Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/GPin-BF_Cholinergic_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for GPin-BF_Cholinergic_GABA cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: GPin-BF_Cholinergic_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_GPin-BF_Cholinergic_GABA float

johansen2025Crossspecies_atac_macaque_GPin-BF_Cholinergic_GABA

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_GPin-BF_Cholinergic_GABA [0.117, 63.9]
n
1,022,862,861
mean
0.26
sd
0.372

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 102286286134.42% 84044999
NC_005943.1 1660 10.02% 154
NC_027914.1 1077730 9.17% 93901
NC_041754.1 89049740 39.82% 7302282
NC_041755.1 68758380 35.05% 5642892
NC_041756.1 68025940 36.71% 5582504
NC_041757.1 57897450 34.06% 4752933
NC_041758.1 56212450 30.01% 4640359
NC_041759.1 60301480 33.67% 4960336
NC_041760.1 66110780 38.92% 5422839
NC_041761.1 50669080 34.78% 4162149
NC_041762.1 50507200 37.66% 4141736
NC_041763.1 44238410 44.45% 3619022
NC_041764.1 48790500 36.67% 4001582
NC_041765.1 44586950 34.29% 3663116
NC_041766.1 40397440 37.15% 3312653
NC_041767.1 49802560 38.89% 4095755
NC_041768.1 42477450 37.50% 3488620
NC_041769.1 36466550 45.80% 2992855
NC_041770.1 29220760 30.62% 2404555
NC_041771.1 25592040 34.36% 2098781
NC_041772.1 25478920 43.69% 2094777
NC_041773.1 33407410 43.31% 2737398
NC_041774.1 31362650 20.45% 2627663
NW_021160097.1 370 1.00% 36
NW_021160098.1 1670 4.18% 154
NW_021160099.1 870 2.15% 77
NW_021160102.1 2330 4.64% 195
NW_021160105.1 1930 3.52% 173
NW_021160106.1 4010 7.22% 345
NW_021160107.1 1990 3.58% 171
NW_021160109.1 5600 6.80% 475
NW_021160110.1 14730 12.47% 1267
NW_021160111.1 15860 11.92% 1380
NW_021160113.1 41760 35.90% 3577
NW_021160114.1 7400 11.23% 626
NW_021160116.1 920 2.60% 87
NW_021160121.1 2440 2.83% 215
NW_021160122.1 4260 4.63% 375
NW_021160123.1 3650 6.90% 309
NW_021160125.1 260 1.03% 25
NW_021160136.1 3410 5.71% 290
NW_021160140.1 7270 5.58% 637
NW_021160141.1 6680 4.98% 581
NW_021160142.1 12940 27.06% 1047
NW_021160144.1 136379 11.09% 12014
NW_021160145.1 1560 5.80% 131
NW_021160147.1 1510 5.03% 128
NW_021160148.1 4800 13.99% 388
NW_021160150.1 2200 5.87% 197
NW_021160155.1 3020 5.54% 264
NW_021160158.1 2680 3.56% 233
NW_021160159.1 9330 10.88% 796
NW_021160161.1 69822 9.46% 5893
NW_021160167.1 960 2.54% 88
NW_021160168.1 520 1.25% 47
NW_021160175.1 53300 28.79% 4355
NW_021160179.1 1240 3.19% 114
NW_021160182.1 5580 9.61% 472
NW_021160184.1 2190 3.57% 186
NW_021160185.1 1710 2.75% 148
NW_021160186.1 6410 9.94% 531
NW_021160187.1 1320 1.73% 119
NW_021160188.1 5330 6.43% 432
NW_021160189.1 5500 5.43% 464
NW_021160190.1 4550 12.73% 394
NW_021160191.1 1630 5.85% 135
NW_021160193.1 340 1.09% 32
NW_021160196.1 10705 23.22% 866
NW_021160197.1 2960 5.71% 247
NW_021160199.1 3200 5.72% 282
NW_021160200.1 2010 3.41% 182
NW_021160201.1 8050 13.10% 683
NW_021160202.1 1530 2.34% 131
NW_021160203.1 6060 8.39% 512
NW_021160204.1 5790 7.95% 512
NW_021160205.1 3040 4.15% 271
NW_021160206.1 4690 5.60% 395
NW_021160207.1 4670 4.73% 405
NW_021160209.1 21860 3.26% 1838
NW_021160211.1 7810 5.86% 655
NW_021160220.1 8040 12.05% 659
NW_021160221.1 4680 6.60% 406
NW_021160222.1 1860 2.44% 170
NW_021160223.1 13570 16.29% 1137
NW_021160225.1 6250 11.61% 541
NW_021160226.1 2850 7.91% 243
NW_021160228.1 1430 2.99% 131
NW_021160229.1 3350 6.98% 280
NW_021160231.1 3090 5.67% 276
NW_021160233.1 3320 5.14% 266
NW_021160234.1 14450 22.05% 1205
NW_021160236.1 5300 6.81% 457
NW_021160237.1 17540 20.46% 1433
NW_021160238.1 12100 11.58% 1035
NW_021160239.1 1430 4.90% 125
NW_021160242.1 1210 4.09% 111
NW_021160243.1 780 2.47% 68
NW_021160244.1 17880 50.77% 1529
NW_021160245.1 950 2.17% 85
NW_021160248.1 1630 2.18% 139
NW_021160249.1 5620 7.42% 476
NW_021160250.1 2200 3.42% 180
NW_021160251.1 7080 8.39% 586
NW_021160252.1 8960 10.11% 736
NW_021160255.1 2380 8.48% 191
NW_021160263.1 2000 3.80% 171
NW_021160266.1 1150 1.53% 107
NW_021160268.1 1760 2.60% 164
NW_021160270.1 2920 8.38% 239
NW_021160271.1 1450 4.17% 129
NW_021160272.1 3570 10.20% 304
NW_021160273.1 1390 3.46% 123
NW_021160277.1 370 0.82% 36
NW_021160278.1 4020 7.23% 342
NW_021160279.1 4050 6.14% 364
NW_021160282.1 9050 7.32% 778
NW_021160284.1 1100 3.16% 95
NW_021160285.1 2170 4.86% 184
NW_021160291.1 570 1.26% 54
NW_021160293.1 6000 11.36% 503
NW_021160294.1 8640 10.85% 730
NW_021160295.1 3100 3.76% 283
NW_021160297.1 4150 7.38% 351
NW_021160298.1 2580 9.47% 220
NW_021160300.1 6430 10.33% 525
NW_021160305.1 810 2.01% 72
NW_021160306.1 2280 5.78% 197
NW_021160307.1 4080 7.74% 350
NW_021160308.1 5340 9.90% 443
NW_021160310.1 19620 33.68% 1735
NW_021160311.1 9390 11.92% 807
NW_021160312.1 9930 11.23% 844
NW_021160313.1 9470 10.01% 787
NW_021160319.1 3520 8.10% 295
NW_021160320.1 3640 6.93% 316
NW_021160324.1 7850 12.34% 663
NW_021160325.1 5040 7.74% 419
NW_021160326.1 2900 4.45% 258
NW_021160327.1 5540 8.40% 487
NW_021160328.1 11280 17.81% 959
NW_021160329.1 5050 9.40% 418
NW_021160338.1 930 2.48% 81
NW_021160339.1 460 1.19% 36
NW_021160341.1 2670 5.77% 234
NW_021160347.1 11640 7.04% 999
NW_021160353.1 3380 8.21% 282
NW_021160354.1 1220 2.91% 101
NW_021160355.1 2920 5.26% 262
NW_021160356.1 2590 3.39% 232
NW_021160357.1 800 2.63% 70
NW_021160358.1 3620 9.18% 304
NW_021160359.1 3940 9.60% 325
NW_021160361.1 1360 2.89% 122
NW_021160362.1 1530 2.85% 137
NW_021160363.1 4180 6.86% 371
NW_021160364.1 5320 8.61% 456
NW_021160365.1 4650 7.00% 395
NW_021160366.1 4950 6.95% 430
NW_021160367.1 12560 16.44% 1056
NW_021160368.1 1960 2.48% 181
NW_021160369.1 2060 2.52% 184
NW_021160370.1 6710 7.50% 559
NW_021160371.1 3480 3.85% 304
NW_021160372.1 14290 10.63% 1251
NW_021160373.1 7990 13.74% 673
NW_021160374.1 10440 8.40% 912
NW_021160375.1 18650 10.15% 1595
NW_021160376.1 84180 9.76% 7132
NW_021160381.1 420 0.86% 37
NW_021160383.1 17557 25.45% 1456
NW_021160384.1 1470 1.85% 130
NW_021160401.1 840 5.16% 73
NW_021160410.1 5860 35.61% 516
NW_021160417.1 1910 3.37% 156
NW_021160452.1 1520 8.98% 134
NW_021160482.1 260 1.51% 26
NW_021160484.1 2090 12.01% 162
NW_021160495.1 73260 8.89% 6197
NW_021160514.1 1290 7.16% 114
NW_021160523.1 520 2.88% 41
NW_021160525.1 1070 5.90% 95
NW_021160535.1 2180 11.90% 186
NW_021160549.1 1580 8.51% 134
NW_021160573.1 4370 22.96% 363
NW_021160589.1 80 0.42% 7
NW_021160606.1 51780 5.15% 4442
NW_021160623.1 360 1.82% 32
NW_021160625.1 70 0.35% 7
NW_021160629.1 340 1.71% 26
NW_021160635.1 230 1.15% 22
NW_021160655.1 2060 10.01% 172
NW_021160656.1 790 3.86% 71
NW_021160678.1 270 1.30% 27
NW_021160682.1 8605 41.52% 707
NW_021160688.1 3150 15.43% 274
NW_021160701.1 5650 26.63% 496
NW_021160725.1 320 1.48% 30
NW_021160726.1 12670 58.26% 1176
NW_021160734.1 410 1.88% 37
NW_021160757.1 40 0.18% 4
NW_021160770.1 11972 52.90% 1120
NW_021160772.1 1190 5.25% 107
NW_021160805.1 5510 23.50% 471
NW_021160821.1 220 0.92% 20
NW_021160827.1 44550 6.07% 3712
NW_021160832.1 190 0.79% 18
NW_021160834.1 1090 4.52% 100
NW_021160835.1 20 0.12% 2
NW_021160848.1 150 0.62% 11
NW_021160868.1 40 0.16% 4
NW_021160890.1 1540 6.10% 131
NW_021160903.1 4126 15.58% 332
NW_021160919.1 750 2.88% 67
NW_021160925.1 350 1.34% 32
NW_021160946.1 1640 6.19% 147
NW_021160955.1 1450 5.46% 133
NW_021160961.1 1030 3.85% 95
NW_021160976.1 3300 12.12% 284
NW_021160983.1 170 0.62% 11
NW_021160986.1 40 0.15% 4
NW_021161026.1 40 0.14% 4
NW_021161033.1 40 0.14% 3
NW_021161038.1 860 3.18% 75
NW_021161041.1 1280 4.49% 116
NW_021161043.1 460 1.58% 43
NW_021161046.1 3220 10.91% 275
NW_021161062.1 160 0.54% 16
NW_021161066.1 4480 15.01% 388
NW_021161106.1 2940 9.59% 250
NW_021161107.1 990 3.22% 84
NW_021161113.1 4230 12.54% 353
NW_021161114.1 4570 14.81% 406
NW_021161131.1 80 0.26% 8
NW_021161133.1 3750 2.52% 334
NW_021161138.1 180 0.58% 17
NW_021161152.1 1660 5.27% 146
NW_021161164.1 2940 9.10% 259
NW_021161166.1 3090 9.51% 263
NW_021161184.1 880 2.98% 66
NW_021161201.1 1390 4.19% 122
NW_021161211.1 1660 4.97% 148
NW_021161213.1 240 0.72% 22
NW_021161224.1 4310 12.79% 362
NW_021161226.1 3920 11.76% 323
NW_021161241.1 670 1.95% 63
NW_021161247.1 40 0.12% 4
NW_021161253.1 290 0.84% 25
NW_021161261.1 490 1.40% 46
NW_021161269.1 5570 15.87% 479
NW_021161282.1 13350 34.34% 1156
NW_021161303.1 470 1.31% 44
NW_021161305.1 430 1.19% 38
NW_021161307.1 410 1.54% 36
NW_021161312.1 210 0.59% 19
NW_021161320.1 6370 6.48% 553
NW_021161336.1 3730 10.12% 321
NW_021161338.1 520 1.40% 49
NW_021161340.1 1510 4.11% 121
NW_021161348.1 3310 8.84% 277
NW_021161355.1 3600 9.32% 303
NW_021161360.1 370 0.99% 35
NW_021161364.1 2120 5.55% 181
NW_021161377.1 8950 22.51% 749
NW_021161379.1 120 0.31% 12
NW_021161380.1 110 0.35% 11
NW_021161385.1 410 1.06% 35
NW_021161392.1 6360 16.26% 563
NW_021161394.1 2510 6.46% 218
NW_021161396.1 220 0.56% 22
NW_021161399.1 1600 7.30% 147
NW_021161404.1 570 1.45% 53
NW_021161413.1 990 2.50% 91
NW_021161421.1 550 1.38% 53
NW_021161422.1 460 1.16% 37
NW_021161427.1 1630 4.07% 144
NW_021161433.1 260 0.64% 22
NW_021161437.1 380 1.26% 36
NW_021161446.1 860 2.10% 80
NW_021161463.1 40 0.10% 4
NW_021161468.1 2080 4.96% 187
NW_021161470.1 460 1.10% 42
NW_021161486.1 4860 11.42% 392
NW_021161494.1 850 1.98% 76
NW_021161497.1 400 0.93% 36
NW_021161505.1 4020 9.33% 346
NW_021161507.1 3520 8.13% 298
NW_021161508.1 9750 22.59% 806
NW_021161519.1 3040 6.93% 267
NW_021161520.1 2600 6.03% 235
NW_021161523.1 1730 4.00% 155
NW_021161525.1 6480 14.72% 529
NW_021161526.1 5180 11.76% 444
NW_021161532.1 480 1.08% 39
NW_021161535.1 650 1.46% 59
NW_021161537.1 9470 21.35% 819
NW_021161545.1 10890 24.37% 925
NW_021161552.1 530 1.25% 49
NW_021161554.1 2690 5.96% 235
NW_021161561.1 5400 11.95% 454
NW_021161562.1 7340 16.14% 588
NW_021161567.1 1580 3.47% 136
NW_021161570.1 110 0.24% 11
NW_021161582.1 9370 20.40% 797
NW_021161585.1 7960 17.27% 660
NW_021161590.1 14820 32.21% 1203
NW_021161593.1 11420 24.54% 951
NW_021161596.1 40870 7.58% 3462
NW_021161601.1 4570 9.72% 377
NW_021161608.1 1140 2.44% 99
NW_021161609.1 500 1.06% 45
NW_021161614.1 1150 2.41% 104
NW_021161616.1 4220 8.82% 375
NW_021161617.1 100 0.21% 10
NW_021161627.1 3280 9.81% 269
NW_021161633.1 11390 23.05% 953
NW_021161642.1 2410 4.84% 200
NW_021161648.1 15760 30.97% 1305
NW_021161679.1 4670 8.96% 358
NW_021161680.1 1850 3.58% 163
NW_021161686.1 13870 10.25% 1215
NW_021161694.1 1240 2.73% 107
NW_021161695.1 2050 3.84% 180
NW_021161696.1 1550 2.92% 137
NW_021161699.1 6434 13.31% 532
NW_021161700.1 430 0.81% 38
NW_021161713.1 410 0.76% 39
NW_021161715.1 550 1.01% 46
NW_021161718.1 7780 14.28% 656
NW_021161725.1 3120 9.92% 259
NW_021161737.1 2310 4.14% 203
NW_021161743.1 1670 2.98% 144
NW_021161747.1 280 0.50% 27
NW_021161754.1 11550 20.20% 973
NW_021161759.1 480 0.84% 43
NW_021161767.1 6410 6.28% 547
NW_021161769.1 2400 4.14% 204
NW_021161772.1 2310 3.12% 194
NW_021161784.1 870 16.90% 67
NW_021161790.1 11990 19.87% 979
NW_021161794.1 570 0.94% 54
NW_021161796.1 1120 1.85% 100
NW_021161798.1 3630 7.71% 297
NW_021161830.1 3770 8.42% 329
NW_021161832.1 1860 2.93% 162
NW_021161839.1 1320 2.06% 117
NW_021161842.1 3200 4.91% 295
NW_021161843.1 2380 3.65% 199
NW_021161845.1 12230 18.70% 1023
NW_021161850.1 290461 26.00% 24154
NW_021161853.1 7300 11.06% 598
NW_021161857.1 5080 7.66% 457
NW_021161862.1 1240 1.87% 112
NW_021161876.1 9810 14.37% 813
NW_021161878.1 7390 10.87% 635
NW_021161881.1 6480 10.76% 557
NW_021161888.1 9350 13.47% 786
NW_021161902.1 9600 14.81% 805
NW_021161927.1 2850 3.81% 245
NW_021161934.1 6560 8.71% 550
NW_021161939.1 11420 15.08% 970
NW_021161954.1 5000 6.48% 416
NW_021161955.1 3180 4.10% 274
NW_021161956.1 9880 12.94% 825
NW_021161958.1 11970 15.24% 981
NW_021161961.1 6830 8.73% 587
NW_021161962.1 1400 1.75% 118
NW_021161965.1 4270 5.40% 368
NW_021161996.1 3100 3.61% 273
NW_021162004.1 730 2.57% 58
NW_021162007.1 3620 4.12% 327
NW_021162009.1 24490 28.09% 2029
NW_021162025.1 5160 5.79% 446
NW_021162035.1 1570 1.68% 147
NW_021162047.1 2790 2.92% 253
NW_021162055.1 9820 9.87% 826
NW_021162083.1 10020 5.82% 860
NW_021162091.1 12860 11.34% 1048
NW_021162100.1 12580 10.01% 1114
NW_021162108.1 11410 35.80% 896
NW_021162157.1 1780 2.95% 158
NW_021162208.1 1390 0.56% 134
NW_021162222.1 1510 3.99% 140
NW_021162226.1 1010 2.31% 89
NW_021162246.1 30780 29.14% 2499
NW_021162251.1 20480 28.68% 1659
NW_021162253.1 230 0.73% 21
NW_021162263.1 250 0.94% 19
NW_021162265.1 8820 22.82% 733
NW_021162274.1 28350 27.92% 2418
NW_021162277.1 2170 8.72% 188
NW_021162460.1 20 0.27% 2
NW_021162463.1 590 7.82% 49
NW_021162495.1 300 4.55% 27
NW_021162553.1 270 3.12% 24
NW_021162593.1 140 1.51% 13
NW_021162599.1 4320 46.08% 348
NW_021162621.1 490 5.02% 36
NW_021162643.1 6800 26.76% 545
NW_021162814.1 460 3.71% 40
NW_021162871.1 1040 7.49% 89
NW_021163002.1 90 0.57% 9
2538 contigs with no values (90241530 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 84044999 2 140 12.17 10
global segment-length histogram

Files

Filename Size md5
GPin-BF_Cholinergic_GABA.bw 565.01 MB b0c782c00d2365ef812474eb29480350
genomic_resource.yaml 1.16 KB f365c1405639f9f72cb18cdc6d289daf
statistics/