161274.1 100 0.29% 10
NW_021161282.1 17740 45.63% 1587
NW_021161303.1 1530 4.25% 135
NW_021161305.1 560 1.55% 51
NW_021161307.1 1030 3.88% 92
NW_021161312.1 510 1.43% 48
NW_021161320.1 13500 13.74% 1136
NW_021161336.1 4830 13.10% 404
NW_021161338.1 1730 4.65% 141
NW_021161340.1 2210 6.01% 192
NW_021161348.1 5030 13.43% 420
NW_021161355.1 6280 16.25% 538
NW_021161360.1 770 2.06% 72
NW_021161364.1 3100 8.12% 268
NW_021161377.1 16260 40.90% 1387
NW_021161379.1 310 0.81% 27
NW_021161380.1 110 0.35% 11
NW_021161385.1 1220 3.14% 106
NW_021161392.1 8720 22.29% 779
NW_021161394.1 4200 10.82% 352
NW_021161396.1 400 1.02% 34
NW_021161399.1 2610 11.91% 228
NW_021161404.1 820 2.08% 76
NW_021161413.1 1760 4.44% 156
NW_021161421.1 1020 2.56% 85
NW_021161422.1 530 1.34% 43
NW_021161427.1 2470 6.16% 202
NW_021161433.1 610 1.51% 56
NW_021161437.1 1330 4.43% 118
NW_021161446.1 1130 2.76% 101
NW_021161463.1 100 0.24% 10
NW_021161468.1 3190 7.60% 278
NW_021161470.1 440 1.05% 42
NW_021161483.1 60 0.14% 6
NW_021161486.1 6400 15.04% 557
NW_021161494.1 1590 3.71% 133
NW_021161497.1 900 2.10% 79
NW_021161505.1 6190 14.36% 504
NW_021161507.1 7190 16.61% 597
NW_021161508.1 14194 32.89% 1156
NW_021161519.1 7790 17.76% 625
NW_021161520.1 2970 6.89% 275
NW_021161523.1 3350 7.74% 280
NW_021161525.1 11150 25.33% 925
NW_021161526.1 6930 15.73% 609
NW_021161532.1 1380 3.10% 116
NW_021161535.1 1420 3.18% 131
NW_021161537.1 15210 34.29% 1382
NW_021161545.1 16460 36.84% 1529
NW_021161552.1 1220 2.87% 112
NW_021161554.1 5990 13.27% 507
NW_021161561.1 8100 17.93% 681
NW_021161562.1 11820 26.00% 1008
NW_021161567.1 3340 7.34% 288
NW_021161570.1 140 0.31% 14
NW_021161582.1 13240 28.82% 1130
NW_021161585.1 12200 26.47% 1053
NW_021161590.1 22540 48.99% 1950
NW_021161593.1 20220 43.45% 1726
NW_021161596.1 81210 15.06% 7012
NW_021161601.1 8480 18.03% 725
NW_021161608.1 2770 5.93% 232
NW_021161609.1 1150 2.44% 87
NW_021161614.1 2330 4.88% 206
NW_021161616.1 6470 13.52% 553
NW_021161617.1 350 0.73% 31
NW_021161627.1 5170 15.46% 416
NW_021161633.1 18010 36.45% 1433
NW_021161642.1 5160 10.37% 434
NW_021161648.1 20470 40.23% 1785
NW_021161679.1 6230 11.95% 509
NW_021161680.1 4320 8.35% 360
NW_021161686.1 24480 18.09% 2108
NW_021161694.1 2530 5.56% 219
NW_021161695.1 3490 6.53% 306
NW_021161696.1 3900 7.35% 337
NW_021161699.1 14354 29.69% 1227
NW_021161700.1 780 1.47% 72
NW_021161713.1 800 1.48% 70
NW_021161715.1 970 1.78% 87
NW_021161718.1 13250 24.32% 1076
NW_021161725.1 4760 15.13% 404
NW_021161737.1 4430 7.93% 379
NW_021161743.1 3860 6.89% 330
NW_021161747.1 710 1.26% 63
NW_021161754.1 19330 33.80% 1616
NW_021161759.1 1230 2.14% 110
NW_021161767.1 10640 10.42% 904
NW_021161769.1 5040 8.69% 441
NW_021161772.1 4170 5.64% 359
NW_021161784.1 1190 23.12% 97
NW_021161790.1 17370 28.78% 1488
NW_021161794.1 1500 2.48% 126
NW_021161796.1 2210 3.66% 194
NW_021161798.1 6100 12.96% 524
NW_021161830.1 10080 22.53% 819
NW_021161832.1 3740 5.90% 320
NW_021161839.1 2740 4.28% 245
NW_021161842.1 8630 13.23% 723
NW_021161843.1 6600 10.13% 566
NW_021161845.1 18270 27.94% 1533
NW_021161850.1 476641 42.66% 40952
NW_021161853.1 10250 15.53% 847
NW_021161857.1 7560 11.39% 637
NW_021161862.1 2140 3.23% 190
NW_021161876.1 17520 25.66% 1435
NW_021161878.1 13690 20.13% 1163
NW_021161881.1 10850 18.01% 926
NW_021161888.1 13210 19.03% 1142
NW_021161902.1 14550 22.45% 1228
NW_021161927.1 5250 7.02% 447
NW_021161934.1 9580 12.72% 783
NW_021161939.1 17680 23.34% 1537
NW_021161954.1 9430 12.23% 812
NW_021161955.1 5740 7.41% 485
NW_021161956.1 13150 17.22% 1104
NW_021161958.1 20970 26.70% 1730
NW_021161961.1 10600 13.55% 903
NW_021161962.1 2960 3.70% 249
NW_021161965.1 8080 10.22% 689
NW_021161996.1 4330 5.04% 372
NW_021162004.1 1610 5.67% 133
NW_021162007.1 5480 6.24% 458
NW_021162009.1 32580 37.37% 2809
NW_021162025.1 10580 11.87% 926
NW_021162035.1 2840 3.04% 253
NW_021162047.1 7620 7.96% 647
NW_021162055.1 19020 19.12% 1626
NW_021162083.1 19580 11.36% 1647
NW_021162091.1 21740 19.17% 1882
NW_021162100.1 17670 14.06% 1590
NW_021162108.1 14400 45.18% 1203
NW_021162157.1 3620 6.01% 320
NW_021162185.1 20 0.23% 2
NW_021162208.1 2030 0.82% 182
NW_021162222.1 3110 8.22% 269
NW_021162226.1 2100 4.81% 183
NW_021162246.1 45820 43.37% 3723
NW_021162251.1 28600 40.05% 2349
NW_021162253.1 310 0.99% 29
NW_021162263.1 340 1.28% 29
NW_021162265.1 13420 34.72% 1120
NW_021162274.1 43870 43.20% 3753
NW_021162277.1 3600 14.47% 307
NW_021162463.1 950 12.58% 85
NW_021162495.1 430 6.53% 39
NW_021162553.1 540 6.23% 44
NW_021162593.1 330 3.55% 25
NW_021162599.1 5675 60.53% 491
NW_021162621.1 1230 12.59% 103
NW_021162643.1 11120 43.75% 946
NW_021162814.1 850 6.86% 69
NW_021162871.1 1370 9.87% 110
NW_021162949.1 20 0.13% 2
NW_021163002.1 120 0.76% 10
2535 contigs with no values (90148363 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 127769175 1 140 11.96 10
global segment-length histogram

Files

Filename Size md5
GPi_Core.bw 771.01 MB 6b0f4cb7682198fd371b539b50a2f1db
genomic_resource.yaml 1.09 KB 327537873c591c284e3e7a7fcbd9bf3a
statistics/