Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/ImOligo/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for ImOligo cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: ImOligo
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_ImOligo float

johansen2025Crossspecies_atac_macaque_ImOligo

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_ImOligo [0.0415, 179]
n
1,000,780,450
mean
0.115
sd
0.427

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 100078045033.68% 82543949
NC_005943.1 2100 12.68% 202
NC_027914.1 1711200 14.56% 146498
NC_041754.1 85579230 38.27% 7063098
NC_041755.1 67884380 34.60% 5572127
NC_041756.1 64882980 35.02% 5334495
NC_041757.1 58953820 34.69% 4846874
NC_041758.1 58447630 31.20% 4800290
NC_041759.1 59576150 33.27% 4892623
NC_041760.1 62562810 36.83% 5153618
NC_041761.1 49649260 34.08% 4072603
NC_041762.1 46422740 34.61% 3835015
NC_041763.1 39316140 39.51% 3251458
NC_041764.1 47287170 35.54% 3901311
NC_041765.1 45346250 34.87% 3716132
NC_041766.1 39171270 36.02% 3219133
NC_041767.1 48985750 38.25% 4049742
NC_041768.1 42069360 37.14% 3465036
NC_041769.1 35225310 44.24% 2933980
NC_041770.1 31933300 33.46% 2614250
NC_041771.1 25198550 33.84% 2060629
NC_041772.1 26255710 45.02% 2219054
NC_041773.1 31110365 40.33% 2585956
NC_041774.1 30824220 20.10% 2606891
NW_021160097.1 290 0.78% 27
NW_021160098.1 1330 3.33% 116
NW_021160099.1 510 1.26% 50
NW_021160102.1 1970 3.93% 171
NW_021160105.1 1730 3.15% 146
NW_021160106.1 4320 7.78% 368
NW_021160107.1 1080 1.94% 103
NW_021160109.1 8640 10.50% 746
NW_021160110.1 15660 13.26% 1339
NW_021160111.1 12740 9.58% 1109
NW_021160113.1 46180 39.70% 4011
NW_021160114.1 7260 11.01% 624
NW_021160116.1 2300 6.50% 199
NW_021160121.1 3500 4.06% 311
NW_021160122.1 7290 7.92% 636
NW_021160123.1 4230 7.99% 342
NW_021160125.1 80 0.32% 8
NW_021160136.1 1430 2.39% 132
NW_021160140.1 5860 4.50% 511
NW_021160141.1 11470 8.55% 1004
NW_021160142.1 13280 27.77% 1068
NW_021160144.1 224209 18.23% 19128
NW_021160145.1 1080 4.02% 94
NW_021160147.1 2510 8.36% 196
NW_021160148.1 3590 10.46% 282
NW_021160150.1 2700 7.20% 241
NW_021160155.1 4860 8.91% 408
NW_021160158.1 5960 7.91% 516
NW_021160159.1 9310 10.85% 804
NW_021160161.1 77132 10.45% 6453
NW_021160167.1 430 1.14% 41
NW_021160168.1 430 1.03% 39
NW_021160175.1 50580 27.32% 4154
NW_021160179.1 2190 5.63% 179
NW_021160182.1 3630 6.25% 307
NW_021160184.1 2590 4.23% 222
NW_021160185.1 2620 4.22% 224
NW_021160186.1 6790 10.53% 593
NW_021160187.1 1670 2.19% 145
NW_021160188.1 2560 3.09% 226
NW_021160189.1 6480 6.39% 565
NW_021160190.1 3050 8.54% 257
NW_021160191.1 2180 7.83% 185
NW_021160193.1 250 0.80% 25
NW_021160196.1 11290 24.49% 921
NW_021160197.1 3980 7.68% 348
NW_021160199.1 2500 4.47% 221
NW_021160200.1 1950 3.31% 169
NW_021160201.1 3050 4.96% 256
NW_021160202.1 1660 2.54% 145
NW_021160203.1 8240 11.41% 691
NW_021160204.1 3750 5.15% 330
NW_021160205.1 1190 1.62% 111
NW_021160206.1 6230 7.44% 534
NW_021160207.1 4160 4.21% 372
NW_021160209.1 19910 2.97% 1638
NW_021160211.1 7890 5.92% 652
NW_021160220.1 5250 7.87% 435
NW_021160221.1 3510 4.95% 314
NW_021160222.1 1890 2.47% 173
NW_021160223.1 8230 9.88% 695
NW_021160225.1 4220 7.84% 361
NW_021160226.1 2390 6.63% 206
NW_021160228.1 1690 3.53% 151
NW_021160229.1 2620 5.46% 234
NW_021160231.1 2020 3.71% 184
NW_021160233.1 4200 6.50% 343
NW_021160234.1 12200 18.61% 1018
NW_021160236.1 3120 4.01% 267
NW_021160237.1 9500 11.08% 812
NW_021160238.1 11480 10.99% 968
NW_021160239.1 1020 3.50% 96
NW_021160242.1 2360 7.99% 202
NW_021160243.1 240 0.76% 24
NW_021160244.1 8880 25.21% 727
NW_021160245.1 1790 4.09% 152
NW_021160248.1 1740 2.33% 155
NW_021160249.1 6230 8.23% 521
NW_021160250.1 1650 2.57% 142
NW_021160251.1 4360 5.16% 372
NW_021160252.1 7800 8.80% 653
NW_021160255.1 2370 8.44% 214
NW_021160263.1 600 1.14% 60
NW_021160266.1 1270 1.69% 118
NW_021160268.1 2440 3.60% 216
NW_021160270.1 1130 3.24% 98
NW_021160271.1 2350 6.76% 198
NW_021160272.1 3950 11.29% 347
NW_021160273.1 1510 3.76% 133
NW_021160277.1 410 0.91% 35
NW_021160278.1 2220 3.99% 209
NW_021160279.1 4900 7.43% 416
NW_021160282.1 3780 3.06% 338
NW_021160284.1 1070 3.08% 88
NW_021160285.1 4070 9.12% 348
NW_021160291.1 530 1.17% 52
NW_021160293.1 6370 12.06% 528
NW_021160294.1 7650 9.61% 655
NW_021160295.1 4810 5.83% 413
NW_021160297.1 6220 11.06% 521
NW_021160298.1 940 3.45% 86
NW_021160300.1 8630 13.86% 736
NW_021160305.1 280 0.69% 26
NW_021160306.1 4060 10.29% 330
NW_021160307.1 4110 7.80% 366
NW_021160308.1 3220 5.97% 282
NW_021160310.1 12190 20.92% 1021
NW_021160311.1 14750 18.73% 1211
NW_021160312.1 12580 14.23% 1066
NW_021160313.1 12200 12.89% 1009
NW_021160319.1 2390 5.50% 214
NW_021160320.1 3210 6.11% 274
NW_021160324.1 8170 12.84% 696
NW_021160325.1 2170 3.33% 201
NW_021160326.1 7940 12.19% 693
NW_021160327.1 8169 12.38% 721
NW_021160328.1 13100 20.69% 1112
NW_021160329.1 2920 5.44% 251
NW_021160338.1 620 1.65% 58
NW_021160339.1 1220 3.17% 110
NW_021160341.1 3910 8.44% 334
NW_021160347.1 13220 8.00% 1160
NW_021160353.1 3770 9.16% 315
NW_021160354.1 3150 7.50% 265
NW_021160355.1 9160 16.49% 769
NW_021160356.1 2250 2.95% 197
NW_021160357.1 3810 12.51% 314
NW_021160358.1 5630 14.27% 473
NW_021160359.1 2900 7.06% 244
NW_021160361.1 1760 3.74% 155
NW_021160362.1 1790 3.34% 161
NW_021160363.1 11860 19.47% 996
NW_021160364.1 6200 10.03% 522
NW_021160365.1 4460 6.71% 384
NW_021160366.1 6630 9.30% 578
NW_021160367.1 12670 16.59% 1075
NW_021160368.1 980 1.24% 91
NW_021160369.1 1240 1.52% 112
NW_021160370.1 11660 13.03% 967
NW_021160371.1 1600 1.77% 153
NW_021160372.1 13120 9.76% 1136
NW_021160373.1 6480 11.14% 561
NW_021160374.1 11660 9.38% 1003
NW_021160375.1 15420 8.39% 1330
NW_021160376.1 63570 7.37% 5451
NW_021160381.1 200 0.41% 18
NW_021160383.1 11050 16.02% 897
NW_021160384.1 2940 3.69% 261
NW_021160401.1 1240 7.62% 108
NW_021160410.1 5450 33.12% 442
NW_021160417.1 2260 3.99% 186
NW_021160452.1 1130 6.67% 94
NW_021160482.1 20 0.12% 2
NW_021160484.1 1920 11.04% 156
NW_021160495.1 57760 7.01% 5061
NW_021160514.1 1230 6.83% 102
NW_021160523.1 180 1.00% 18
NW_021160525.1 1090 6.01% 88
NW_021160535.1 1700 9.28% 138
NW_021160549.1 840 4.52% 68
NW_021160573.1 3810 20.02% 318
NW_021160589.1 90 0.47% 8
NW_021160606.1 59730 5.94% 5071
NW_021160623.1 970 4.90% 82
NW_021160625.1 170 0.86% 16
NW_021160629.1 160 0.80% 16
NW_021160635.1 160 0.80% 13
NW_021160655.1 2870 13.95% 243
NW_021160656.1 670 3.27% 62
NW_021160678.1 420 2.02% 41
NW_021160682.1 8490 40.97% 700
NW_021160688.1 4140 20.28% 364
NW_021160701.1 5720 26.96% 486
NW_021160725.1 730 3.37% 65
NW_021160726.1 12470 57.34% 1143
NW_021160734.1 500 2.30% 45
NW_021160737.1 40 0.18% 4
NW_021160757.1 60 0.27% 5
NW_021160770.1 11640 51.43% 1075
NW_021160772.1 2120 9.35% 175
NW_021160805.1 4830 20.60% 400
NW_021160821.1 400 1.67% 36
NW_021160827.1 57130 7.79% 4946
NW_021160832.1 320 1.33% 31
NW_021160834.1 1670 6.92% 145
NW_021160835.1 40 0.24% 4
NW_021160848.1 210 0.86% 17
NW_021160868.1 40 0.16% 4
NW_021160890.1 1760 6.97% 156
NW_021160903.1 5210 19.67% 442
NW_021160919.1 640 2.46% 55
NW_021160925.1 890 3.41% 81
NW_021160946.1 2000 7.55% 183
NW_021160955.1 1160 4.37% 104
NW_021160961.1 1220 4.56% 112
NW_021160976.1 4170 15.32% 337
NW_021160983.1 120 0.44% 12
NW_021160986.1 20 0.07% 2
NW_021161026.1 100 0.36% 9
NW_021161033.1 40 0.14% 4
NW_021161038.1 2910 10.75% 259
NW_021161041.1 1180 4.14% 103
NW_021161043.1 110 0.38% 11
NW_021161046.1 3480 11.79% 310
NW_021161062.1 600 2.03% 50
NW_021161066.1 7330 24.57% 615
NW_021161106.1 3300 10.77% 282
NW_021161107.1 1030 3.35% 89
NW_021161113.1 2600 7.71% 231
NW_021161114.1 4560 14.78% 408
NW_021161131.1 60 0.19% 6
NW_021161133.1 3270 2.20% 291
NW_021161138.1 160 0.51% 16
NW_021161152.1 1460 4.64% 120
NW_021161164.1 2050 6.34% 185
NW_021161166.1 5080 15.63% 434
NW_021161184.1 1160 3.93% 102
NW_021161201.1 1940 5.84% 159
NW_021161211.1 2110 6.32% 190
NW_021161213.1 660 1.98% 57
NW_021161224.1 3350 9.94% 283
NW_021161226.1 4480 13.44% 396
NW_021161241.1 300 0.87% 28
NW_021161253.1 200 0.58% 16
NW_021161261.1 970 2.77% 89
NW_021161269.1 4590 13.08% 388
NW_021161274.1 20 0.06% 2
NW_021161282.1 13770 35.42% 1203
NW_021161303.1 850 2.36% 78
NW_021161305.1 560 1.55% 50
NW_021161307.1 550 2.07% 50
NW_021161312.1 330 0.92% 32
NW_021161320.1 7060 7.19% 587
NW_021161336.1 1390 3.77% 119
NW_021161338.1 620 1.67% 55
NW_021161340.1 1430 3.89% 119
NW_021161348.1 5470 14.61% 450
NW_021161355.1 4910 12.71% 428
NW_021161360.1 500 1.33% 46
NW_021161364.1 2250 5.89% 183
NW_021161377.1 7550 18.99% 619
NW_021161379.1 360 0.94% 34
NW_021161380.1 180 0.57% 17
NW_021161385.1 890 2.29% 79
NW_021161392.1 4810 12.30% 415
NW_021161394.1 2090 5.38% 170
NW_021161396.1 100 0.26% 10
NW_021161399.1 3370 15.37% 285
NW_021161404.1 870 2.21% 75
NW_021161413.1 2440 6.16% 197
NW_021161421.1 250 0.63% 23
NW_021161422.1 170 0.43% 15
NW_021161427.1 1000 2.49% 90
NW_021161433.1 400 0.99% 37
NW_021161437.1 560 1.86% 55
NW_021161446.1 1340 3.28% 119
NW_021161463.1 60 0.14% 6
NW_021161468.1 1030 2.46% 98
NW_021161470.1 400 0.95% 35
NW_021161483.1 30 0.07% 3
NW_021161486.1 4950 11.63% 390
NW_021161494.1 500 1.17% 44
NW_021161497.1 590 1.37% 50
NW_021161505.1 2200 5.11% 195
NW_021161507.1 2760 6.38% 234
NW_021161508.1 5320 12.33% 443
NW_021161519.1 7830 17.85% 654
NW_021161520.1 5070 11.76% 466
NW_021161523.1 2000 4.62% 165
NW_021161525.1 5600 12.72% 455
NW_021161526.1 3520 7.99% 304
NW_021161532.1 750 1.69% 68
NW_021161535.1 1190 2.66% 108
NW_021161537.1 7980 17.99% 657
NW_021161545.1 8920 19.96% 732
NW_021161552.1 520 1.22% 50
NW_021161554.1 5930 13.13% 507
NW_021161561.1 6080 13.46% 494
NW_021161562.1 5970 13.13% 487
NW_021161567.1 1290 2.83% 116
NW_021161570.1 90 0.20% 9
NW_021161582.1 5860 12.76% 505
NW_021161585.1 5260 11.41% 433
NW_021161590.1 15790 34.32% 1271
NW_021161593.1 10170 21.85% 823
NW_021161596.1 49080 9.10% 4151
NW_021161601.1 2770 5.89% 238
NW_021161608.1 1120 2.40% 94
NW_021161609.1 640 1.36% 54
NW_021161614.1 1180 2.47% 103
NW_021161616.1 3020 6.31% 277
NW_021161617.1 380 0.79% 38
NW_021161627.1 2220 6.64% 189
NW_021161633.1 12510 25.32% 1029
NW_021161642.1 1420 2.85% 120
NW_021161648.1 18130 35.63% 1531
NW_021161679.1 1720 3.30% 147
NW_021161680.1 2240 4.33% 191
NW_021161686.1 12170 9.00% 1036
NW_021161694.1 1400 3.08% 122
NW_021161695.1 2880 5.39% 248
NW_021161696.1 1280 2.41% 114
NW_021161699.1 10164 21.02% 850
NW_021161700.1 410 0.77% 35
NW_021161713.1 600 1.11% 59
NW_021161715.1 380 0.70% 35
NW_021161718.1 9420 17.29% 765
NW_021161725.1 2300 7.31% 199
NW_021161737.1 2820 5.05% 253
NW_021161743.1 1190 2.13% 106
NW_021161747.1 250 0.44% 23
NW_021161754.1 14010 24.50% 1182
NW_021161759.1 470 0.82% 38
NW_021161767.1 3710 3.63% 310
NW_021161769.1 1810 3.12% 148
NW_021161772.1 2810 3.80% 243
NW_021161784.1 1400 27.20% 123
NW_021161790.1 8750 14.50% 704
NW_021161794.1 1140 1.89% 106
NW_021161796.1 1500 2.48% 131
NW_021161798.1 3300 7.01% 277
NW_021161830.1 2960 6.61% 271
NW_021161832.1 1370 2.16% 126
NW_021161839.1 1900 2.97% 170
NW_021161842.1 2760 4.23% 248
NW_021161843.1 4340 6.66% 362
NW_021161845.1 14460 22.11% 1205
NW_021161850.1 202781 18.15% 16960
NW_021161853.1 8750 13.26% 736
NW_021161857.1 2950 4.45% 263
NW_021161862.1 2310 3.49% 208
NW_021161876.1 5910 8.66% 511
NW_021161878.1 4900 7.21% 421
NW_021161881.1 6140 10.19% 513
NW_021161888.1 8530 12.29% 753
NW_021161902.1 5080 7.84% 418
NW_021161927.1 2470 3.30% 217
NW_021161934.1 3610 4.79% 309
NW_021161939.1 8270 10.92% 704
NW_021161954.1 5930 7.69% 497
NW_021161955.1 3800 4.90% 315
NW_021161956.1 12270 16.07% 1032
NW_021161958.1 5730 7.30% 493
NW_021161961.1 14500 18.54% 1235
NW_021161962.1 1300 1.63% 120
NW_021161965.1 3560 4.50% 312
NW_021161996.1 3300 3.84% 286
NW_021162004.1 660 2.32% 53
NW_021162007.1 4870 5.54% 416
NW_021162009.1 24500 28.10% 2087
NW_021162025.1 6050 6.79% 509
NW_021162035.1 2690 2.88% 238
NW_021162047.1 2130 2.23% 192
NW_021162055.1 12360 12.42% 1045
NW_021162083.1 9720 5.64% 873
NW_021162091.1 12310 10.85% 1016
NW_021162100.1 12820 10.20% 1134
NW_021162108.1 15160 47.56% 1263
NW_021162157.1 1390 2.31% 132
NW_021162185.1 20 0.23% 2
NW_021162208.1 2060 0.83% 197
NW_021162222.1 3070 8.11% 276
NW_021162226.1 2630 6.02% 220
NW_021162246.1 15320 14.50% 1296
NW_021162251.1 12280 17.19% 1026
NW_021162253.1 150 0.48% 14
NW_021162263.1 690 2.60% 59
NW_021162265.1 7730 20.00% 613
NW_021162274.1 19350 19.06% 1657
NW_021162277.1 1430 5.75% 126
NW_021162460.1 60 0.80% 6
NW_021162463.1 490 6.49% 40
NW_021162495.1 760 11.54% 70
NW_021162553.1 200 2.31% 18
NW_021162593.1 170 1.83% 17
NW_021162599.1 3510 37.44% 281
NW_021162621.1 540 5.53% 46
NW_021162643.1 8230 32.38% 683
NW_021162814.1 250 2.02% 23
NW_021162871.1 410 2.95% 37
NW_021162949.1 20 0.13% 2
NW_021163002.1 60 0.38% 6
2534 contigs with no values (90153349 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 82543949 1 140 12.12 10
global segment-length histogram

Files

Filename Size md5
ImOligo.bw 555.04 MB 31457daf479a8a181b60caa5afe3bf70
genomic_resource.yaml 1.09 KB fc353c9d4e44a4105f3c6601f45a6c4c
statistics/