Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/ImAstro/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for ImAstro cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: ImAstro
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_ImAstro float

johansen2025Crossspecies_atac_macaque_ImAstro

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_ImAstro [0.104, 95.4]
n
585,592,673
mean
0.208
sd
0.49

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 58559267319.71% 49406752
NC_005943.1 2050 12.38% 189
NC_027914.1 725260 6.17% 66477
NC_041754.1 51344680 22.96% 4304290
NC_041755.1 38371390 19.56% 3250409
NC_041756.1 37571580 20.28% 3171793
NC_041757.1 33642660 19.79% 2848340
NC_041758.1 31324790 16.72% 2685284
NC_041759.1 33047630 18.45% 2809121
NC_041760.1 36906090 21.73% 3102370
NC_041761.1 27911910 19.16% 2365009
NC_041762.1 28821620 21.49% 2421797
NC_041763.1 26323340 26.45% 2182412
NC_041764.1 27540270 20.70% 2324339
NC_041765.1 24515356 18.85% 2081732
NC_041766.1 22977210 21.13% 1934738
NC_041767.1 30130270 23.53% 2522665
NC_041768.1 24856040 21.94% 2089818
NC_041769.1 23501640 29.51% 1947156
NC_041770.1 16973360 17.79% 1445170
NC_041771.1 14320150 19.23% 1212618
NC_041772.1 17500240 30.01% 1451327
NC_041773.1 19935310 25.84% 1659889
NC_041774.1 16068580 10.48% 1418078
NW_021160097.1 120 0.32% 11
NW_021160098.1 990 2.48% 91
NW_021160099.1 470 1.16% 44
NW_021160102.1 1280 2.55% 122
NW_021160105.1 590 1.08% 58
NW_021160106.1 1890 3.40% 174
NW_021160107.1 480 0.86% 46
NW_021160109.1 5140 6.25% 450
NW_021160110.1 8270 7.00% 721
NW_021160111.1 5910 4.44% 552
NW_021160113.1 31170 26.79% 2633
NW_021160114.1 4560 6.92% 394
NW_021160116.1 1180 3.33% 101
NW_021160121.1 1570 1.82% 144
NW_021160122.1 3390 3.68% 294
NW_021160123.1 3010 5.69% 262
NW_021160125.1 120 0.47% 12
NW_021160136.1 1630 2.73% 150
NW_021160140.1 2460 1.89% 234
NW_021160141.1 6650 4.96% 580
NW_021160142.1 8030 16.79% 666
NW_021160144.1 101300 8.24% 9220
NW_021160145.1 420 1.56% 38
NW_021160147.1 1030 3.43% 93
NW_021160148.1 3280 9.56% 259
NW_021160150.1 2290 6.11% 207
NW_021160155.1 2920 5.35% 252
NW_021160158.1 2780 3.69% 248
NW_021160159.1 4390 5.12% 391
NW_021160161.1 39692 5.38% 3463
NW_021160167.1 140 0.37% 14
NW_021160168.1 300 0.72% 27
NW_021160175.1 19800 10.69% 1735
NW_021160179.1 680 1.75% 65
NW_021160182.1 2220 3.82% 188
NW_021160184.1 880 1.44% 80
NW_021160185.1 1360 2.19% 121
NW_021160186.1 3890 6.03% 345
NW_021160187.1 450 0.59% 44
NW_021160188.1 1370 1.65% 127
NW_021160189.1 3120 3.08% 276
NW_021160190.1 1320 3.69% 123
NW_021160191.1 1670 5.99% 136
NW_021160193.1 20 0.06% 2
NW_021160196.1 4580 9.93% 374
NW_021160197.1 1900 3.67% 169
NW_021160199.1 870 1.56% 84
NW_021160200.1 1540 2.61% 142
NW_021160201.1 1550 2.52% 141
NW_021160202.1 850 1.30% 79
NW_021160203.1 4700 6.51% 415
NW_021160204.1 2220 3.05% 202
NW_021160205.1 320 0.44% 32
NW_021160206.1 2180 2.60% 196
NW_021160207.1 3610 3.65% 323
NW_021160209.1 10050 1.50% 876
NW_021160211.1 4360 3.27% 387
NW_021160220.1 3850 5.77% 335
NW_021160221.1 1900 2.68% 175
NW_021160222.1 860 1.13% 78
NW_021160223.1 6120 7.35% 508
NW_021160225.1 2720 5.05% 229
NW_021160226.1 1570 4.36% 142
NW_021160228.1 1120 2.34% 102
NW_021160229.1 1180 2.46% 111
NW_021160231.1 1060 1.95% 94
NW_021160233.1 1540 2.38% 137
NW_021160234.1 7890 12.04% 643
NW_021160236.1 1500 1.93% 135
NW_021160237.1 5060 5.90% 460
NW_021160238.1 5810 5.56% 507
NW_021160239.1 940 3.22% 84
NW_021160242.1 850 2.88% 80
NW_021160243.1 80 0.25% 8
NW_021160244.1 9840 27.94% 792
NW_021160245.1 1280 2.92% 116
NW_021160248.1 1130 1.51% 105
NW_021160249.1 3650 4.82% 320
NW_021160250.1 1200 1.87% 108
NW_021160251.1 3590 4.25% 318
NW_021160252.1 4210 4.75% 377
NW_021160255.1 1640 5.84% 138
NW_021160263.1 380 0.72% 38
NW_021160266.1 690 0.92% 67
NW_021160268.1 1170 1.73% 104
NW_021160270.1 1100 3.16% 94
NW_021160271.1 1050 3.02% 99
NW_021160272.1 2590 7.40% 208
NW_021160273.1 790 1.97% 75
NW_021160277.1 360 0.80% 34
NW_021160278.1 1410 2.53% 136
NW_021160279.1 2740 4.15% 241
NW_021160282.1 2880 2.33% 254
NW_021160284.1 60 0.17% 6
NW_021160285.1 1140 2.56% 105
NW_021160291.1 320 0.71% 29
NW_021160293.1 3200 6.06% 275
NW_021160294.1 3960 4.97% 342
NW_021160295.1 2100 2.54% 188
NW_021160297.1 3390 6.03% 285
NW_021160298.1 860 3.16% 79
NW_021160300.1 5030 8.08% 432
NW_021160305.1 80 0.20% 8
NW_021160306.1 1930 4.89% 157
NW_021160307.1 1850 3.51% 171
NW_021160308.1 1770 3.28% 164
NW_021160310.1 9470 16.25% 765
NW_021160311.1 9160 11.63% 778
NW_021160312.1 7910 8.95% 680
NW_021160313.1 3530 3.73% 302
NW_021160319.1 1220 2.81% 111
NW_021160320.1 1470 2.80% 131
NW_021160324.1 4780 7.51% 409
NW_021160325.1 1000 1.53% 95
NW_021160326.1 4840 7.43% 419
NW_021160327.1 2580 3.91% 225
NW_021160328.1 9200 14.53% 786
NW_021160329.1 1300 2.42% 121
NW_021160338.1 290 0.77% 27
NW_021160339.1 720 1.87% 65
NW_021160341.1 1330 2.87% 122
NW_021160347.1 6990 4.23% 618
NW_021160353.1 4810 11.68% 404
NW_021160354.1 1790 4.26% 148
NW_021160355.1 1830 3.29% 170
NW_021160356.1 930 1.22% 84
NW_021160357.1 1430 4.70% 120
NW_021160358.1 2790 7.07% 236
NW_021160359.1 1670 4.07% 150
NW_021160361.1 450 0.96% 43
NW_021160362.1 1110 2.07% 102
NW_021160363.1 7230 11.87% 596
NW_021160364.1 3920 6.34% 337
NW_021160365.1 3930 5.92% 344
NW_021160366.1 3780 5.30% 345
NW_021160367.1 6910 9.05% 586
NW_021160368.1 1050 1.33% 94
NW_021160369.1 820 1.00% 76
NW_021160370.1 4760 5.32% 405
NW_021160371.1 990 1.09% 95
NW_021160372.1 6750 5.02% 582
NW_021160373.1 3170 5.45% 282
NW_021160374.1 5370 4.32% 471
NW_021160375.1 8810 4.79% 788
NW_021160376.1 39180 4.54% 3481
NW_021160381.1 80 0.16% 8
NW_021160383.1 6340 9.19% 545
NW_021160384.1 1230 1.54% 113
NW_021160401.1 420 2.58% 36
NW_021160410.1 3390 20.60% 274
NW_021160417.1 1070 1.89% 99
NW_021160452.1 620 3.66% 52
NW_021160484.1 1260 7.24% 109
NW_021160495.1 28690 3.48% 2592
NW_021160514.1 370 2.05% 34
NW_021160523.1 130 0.72% 10
NW_021160525.1 610 3.36% 58
NW_021160535.1 1200 6.55% 108
NW_021160549.1 550 2.96% 51
NW_021160573.1 2340 12.29% 191
NW_021160589.1 80 0.42% 8
NW_021160606.1 39000 3.88% 3416
NW_021160623.1 900 4.55% 76
NW_021160625.1 40 0.20% 4
NW_021160629.1 60 0.30% 5
NW_021160635.1 20 0.10% 2
NW_021160655.1 1340 6.51% 119
NW_021160656.1 280 1.37% 26
NW_021160678.1 40 0.19% 4
NW_021160682.1 4955 23.91% 404
NW_021160688.1 2310 11.31% 204
NW_021160701.1 3680 17.35% 304
NW_021160725.1 210 0.97% 19
NW_021160726.1 10070 46.30% 879
NW_021160734.1 200 0.92% 17
NW_021160770.1 9710 42.90% 840
NW_021160772.1 1050 4.63% 94
NW_021160805.1 2700 11.52% 225
NW_021160821.1 130 0.54% 13
NW_021160827.1 25300 3.45% 2104
NW_021160832.1 20 0.08% 2
NW_021160834.1 840 3.48% 80
NW_021160835.1 20 0.12% 2
NW_021160848.1 120 0.49% 10
NW_021160868.1 20 0.08% 2
NW_021160890.1 740 2.93% 66
NW_021160903.1 3670 13.86% 300
NW_021160919.1 440 1.69% 33
NW_021160925.1 340 1.30% 33
NW_021160946.1 1690 6.38% 150
NW_021160955.1 830 3.13% 72
NW_021160961.1 280 1.05% 25
NW_021160976.1 2350 8.63% 203
NW_021160983.1 20 0.07% 2
NW_021160986.1 20 0.07% 2
NW_021161033.1 40 0.14% 4
NW_021161038.1 1940 7.17% 168
NW_021161041.1 590 2.07% 54
NW_021161043.1 70 0.24% 5
NW_021161046.1 2790 9.46% 230
NW_021161062.1 260 0.88% 24
NW_021161066.1 2230 7.47% 192
NW_021161106.1 1550 5.06% 137
NW_021161107.1 330 1.07% 31
NW_021161113.1 870 2.58% 82
NW_021161114.1 3470 11.25% 305
NW_021161131.1 20 0.06% 2
NW_021161133.1 1870 1.26% 167
NW_021161138.1 90 0.29% 8
NW_021161152.1 570 1.81% 52
NW_021161164.1 1340 4.15% 120
NW_021161166.1 2610 8.03% 228
NW_021161184.1 270 0.91% 27
NW_021161201.1 650 1.96% 58
NW_021161211.1 940 2.82% 86
NW_021161213.1 190 0.57% 19
NW_021161224.1 1830 5.43% 156
NW_021161226.1 1930 5.79% 153
NW_021161241.1 140 0.41% 12
NW_021161247.1 40 0.12% 4
NW_021161253.1 20 0.06% 2
NW_021161261.1 740 2.12% 67
NW_021161269.1 1360 3.87% 128
NW_021161282.1 6800 17.49% 556
NW_021161303.1 290 0.81% 28
NW_021161305.1 140 0.39% 13
NW_021161307.1 300 1.13% 29
NW_021161312.1 100 0.28% 9
NW_021161320.1 2520 2.57% 230
NW_021161336.1 560 1.52% 51
NW_021161338.1 220 0.59% 22
NW_021161340.1 860 2.34% 78
NW_021161348.1 1120 2.99% 98
NW_021161355.1 2080 5.38% 181
NW_021161360.1 260 0.69% 25
NW_021161364.1 1300 3.40% 100
NW_021161377.1 3180 8.00% 280
NW_021161379.1 140 0.37% 13
NW_021161380.1 50 0.16% 5
NW_021161385.1 90 0.23% 8
NW_021161392.1 3110 7.95% 272
NW_021161394.1 1010 2.60% 90
NW_021161396.1 80 0.20% 8
NW_021161399.1 1470 6.71% 122
NW_021161404.1 580 1.47% 55
NW_021161413.1 1770 4.47% 155
NW_021161421.1 140 0.35% 14
NW_021161422.1 90 0.23% 9
NW_021161427.1 730 1.82% 63
NW_021161433.1 320 0.79% 31
NW_021161437.1 240 0.80% 23
NW_021161446.1 510 1.25% 50
NW_021161463.1 80 0.19% 8
NW_021161468.1 750 1.79% 72
NW_021161470.1 270 0.64% 24
NW_021161483.1 40 0.09% 4
NW_021161486.1 2840 6.67% 230
NW_021161494.1 230 0.54% 23
NW_021161497.1 240 0.56% 23
NW_021161505.1 890 2.07% 84
NW_021161507.1 1160 2.68% 106
NW_021161508.1 3410 7.90% 293
NW_021161519.1 2629 5.99% 232
NW_021161520.1 3660 8.49% 335
NW_021161523.1 1210 2.80% 113
NW_021161525.1 2830 6.43% 251
NW_021161526.1 1510 3.43% 132
NW_021161532.1 330 0.74% 33
NW_021161535.1 760 1.70% 67
NW_021161537.1 5090 11.48% 435
NW_021161545.1 6480 14.50% 526
NW_021161552.1 220 0.52% 22
NW_021161554.1 1150 2.55% 109
NW_021161561.1 3830 8.48% 311
NW_021161562.1 3480 7.65% 294
NW_021161567.1 470 1.03% 44
NW_021161570.1 70 0.15% 7
NW_021161582.1 2820 6.14% 251
NW_021161585.1 3610 7.83% 315
NW_021161590.1 9510 20.67% 786
NW_021161593.1 4620 9.93% 399
NW_021161596.1 20090 3.73% 1701
NW_021161601.1 1180 2.51% 105
NW_021161608.1 380 0.81% 31
NW_021161609.1 240 0.51% 21
NW_021161614.1 1760 3.69% 157
NW_021161616.1 2600 5.43% 243
NW_021161617.1 120 0.25% 11
NW_021161627.1 1220 3.65% 109
NW_021161633.1 7400 14.98% 633
NW_021161642.1 550 1.11% 50
NW_021161648.1 9770 19.20% 806
NW_021161679.1 1370 2.63% 119
NW_021161680.1 1110 2.15% 103
NW_021161686.1 6690 4.94% 574
NW_021161694.1 670 1.47% 60
NW_021161695.1 1290 2.41% 120
NW_021161696.1 820 1.55% 76
NW_021161699.1 2420 5.00% 208
NW_021161700.1 60 0.11% 6
NW_021161713.1 370 0.69% 37
NW_021161715.1 140 0.26% 14
NW_021161718.1 5490 10.08% 447
NW_021161725.1 930 2.96% 86
NW_021161737.1 1630 2.92% 153
NW_021161743.1 640 1.14% 55
NW_021161747.1 150 0.27% 15
NW_021161754.1 6040 10.56% 513
NW_021161759.1 230 0.40% 23
NW_021161767.1 2610 2.56% 230
NW_021161769.1 930 1.60% 80
NW_021161772.1 1380 1.87% 122
NW_021161784.1 510 9.91% 43
NW_021161790.1 5950 9.86% 500
NW_021161794.1 570 0.94% 55
NW_021161796.1 810 1.34% 77
NW_021161798.1 2030 4.31% 179
NW_021161830.1 1800 4.02% 173
NW_021161832.1 630 0.99% 54
NW_021161839.1 1050 1.64% 97
NW_021161842.1 1680 2.58% 159
NW_021161843.1 1070 1.64% 94
NW_021161845.1 8880 13.58% 749
NW_021161850.1 116131 10.39% 10121
NW_021161853.1 5300 8.03% 464
NW_021161857.1 1160 1.75% 112
NW_021161862.1 1500 2.27% 136
NW_021161876.1 2970 4.35% 267
NW_021161878.1 2750 4.04% 237
NW_021161881.1 4320 7.17% 369
NW_021161888.1 3880 5.59% 324
NW_021161902.1 2840 4.38% 253
NW_021161927.1 1560 2.09% 144
NW_021161934.1 1430 1.90% 128
NW_021161939.1 4240 5.60% 384
NW_021161954.1 2660 3.45% 230
NW_021161955.1 1890 2.44% 168
NW_021161956.1 7230 9.47% 612
NW_021161958.1 4010 5.11% 370
NW_021161961.1 7410 9.48% 635
NW_021161962.1 470 0.59% 44
NW_021161965.1 1890 2.39% 176
NW_021161996.1 1840 2.14% 162
NW_021162004.1 200 0.70% 19
NW_021162007.1 3200 3.64% 278
NW_021162009.1 20640 23.68% 1695
NW_021162025.1 2350 2.64% 212
NW_021162035.1 1650 1.77% 144
NW_021162047.1 1100 1.15% 109
NW_021162055.1 5100 5.13% 437
NW_021162083.1 4310 2.50% 387
NW_021162091.1 6590 5.81% 545
NW_021162100.1 7630 6.07% 636
NW_021162108.1 5280 16.57% 439
NW_021162157.1 890 1.48% 80
NW_021162185.1 20 0.23% 2
NW_021162208.1 630 0.25% 62
NW_021162222.1 1140 3.01% 107
NW_021162226.1 1310 3.00% 119
NW_021162246.1 8760 8.29% 775
NW_021162251.1 6270 8.78% 548
NW_021162253.1 40 0.13% 4
NW_021162263.1 260 0.98% 24
NW_021162265.1 6320 16.35% 509
NW_021162274.1 11510 11.34% 992
NW_021162277.1 1140 4.58% 99
NW_021162460.1 40 0.53% 4
NW_021162463.1 200 2.65% 18
NW_021162495.1 60 0.91% 6
NW_021162553.1 90 1.04% 9
NW_021162593.1 100 1.08% 8
NW_021162599.1 1750 18.67% 148
NW_021162621.1 270 2.76% 24
NW_021162643.1 3010 11.84% 256
NW_021162814.1 80 0.65% 8
NW_021162871.1 80 0.58% 8
NW_021162949.1 40 0.27% 4
2539 contigs with no values (90258571 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 49406752 1 150 11.85 10
global segment-length histogram

Files

Filename Size md5
ImAstro.bw 275.89 MB cf2263c58bc5d7610c6d5ac445e854fa
genomic_resource.yaml 1.09 KB 5a0c8d39c8e42de10fd0d85387d5a36a
statistics/