Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/GPi_Shell/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for GPi_Shell cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: GPi_Shell
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_GPi_Shell float

johansen2025Crossspecies_atac_macaque_GPi_Shell

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_GPi_Shell [0.263, 84.7]
n
665,439,503
mean
0.453
sd
0.471

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 66543950322.40% 55283738
NC_005943.1 1400 8.45% 126
NC_027914.1 468170 3.98% 42848
NC_041754.1 58214400 26.03% 4813036
NC_041755.1 44807820 22.84% 3730160
NC_041756.1 43941520 23.72% 3649928
NC_041757.1 37094320 21.82% 3096953
NC_041758.1 35671460 19.04% 3002613
NC_041759.1 38993780 21.77% 3254915
NC_041760.1 43528100 25.62% 3602095
NC_041761.1 32815090 22.53% 2733873
NC_041762.1 33874850 25.26% 2801627
NC_041763.1 28662450 28.80% 2346004
NC_041764.1 31705570 23.83% 2631861
NC_041765.1 29125300 22.40% 2428430
NC_041766.1 26879030 24.72% 2227726
NC_041767.1 33354300 26.05% 2759328
NC_041768.1 28115550 24.82% 2328768
NC_041769.1 24137520 30.31% 1976902
NC_041770.1 18719660 19.62% 1568184
NC_041771.1 16521900 22.18% 1377878
NC_041772.1 16087870 27.59% 1318942
NC_041773.1 22616780 29.32% 1858004
NC_041774.1 18692240 12.19% 1611908
NW_021160097.1 130 0.35% 13
NW_021160098.1 910 2.28% 80
NW_021160099.1 330 0.82% 30
NW_021160102.1 1670 3.33% 148
NW_021160105.1 820 1.49% 79
NW_021160106.1 2410 4.34% 221
NW_021160107.1 1220 2.19% 116
NW_021160109.1 3220 3.91% 277
NW_021160110.1 8620 7.30% 734
NW_021160111.1 8590 6.46% 771
NW_021160113.1 29990 25.78% 2485
NW_021160114.1 4510 6.84% 392
NW_021160116.1 280 0.79% 28
NW_021160121.1 1310 1.52% 119
NW_021160122.1 1760 1.91% 162
NW_021160123.1 2190 4.14% 186
NW_021160125.1 80 0.32% 8
NW_021160136.1 2000 3.35% 170
NW_021160140.1 3530 2.71% 318
NW_021160141.1 4960 3.70% 449
NW_021160142.1 11080 23.17% 928
NW_021160144.1 46430 3.78% 4277
NW_021160145.1 470 1.75% 44
NW_021160147.1 1080 3.60% 97
NW_021160148.1 3120 9.09% 256
NW_021160150.1 1500 4.00% 132
NW_021160155.1 1950 3.58% 166
NW_021160158.1 1690 2.24% 147
NW_021160159.1 4410 5.14% 400
NW_021160161.1 43472 5.89% 3742
NW_021160167.1 180 0.48% 18
NW_021160168.1 280 0.67% 22
NW_021160175.1 25590 13.82% 2201
NW_021160179.1 650 1.67% 64
NW_021160182.1 3870 6.66% 320
NW_021160184.1 1020 1.66% 95
NW_021160185.1 1140 1.83% 104
NW_021160186.1 3640 5.64% 321
NW_021160187.1 830 1.09% 76
NW_021160188.1 2840 3.42% 249
NW_021160189.1 2810 2.77% 259
NW_021160190.1 4120 11.53% 333
NW_021160191.1 770 2.76% 71
NW_021160193.1 150 0.48% 15
NW_021160196.1 5290 11.47% 447
NW_021160197.1 1800 3.47% 167
NW_021160199.1 1400 2.50% 134
NW_021160200.1 740 1.25% 69
NW_021160201.1 3840 6.25% 323
NW_021160202.1 1140 1.74% 102
NW_021160203.1 2570 3.56% 237
NW_021160204.1 2910 4.00% 265
NW_021160205.1 1660 2.27% 152
NW_021160206.1 2310 2.76% 204
NW_021160207.1 2290 2.32% 208
NW_021160209.1 11030 1.65% 962
NW_021160211.1 4210 3.16% 362
NW_021160220.1 5750 8.62% 476
NW_021160221.1 3180 4.49% 277
NW_021160222.1 660 0.86% 62
NW_021160223.1 8200 9.84% 687
NW_021160225.1 2540 4.72% 225
NW_021160226.1 1160 3.22% 105
NW_021160228.1 920 1.92% 84
NW_021160229.1 2030 4.23% 178
NW_021160231.1 1900 3.49% 162
NW_021160233.1 2200 3.40% 191
NW_021160234.1 10630 16.22% 893
NW_021160236.1 2180 2.80% 200
NW_021160237.1 10760 12.55% 918
NW_021160238.1 7920 7.58% 680
NW_021160239.1 910 3.12% 80
NW_021160242.1 650 2.20% 58
NW_021160243.1 240 0.76% 20
NW_021160244.1 12870 36.54% 1094
NW_021160245.1 710 1.62% 66
NW_021160248.1 740 0.99% 71
NW_021160249.1 2520 3.33% 225
NW_021160250.1 890 1.38% 77
NW_021160251.1 2830 3.35% 254
NW_021160252.1 5370 6.06% 451
NW_021160255.1 1340 4.77% 106
NW_021160263.1 820 1.56% 75
NW_021160266.1 790 1.05% 75
NW_021160268.1 1970 2.91% 181
NW_021160270.1 2220 6.37% 188
NW_021160271.1 880 2.53% 78
NW_021160272.1 2920 8.34% 237
NW_021160273.1 970 2.41% 91
NW_021160277.1 330 0.74% 32
NW_021160278.1 1920 3.45% 168
NW_021160279.1 2650 4.02% 230
NW_021160282.1 6220 5.03% 545
NW_021160284.1 790 2.27% 68
NW_021160285.1 1070 2.40% 99
NW_021160291.1 280 0.62% 27
NW_021160293.1 2880 5.45% 244
NW_021160294.1 3920 4.92% 327
NW_021160295.1 1780 2.16% 165
NW_021160297.1 2450 4.36% 210
NW_021160298.1 1600 5.87% 144
NW_021160300.1 3780 6.07% 327
NW_021160305.1 430 1.07% 38
NW_021160306.1 1280 3.24% 117
NW_021160307.1 2370 4.50% 211
NW_021160308.1 2040 3.78% 184
NW_021160310.1 14830 25.45% 1237
NW_021160311.1 5080 6.45% 454
NW_021160312.1 5370 6.07% 475
NW_021160313.1 4490 4.74% 393
NW_021160319.1 2590 5.96% 222
NW_021160320.1 1790 3.41% 164
NW_021160324.1 4490 7.06% 395
NW_021160325.1 3410 5.23% 304
NW_021160326.1 1750 2.69% 159
NW_021160327.1 3000 4.55% 260
NW_021160328.1 6570 10.38% 559
NW_021160329.1 3690 6.87% 314
NW_021160338.1 560 1.49% 54
NW_021160339.1 230 0.60% 19
NW_021160341.1 1780 3.84% 159
NW_021160347.1 6700 4.05% 606
NW_021160353.1 2300 5.59% 197
NW_021160354.1 940 2.24% 80
NW_021160355.1 1710 3.08% 155
NW_021160356.1 1870 2.45% 169
NW_021160357.1 250 0.82% 23
NW_021160358.1 1700 4.31% 153
NW_021160359.1 2390 5.82% 203
NW_021160361.1 710 1.51% 66
NW_021160362.1 780 1.45% 75
NW_021160363.1 1950 3.20% 174
NW_021160364.1 2650 4.29% 219
NW_021160365.1 3310 4.98% 290
NW_021160366.1 2730 3.83% 248
NW_021160367.1 6410 8.39% 534
NW_021160368.1 870 1.10% 80
NW_021160369.1 1680 2.05% 157
NW_021160370.1 3840 4.29% 322
NW_021160371.1 1450 1.60% 138
NW_021160372.1 8760 6.52% 764
NW_021160373.1 4650 8.00% 389
NW_021160374.1 4700 3.78% 414
NW_021160375.1 12250 6.66% 1056
NW_021160376.1 70800 8.21% 6022
NW_021160381.1 320 0.66% 29
NW_021160383.1 11690 16.94% 943
NW_021160384.1 990 1.24% 96
NW_021160401.1 270 1.66% 27
NW_021160410.1 4400 26.74% 360
NW_021160417.1 860 1.52% 72
NW_021160452.1 990 5.85% 85
NW_021160482.1 180 1.04% 14
NW_021160484.1 900 5.17% 84
NW_021160495.1 37320 4.53% 3259
NW_021160514.1 590 3.27% 53
NW_021160523.1 300 1.66% 25
NW_021160525.1 1230 6.78% 106
NW_021160535.1 1060 5.78% 95
NW_021160549.1 1130 6.09% 102
NW_021160573.1 2990 15.71% 253
NW_021160589.1 60 0.31% 6
NW_021160606.1 22300 2.22% 2000
NW_021160623.1 160 0.81% 14
NW_021160625.1 80 0.40% 8
NW_021160629.1 370 1.86% 34
NW_021160635.1 110 0.55% 10
NW_021160655.1 1080 5.25% 101
NW_021160656.1 510 2.49% 48
NW_021160678.1 100 0.48% 10
NW_021160682.1 5480 26.44% 447
NW_021160688.1 1520 7.44% 140
NW_021160701.1 4240 19.98% 374
NW_021160725.1 190 0.88% 19
NW_021160726.1 11210 51.54% 1018
NW_021160734.1 210 0.96% 21
NW_021160757.1 100 0.45% 10
NW_021160770.1 11160 49.31% 1006
NW_021160772.1 550 2.43% 54
NW_021160805.1 3780 16.12% 311
NW_021160821.1 100 0.42% 9
NW_021160827.1 29270 3.99% 2481
NW_021160832.1 250 1.04% 24
NW_021160834.1 550 2.28% 52
NW_021160835.1 20 0.12% 2
NW_021160848.1 20 0.08% 2
NW_021160868.1 20 0.08% 2
NW_021160890.1 820 3.25% 76
NW_021160903.1 1840 6.95% 151
NW_021160919.1 440 1.69% 37
NW_021160925.1 80 0.31% 8
NW_021160946.1 980 3.70% 87
NW_021160955.1 920 3.47% 84
NW_021160961.1 560 2.09% 55
NW_021160976.1 2100 7.72% 181
NW_021160983.1 20 0.07% 2
NW_021161026.1 40 0.14% 4
NW_021161033.1 20 0.07% 2
NW_021161038.1 540 2.00% 49
NW_021161041.1 650 2.28% 56
NW_021161043.1 220 0.75% 20
NW_021161046.1 2130 7.22% 189
NW_021161062.1 100 0.34% 10
NW_021161066.1 3800 12.74% 321
NW_021161106.1 1640 5.35% 143
NW_021161107.1 570 1.85% 54
NW_021161113.1 2310 6.85% 203
NW_021161114.1 3500 11.35% 305
NW_021161131.1 40 0.13% 4
NW_021161133.1 1430 0.96% 133
NW_021161138.1 160 0.51% 15
NW_021161152.1 950 3.02% 88
NW_021161164.1 1620 5.01% 139
NW_021161166.1 1880 5.78% 158
NW_021161184.1 360 1.22% 32
NW_021161201.1 1050 3.16% 97
NW_021161211.1 930 2.79% 89
NW_021161213.1 80 0.24% 8
NW_021161224.1 2800 8.31% 219
NW_021161226.1 2260 6.78% 189
NW_021161241.1 160 0.47% 15
NW_021161253.1 20 0.06% 2
NW_021161261.1 320 0.92% 31
NW_021161269.1 3140 8.95% 271
NW_021161274.1 20 0.06% 2
NW_021161282.1 10520 27.06% 867
NW_021161303.1 380 1.06% 36
NW_021161305.1 210 0.58% 19
NW_021161307.1 590 2.22% 55
NW_021161312.1 110 0.31% 9
NW_021161320.1 3390 3.45% 295
NW_021161336.1 1530 4.15% 136
NW_021161338.1 530 1.43% 46
NW_021161340.1 620 1.69% 58
NW_021161348.1 1760 4.70% 149
NW_021161355.1 2130 5.51% 187
NW_021161360.1 350 0.93% 30
NW_021161364.1 1110 2.91% 96
NW_021161377.1 6990 17.58% 589
NW_021161379.1 60 0.16% 6
NW_021161380.1 40 0.13% 4
NW_021161385.1 200 0.51% 16
NW_021161392.1 4240 10.84% 381
NW_021161394.1 1930 4.97% 159
NW_021161396.1 180 0.46% 18
NW_021161399.1 1100 5.02% 86
NW_021161404.1 190 0.48% 17
NW_021161413.1 400 1.01% 40
NW_021161421.1 240 0.60% 23
NW_021161422.1 360 0.91% 32
NW_021161427.1 760 1.90% 71
NW_021161433.1 230 0.57% 21
NW_021161437.1 390 1.30% 39
NW_021161446.1 630 1.54% 57
NW_021161468.1 670 1.60% 60
NW_021161470.1 150 0.36% 15
NW_021161483.1 20 0.05% 2
NW_021161486.1 2220 5.22% 174
NW_021161494.1 240 0.56% 22
NW_021161497.1 280 0.65% 27
NW_021161505.1 2280 5.29% 182
NW_021161507.1 1930 4.46% 178
NW_021161508.1 6340 14.69% 523
NW_021161519.1 1630 3.72% 148
NW_021161520.1 1990 4.62% 178
NW_021161523.1 880 2.03% 81
NW_021161525.1 4550 10.33% 373
NW_021161526.1 3160 7.17% 274
NW_021161532.1 240 0.54% 22
NW_021161535.1 180 0.40% 17
NW_021161537.1 7760 17.50% 655
NW_021161545.1 9940 22.25% 850
NW_021161552.1 320 0.75% 27
NW_021161554.1 1500 3.32% 134
NW_021161561.1 3420 7.57% 291
NW_021161562.1 4350 9.57% 354
NW_021161567.1 890 1.95% 77
NW_021161570.1 50 0.11% 5
NW_021161582.1 5850 12.73% 488
NW_021161585.1 6080 13.19% 496
NW_021161590.1 7810 16.97% 650
NW_021161593.1 8010 17.21% 669
NW_021161596.1 25420 4.71% 2172
NW_021161601.1 1940 4.12% 174
NW_021161608.1 940 2.01% 79
NW_021161609.1 200 0.43% 20
NW_021161614.1 760 1.59% 66
NW_021161616.1 3000 6.27% 272
NW_021161617.1 120 0.25% 12
NW_021161627.1 2060 6.16% 168
NW_021161633.1 7180 14.53% 609
NW_021161642.1 1160 2.33% 111
NW_021161648.1 11380 22.37% 961
NW_021161679.1 2540 4.87% 210
NW_021161680.1 910 1.76% 78
NW_021161686.1 8870 6.56% 765
NW_021161694.1 650 1.43% 57
NW_021161695.1 1040 1.95% 99
NW_021161696.1 970 1.83% 81
NW_021161699.1 4360 9.02% 359
NW_021161700.1 140 0.26% 13
NW_021161713.1 270 0.50% 27
NW_021161715.1 160 0.29% 16
NW_021161718.1 5180 9.51% 433
NW_021161725.1 1970 6.26% 174
NW_021161737.1 1670 2.99% 157
NW_021161743.1 1040 1.86% 94
NW_021161747.1 180 0.32% 17
NW_021161754.1 8540 14.93% 717
NW_021161759.1 310 0.54% 29
NW_021161767.1 3710 3.63% 329
NW_021161769.1 1190 2.05% 110
NW_021161772.1 1210 1.64% 107
NW_021161784.1 530 10.30% 49
NW_021161790.1 8450 14.00% 699
NW_021161794.1 300 0.50% 28
NW_021161796.1 410 0.68% 40
NW_021161798.1 1510 3.21% 122
NW_021161830.1 3260 7.28% 283
NW_021161832.1 1010 1.59% 89
NW_021161839.1 880 1.37% 82
NW_021161842.1 2000 3.07% 185
NW_021161843.1 1500 2.30% 131
NW_021161845.1 6530 9.99% 548
NW_021161850.1 133601 11.96% 11409
NW_021161853.1 4250 6.44% 345
NW_021161857.1 1800 2.71% 171
NW_021161862.1 800 1.21% 77
NW_021161876.1 6040 8.85% 533
NW_021161878.1 4170 6.13% 347
NW_021161881.1 4390 7.29% 377
NW_021161888.1 6240 8.99% 525
NW_021161902.1 5710 8.81% 472
NW_021161927.1 1720 2.30% 161
NW_021161934.1 3390 4.50% 298
NW_021161939.1 8900 11.75% 755
NW_021161954.1 2770 3.59% 237
NW_021161955.1 2040 2.63% 183
NW_021161956.1 5480 7.18% 468
NW_021161958.1 6680 8.51% 582
NW_021161961.1 3770 4.82% 335
NW_021161962.1 650 0.81% 60
NW_021161965.1 1990 2.52% 182
NW_021161996.1 1910 2.22% 170
NW_021162004.1 670 2.36% 57
NW_021162007.1 1130 1.29% 107
NW_021162009.1 16610 19.05% 1358
NW_021162025.1 3120 3.50% 265
NW_021162035.1 1050 1.13% 98
NW_021162047.1 1880 1.96% 177
NW_021162055.1 6320 6.35% 546
NW_021162083.1 4550 2.64% 411
NW_021162091.1 9050 7.98% 765
NW_021162100.1 9060 7.21% 775
NW_021162108.1 7710 24.19% 621
NW_021162157.1 950 1.58% 82
NW_021162208.1 360 0.14% 36
NW_021162222.1 590 1.56% 58
NW_021162226.1 330 0.76% 28
NW_021162246.1 17870 16.92% 1522
NW_021162251.1 13470 18.86% 1082
NW_021162253.1 130 0.42% 12
NW_021162263.1 240 0.91% 20
NW_021162265.1 5430 14.05% 465
NW_021162274.1 21000 20.68% 1764
NW_021162277.1 1370 5.51% 122
NW_021162463.1 360 4.77% 32
NW_021162495.1 190 2.88% 16
NW_021162553.1 250 2.89% 19
NW_021162593.1 40 0.43% 4
NW_021162599.1 3220 34.35% 266
NW_021162621.1 280 2.87% 22
NW_021162643.1 4470 17.59% 377
NW_021162814.1 130 1.05% 13
NW_021162871.1 450 3.24% 41
NW_021163002.1 20 0.13% 2
2540 contigs with no values (90275519 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 55283738 1 140 12.04 10
global segment-length histogram

Files

Filename Size md5
GPi_Shell.bw 302.46 MB 2a01fa5de43d133353ec491e6140e8fb
genomic_resource.yaml 1.1 KB c265d0c82d2bf585157dadcb3bddce69
statistics/