Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/LAMP5-CXCL14_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for LAMP5-CXCL14_GABA cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: LAMP5-CXCL14_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_LAMP5-CXCL14_GABA float

johansen2025Crossspecies_atac_macaque_LAMP5-CXCL14_GABA

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_LAMP5-CXCL14_GABA [0.0902, 49.5]
n
982,844,118
mean
0.206
sd
0.363

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 98284411833.08% 80979854
NC_005943.1 1720 10.38% 157
NC_027914.1 913570 7.77% 80158
NC_041754.1 85777480 38.36% 7053937
NC_041755.1 66253910 33.77% 5446351
NC_041756.1 63592930 34.32% 5228777
NC_041757.1 54879170 32.29% 4516380
NC_041758.1 51154440 27.31% 4238487
NC_041759.1 57448940 32.08% 4733813
NC_041760.1 63029780 37.11% 5176593
NC_041761.1 47219450 32.41% 3886346
NC_041762.1 48024900 35.81% 3936997
NC_041763.1 46144740 46.37% 3789902
NC_041764.1 48756720 36.64% 4010978
NC_041765.1 43000720 33.07% 3531309
NC_041766.1 39197960 36.05% 3216882
NC_041767.1 48813630 38.12% 4025007
NC_041768.1 40423200 35.68% 3333424
NC_041769.1 37572350 47.19% 3102635
NC_041770.1 28204300 29.55% 2327610
NC_041771.1 24007750 32.24% 1973103
NC_041772.1 25920200 44.45% 2164888
NC_041773.1 33538415 43.48% 2758338
NC_041774.1 27117960 17.68% 2289718
NW_021160097.1 260 0.70% 21
NW_021160098.1 1390 3.48% 126
NW_021160099.1 910 2.25% 81
NW_021160102.1 2290 4.56% 198
NW_021160105.1 1550 2.83% 138
NW_021160106.1 5250 9.45% 440
NW_021160107.1 880 1.58% 81
NW_021160109.1 6060 7.36% 506
NW_021160110.1 12890 10.91% 1093
NW_021160111.1 11430 8.59% 1017
NW_021160113.1 44030 37.85% 3764
NW_021160114.1 8530 12.94% 734
NW_021160116.1 600 1.70% 56
NW_021160121.1 1590 1.84% 145
NW_021160122.1 5600 6.08% 495
NW_021160123.1 3450 6.52% 293
NW_021160125.1 250 0.99% 22
NW_021160136.1 3750 6.28% 327
NW_021160140.1 4830 3.71% 422
NW_021160141.1 6730 5.02% 582
NW_021160142.1 15410 32.23% 1260
NW_021160144.1 52150 4.24% 4882
NW_021160145.1 1220 4.54% 110
NW_021160147.1 2050 6.82% 183
NW_021160148.1 4360 12.70% 361
NW_021160150.1 2670 7.12% 245
NW_021160155.1 3160 5.79% 266
NW_021160158.1 2550 3.38% 228
NW_021160159.1 3700 4.31% 339
NW_021160161.1 59602 8.07% 5045
NW_021160167.1 570 1.51% 48
NW_021160168.1 420 1.01% 36
NW_021160175.1 28700 15.50% 2444
NW_021160179.1 990 2.55% 83
NW_021160182.1 6560 11.29% 556
NW_021160184.1 1180 1.92% 111
NW_021160185.1 1510 2.43% 136
NW_021160186.1 8870 13.75% 756
NW_021160187.1 1590 2.08% 148
NW_021160188.1 4010 4.83% 336
NW_021160189.1 3090 3.05% 261
NW_021160190.1 3070 8.59% 238
NW_021160191.1 2250 8.08% 194
NW_021160193.1 40 0.13% 4
NW_021160196.1 9180 19.91% 760
NW_021160197.1 4320 8.34% 373
NW_021160199.1 1580 2.83% 147
NW_021160200.1 2630 4.46% 234
NW_021160201.1 6830 11.12% 571
NW_021160202.1 3620 5.53% 305
NW_021160203.1 6460 8.95% 547
NW_021160204.1 5550 7.62% 483
NW_021160205.1 1750 2.39% 160
NW_021160206.1 5240 6.26% 455
NW_021160207.1 5190 5.25% 448
NW_021160209.1 13480 2.01% 1158
NW_021160211.1 4190 3.14% 365
NW_021160220.1 9290 13.92% 757
NW_021160221.1 3310 4.67% 299
NW_021160222.1 890 1.17% 84
NW_021160223.1 11260 13.52% 938
NW_021160225.1 4090 7.60% 365
NW_021160226.1 4280 11.88% 345
NW_021160228.1 2560 5.35% 211
NW_021160229.1 1840 3.83% 171
NW_021160231.1 1940 3.56% 171
NW_021160233.1 3930 6.08% 325
NW_021160234.1 16270 24.82% 1387
NW_021160236.1 4380 5.63% 382
NW_021160237.1 10980 12.81% 947
NW_021160238.1 10550 10.10% 891
NW_021160239.1 1550 5.32% 142
NW_021160242.1 1840 6.23% 165
NW_021160243.1 530 1.68% 49
NW_021160244.1 18990 53.92% 1624
NW_021160245.1 2100 4.80% 185
NW_021160248.1 1650 2.21% 153
NW_021160249.1 4860 6.42% 422
NW_021160250.1 830 1.29% 75
NW_021160251.1 6170 7.31% 518
NW_021160252.1 13200 14.89% 1077
NW_021160255.1 2480 8.83% 218
NW_021160263.1 950 1.81% 87
NW_021160266.1 1430 1.91% 135
NW_021160268.1 2130 3.15% 198
NW_021160270.1 3700 10.62% 305
NW_021160271.1 1580 4.55% 136
NW_021160272.1 3610 10.32% 298
NW_021160273.1 1300 3.23% 113
NW_021160277.1 550 1.23% 53
NW_021160278.1 4740 8.52% 407
NW_021160279.1 5790 8.77% 491
NW_021160282.1 13100 10.59% 1072
NW_021160284.1 1280 3.68% 116
NW_021160285.1 2790 6.25% 247
NW_021160291.1 360 0.80% 36
NW_021160293.1 6420 12.15% 526
NW_021160294.1 7120 8.94% 611
NW_021160295.1 3240 3.93% 291
NW_021160297.1 5420 9.64% 454
NW_021160298.1 1630 5.98% 144
NW_021160300.1 7940 12.75% 683
NW_021160305.1 960 2.38% 84
NW_021160306.1 2840 7.20% 249
NW_021160307.1 5440 10.33% 475
NW_021160308.1 2510 4.65% 218
NW_021160310.1 14630 25.11% 1193
NW_021160311.1 12900 16.38% 1079
NW_021160312.1 9910 11.21% 873
NW_021160313.1 12390 13.09% 1048
NW_021160319.1 3070 7.07% 259
NW_021160320.1 3820 7.27% 325
NW_021160324.1 4280 6.73% 374
NW_021160325.1 3020 4.64% 255
NW_021160326.1 2990 4.59% 263
NW_021160327.1 6000 9.09% 510
NW_021160328.1 12290 19.41% 1062
NW_021160329.1 4970 9.25% 410
NW_021160338.1 830 2.21% 75
NW_021160339.1 290 0.75% 28
NW_021160341.1 4080 8.81% 337
NW_021160347.1 14440 8.74% 1241
NW_021160353.1 5440 13.21% 446
NW_021160354.1 2010 4.79% 172
NW_021160355.1 2370 4.27% 210
NW_021160356.1 1750 2.29% 161
NW_021160357.1 780 2.56% 66
NW_021160358.1 3920 9.94% 345
NW_021160359.1 5340 13.01% 432
NW_021160361.1 1130 2.40% 101
NW_021160362.1 1830 3.41% 161
NW_021160363.1 5440 8.93% 463
NW_021160364.1 5180 8.38% 427
NW_021160365.1 5140 7.74% 436
NW_021160366.1 5750 8.07% 479
NW_021160367.1 12960 16.97% 1083
NW_021160368.1 980 1.24% 94
NW_021160369.1 1850 2.26% 166
NW_021160370.1 9960 11.13% 813
NW_021160371.1 1810 2.00% 170
NW_021160372.1 13120 9.76% 1110
NW_021160373.1 10870 18.69% 893
NW_021160374.1 5870 4.72% 529
NW_021160375.1 12980 7.06% 1134
NW_021160376.1 66640 7.72% 5720
NW_021160381.1 400 0.82% 33
NW_021160383.1 17730 25.70% 1460
NW_021160384.1 1500 1.88% 138
NW_021160401.1 350 2.15% 33
NW_021160410.1 6370 38.71% 556
NW_021160417.1 1040 1.84% 87
NW_021160452.1 1210 7.15% 106
NW_021160482.1 170 0.98% 15
NW_021160484.1 1380 7.93% 121
NW_021160495.1 37830 4.59% 3398
NW_021160514.1 1470 8.16% 126
NW_021160523.1 810 4.48% 66
NW_021160525.1 850 4.69% 84
NW_021160535.1 1090 5.95% 95
NW_021160549.1 2050 11.04% 174
NW_021160573.1 2560 13.45% 211
NW_021160589.1 20 0.10% 2
NW_021160606.1 27990 2.78% 2507
NW_021160623.1 670 3.39% 53
NW_021160625.1 50 0.25% 5
NW_021160629.1 150 0.75% 12
NW_021160635.1 330 1.64% 31
NW_021160655.1 1420 6.90% 128
NW_021160656.1 530 2.59% 52
NW_021160678.1 530 2.55% 48
NW_021160682.1 7970 38.46% 650
NW_021160688.1 3750 18.37% 316
NW_021160701.1 3880 18.29% 321
NW_021160725.1 220 1.02% 21
NW_021160726.1 11290 51.91% 994
NW_021160734.1 340 1.56% 28
NW_021160757.1 50 0.23% 5
NW_021160770.1 10110 44.67% 898
NW_021160772.1 1170 5.16% 95
NW_021160805.1 3350 14.29% 279
NW_021160821.1 270 1.13% 23
NW_021160827.1 28270 3.85% 2286
NW_021160832.1 170 0.71% 17
NW_021160834.1 1000 4.15% 91
NW_021160848.1 90 0.37% 9
NW_021160868.1 30 0.12% 3
NW_021160890.1 1660 6.58% 146
NW_021160903.1 2880 10.87% 241
NW_021160919.1 840 3.22% 72
NW_021160925.1 80 0.31% 8
NW_021160946.1 2530 9.56% 213
NW_021160955.1 1130 4.26% 102
NW_021160961.1 670 2.50% 65
NW_021160976.1 4540 16.68% 381
NW_021160983.1 70 0.26% 6
NW_021160986.1 20 0.07% 2
NW_021161026.1 40 0.14% 4
NW_021161033.1 100 0.35% 10
NW_021161038.1 2140 7.91% 185
NW_021161041.1 520 1.82% 48
NW_021161043.1 130 0.45% 13
NW_021161046.1 2660 9.02% 230
NW_021161062.1 580 1.96% 50
NW_021161066.1 4340 14.55% 363
NW_021161106.1 1450 4.73% 126
NW_021161107.1 420 1.37% 40
NW_021161113.1 3650 10.82% 325
NW_021161114.1 3300 10.70% 281
NW_021161131.1 20 0.06% 2
NW_021161133.1 2340 1.57% 212
NW_021161138.1 80 0.26% 7
NW_021161152.1 2340 7.44% 198
NW_021161164.1 1540 4.76% 131
NW_021161166.1 2930 9.02% 261
NW_021161184.1 290 0.98% 27
NW_021161201.1 1090 3.28% 91
NW_021161211.1 1970 5.90% 183
NW_021161213.1 190 0.57% 19
NW_021161224.1 3880 11.51% 322
NW_021161226.1 1720 5.16% 142
NW_021161241.1 170 0.50% 16
NW_021161253.1 80 0.23% 8
NW_021161261.1 1180 3.38% 104
NW_021161269.1 4360 12.42% 377
NW_021161282.1 10530 27.09% 878
NW_021161303.1 350 0.97% 35
NW_021161305.1 160 0.44% 16
NW_021161307.1 680 2.56% 58
NW_021161312.1 160 0.45% 11
NW_021161320.1 2660 2.71% 234
NW_021161336.1 2260 6.13% 197
NW_021161338.1 340 0.91% 31
NW_021161340.1 1660 4.52% 143
NW_021161348.1 3210 8.57% 257
NW_021161355.1 2250 5.82% 194
NW_021161360.1 360 0.96% 30
NW_021161364.1 1680 4.40% 138
NW_021161377.1 7670 19.29% 635
NW_021161379.1 150 0.39% 15
NW_021161380.1 40 0.13% 4
NW_021161385.1 290 0.75% 25
NW_021161392.1 5590 14.29% 489
NW_021161394.1 2100 5.41% 174
NW_021161396.1 80 0.20% 6
NW_021161399.1 2200 10.04% 177
NW_021161404.1 820 2.08% 73
NW_021161413.1 2020 5.10% 183
NW_021161421.1 150 0.38% 13
NW_021161422.1 360 0.91% 29
NW_021161427.1 1370 3.42% 121
NW_021161433.1 240 0.59% 21
NW_021161437.1 370 1.23% 36
NW_021161446.1 800 1.96% 76
NW_021161468.1 550 1.31% 55
NW_021161470.1 200 0.48% 17
NW_021161486.1 2000 4.70% 163
NW_021161494.1 220 0.51% 22
NW_021161497.1 330 0.77% 31
NW_021161505.1 3830 8.89% 315
NW_021161507.1 3500 8.09% 296
NW_021161508.1 7830 18.14% 634
NW_021161519.1 1650 3.76% 148
NW_021161520.1 3690 8.56% 341
NW_021161523.1 1710 3.95% 152
NW_021161525.1 6270 14.24% 509
NW_021161526.1 3330 7.56% 292
NW_021161532.1 260 0.58% 25
NW_021161535.1 430 0.96% 40
NW_021161537.1 7030 15.85% 602
NW_021161545.1 7630 17.08% 628
NW_021161552.1 310 0.73% 29
NW_021161554.1 1810 4.01% 162
NW_021161561.1 3830 8.48% 320
NW_021161562.1 4280 9.41% 356
NW_021161567.1 1240 2.72% 107
NW_021161570.1 80 0.18% 7
NW_021161582.1 5250 11.43% 443
NW_021161585.1 7530 16.34% 627
NW_021161590.1 9860 21.43% 807
NW_021161593.1 7450 16.01% 608
NW_021161596.1 24280 4.50% 2066
NW_021161601.1 1380 2.93% 119
NW_021161608.1 620 1.33% 58
NW_021161609.1 260 0.55% 24
NW_021161614.1 1710 3.58% 154
NW_021161616.1 3840 8.03% 344
NW_021161617.1 110 0.23% 11
NW_021161627.1 2980 8.91% 234
NW_021161633.1 15960 32.30% 1331
NW_021161642.1 1320 2.65% 118
NW_021161648.1 14040 27.59% 1172
NW_021161679.1 2420 4.64% 205
NW_021161680.1 1260 2.44% 108
NW_021161686.1 9420 6.96% 809
NW_021161694.1 730 1.60% 65
NW_021161695.1 1240 2.32% 113
NW_021161696.1 970 1.83% 88
NW_021161699.1 3020 6.25% 264
NW_021161700.1 130 0.25% 13
NW_021161713.1 440 0.82% 43
NW_021161715.1 130 0.24% 13
NW_021161718.1 8620 15.82% 706
NW_021161725.1 1740 5.53% 154
NW_021161737.1 2530 4.53% 223
NW_021161743.1 690 1.23% 58
NW_021161747.1 410 0.73% 37
NW_021161754.1 12930 22.61% 1069
NW_021161759.1 390 0.68% 31
NW_021161767.1 4450 4.36% 392
NW_021161769.1 1970 3.40% 162
NW_021161772.1 2800 3.79% 242
NW_021161784.1 660 12.82% 57
NW_021161790.1 10550 17.48% 869
NW_021161794.1 710 1.17% 65
NW_021161796.1 1080 1.79% 102
NW_021161798.1 1680 3.57% 133
NW_021161830.1 2710 6.06% 244
NW_021161832.1 760 1.20% 67
NW_021161839.1 890 1.39% 80
NW_021161842.1 1730 2.65% 164
NW_021161843.1 1090 1.67% 99
NW_021161845.1 10530 16.10% 888
NW_021161850.1 139301 12.47% 11943
NW_021161853.1 6000 9.09% 484
NW_021161857.1 1620 2.44% 149
NW_021161862.1 1980 2.99% 172
NW_021161876.1 5080 7.44% 452
NW_021161878.1 3720 5.47% 310
NW_021161881.1 8070 13.40% 661
NW_021161888.1 6200 8.93% 501
NW_021161902.1 5750 8.87% 486
NW_021161927.1 2620 3.50% 225
NW_021161934.1 3310 4.39% 297
NW_021161939.1 9350 12.34% 810
NW_021161954.1 2460 3.19% 216
NW_021161955.1 4570 5.90% 390
NW_021161956.1 8700 11.39% 708
NW_021161958.1 7620 9.70% 652
NW_021161961.1 4870 6.23% 416
NW_021161962.1 390 0.49% 36
NW_021161965.1 2470 3.12% 229
NW_021161996.1 2710 3.15% 226
NW_021162004.1 690 2.43% 54
NW_021162007.1 1800 2.05% 162
NW_021162009.1 24940 28.61% 2070
NW_021162025.1 2140 2.40% 197
NW_021162035.1 1790 1.92% 166
NW_021162047.1 2230 2.33% 209
NW_021162055.1 5330 5.36% 456
NW_021162083.1 6740 3.91% 613
NW_021162091.1 8110 7.15% 681
NW_021162100.1 9160 7.29% 783
NW_021162108.1 10780 33.82% 850
NW_021162157.1 740 1.23% 69
NW_021162185.1 20 0.23% 2
NW_021162208.1 990 0.40% 95
NW_021162222.1 2010 5.31% 184
NW_021162226.1 610 1.40% 58
NW_021162246.1 21290 20.15% 1752
NW_021162251.1 15910 22.28% 1287
NW_021162253.1 130 0.42% 11
NW_021162263.1 460 1.74% 39
NW_021162265.1 7880 20.39% 633
NW_021162274.1 30390 29.93% 2502
NW_021162277.1 2070 8.32% 171
NW_021162460.1 20 0.27% 2
NW_021162463.1 280 3.71% 25
NW_021162495.1 280 4.25% 24
NW_021162553.1 300 3.46% 21
NW_021162593.1 30 0.32% 3
NW_021162599.1 2660 28.37% 216
NW_021162621.1 560 5.73% 48
NW_021162643.1 4050 15.94% 338
NW_021162814.1 190 1.53% 19
NW_021162871.1 590 4.25% 49
NW_021162949.1 40 0.27% 3
NW_021163002.1 20 0.13% 2
2539 contigs with no values (90310708 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 80979854 1 150 12.14 10
global segment-length histogram

Files

Filename Size md5
LAMP5-CXCL14_GABA.bw 546.03 MB 4d04e6925b3c80d4d1db4df166db33f7
genomic_resource.yaml 1.13 KB 0ea83729338070d14f1f4468eb306311
statistics/