Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/LAMP5-LHX6_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for LAMP5-LHX6_GABA cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: LAMP5-LHX6_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_LAMP5-LHX6_GABA float

johansen2025Crossspecies_atac_macaque_LAMP5-LHX6_GABA

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_LAMP5-LHX6_GABA [0.132, 49.5]
n
829,922,799
mean
0.26
sd
0.396

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 82992279927.93% 68306284
NC_005943.1 1670 10.08% 161
NC_027914.1 767770 6.53% 67919
NC_041754.1 72792120 32.55% 5964878
NC_041755.1 55166810 28.12% 4546252
NC_041756.1 54686700 29.51% 4495381
NC_041757.1 44928330 26.43% 3711715
NC_041758.1 42055960 22.45% 3508650
NC_041759.1 47932300 26.77% 3958341
NC_041760.1 53203310 31.32% 4362587
NC_041761.1 39713460 27.26% 3274691
NC_041762.1 40446510 30.16% 3314871
NC_041763.1 39193520 39.38% 3190873
NC_041764.1 41398640 31.11% 3396737
NC_041765.1 36441760 28.02% 2998706
NC_041766.1 32798650 30.16% 2691079
NC_041767.1 41522670 32.43% 3407542
NC_041768.1 34889420 30.80% 2869279
NC_041769.1 32027110 40.22% 2612938
NC_041770.1 24017710 25.17% 1986357
NC_041771.1 20440800 27.45% 1683574
NC_041772.1 22843290 39.17% 1878734
NC_041773.1 28830980 37.38% 2351072
NC_041774.1 22233180 14.49% 1897016
NW_021160097.1 340 0.92% 32
NW_021160098.1 1220 3.05% 107
NW_021160099.1 970 2.40% 88
NW_021160102.1 1780 3.55% 157
NW_021160105.1 1120 2.04% 106
NW_021160106.1 3530 6.36% 301
NW_021160107.1 1010 1.82% 90
NW_021160109.1 5190 6.31% 462
NW_021160110.1 10660 9.02% 928
NW_021160111.1 13050 9.81% 1127
NW_021160113.1 39770 34.19% 3389
NW_021160114.1 6920 10.50% 562
NW_021160116.1 630 1.78% 58
NW_021160121.1 1100 1.28% 99
NW_021160122.1 6930 7.53% 600
NW_021160123.1 2890 5.46% 260
NW_021160125.1 290 1.15% 26
NW_021160136.1 2960 4.95% 256
NW_021160140.1 4360 3.35% 390
NW_021160141.1 7510 5.60% 657
NW_021160142.1 14540 30.41% 1154
NW_021160144.1 45409 3.69% 4303
NW_021160145.1 1100 4.09% 95
NW_021160147.1 1390 4.63% 126
NW_021160148.1 3530 10.29% 298
NW_021160150.1 2480 6.61% 221
NW_021160155.1 2110 3.87% 192
NW_021160158.1 1910 2.53% 176
NW_021160159.1 2560 2.98% 242
NW_021160161.1 47680 6.46% 4078
NW_021160167.1 740 1.96% 69
NW_021160168.1 310 0.74% 29
NW_021160175.1 22860 12.35% 1990
NW_021160179.1 1040 2.68% 98
NW_021160182.1 6190 10.66% 512
NW_021160184.1 1170 1.91% 105
NW_021160185.1 1410 2.27% 126
NW_021160186.1 7390 11.46% 625
NW_021160187.1 1310 1.71% 123
NW_021160188.1 3330 4.01% 292
NW_021160189.1 3720 3.67% 318
NW_021160190.1 2180 6.10% 191
NW_021160191.1 1870 6.71% 163
NW_021160193.1 20 0.06% 2
NW_021160196.1 8685 18.84% 699
NW_021160197.1 3640 7.03% 317
NW_021160199.1 1720 3.08% 162
NW_021160200.1 2500 4.24% 224
NW_021160201.1 5540 9.02% 464
NW_021160202.1 1990 3.04% 180
NW_021160203.1 6700 9.28% 584
NW_021160204.1 4830 6.63% 419
NW_021160205.1 1250 1.71% 122
NW_021160206.1 3280 3.92% 281
NW_021160207.1 6110 6.18% 529
NW_021160209.1 12120 1.81% 1053
NW_021160211.1 3530 2.65% 306
NW_021160220.1 7880 11.81% 649
NW_021160221.1 2230 3.15% 210
NW_021160222.1 860 1.13% 75
NW_021160223.1 9130 10.96% 762
NW_021160225.1 4830 8.97% 425
NW_021160226.1 3600 9.99% 294
NW_021160228.1 1700 3.55% 146
NW_021160229.1 1800 3.75% 168
NW_021160231.1 1560 2.86% 144
NW_021160233.1 3070 4.75% 258
NW_021160234.1 13790 21.04% 1144
NW_021160236.1 3260 4.19% 291
NW_021160237.1 6290 7.34% 562
NW_021160238.1 7740 7.41% 670
NW_021160239.1 1190 4.08% 104
NW_021160242.1 1410 4.77% 124
NW_021160243.1 340 1.08% 29
NW_021160244.1 17310 49.15% 1438
NW_021160245.1 1810 4.14% 157
NW_021160248.1 1360 1.82% 125
NW_021160249.1 3580 4.73% 316
NW_021160250.1 590 0.92% 51
NW_021160251.1 5310 6.29% 463
NW_021160252.1 10210 11.52% 873
NW_021160255.1 1890 6.73% 163
NW_021160263.1 690 1.31% 65
NW_021160266.1 2770 3.69% 253
NW_021160268.1 4750 7.01% 402
NW_021160270.1 2890 8.30% 249
NW_021160271.1 1270 3.65% 116
NW_021160272.1 3190 9.12% 258
NW_021160273.1 670 1.67% 64
NW_021160277.1 340 0.76% 30
NW_021160278.1 5090 9.15% 436
NW_021160279.1 4490 6.80% 392
NW_021160282.1 9780 7.91% 843
NW_021160284.1 880 2.53% 79
NW_021160285.1 2060 4.62% 176
NW_021160291.1 480 1.06% 45
NW_021160293.1 5220 9.88% 445
NW_021160294.1 6810 8.55% 568
NW_021160295.1 2480 3.00% 233
NW_021160297.1 4380 7.79% 371
NW_021160298.1 1340 4.92% 117
NW_021160300.1 7340 11.79% 610
NW_021160305.1 430 1.07% 41
NW_021160306.1 2270 5.75% 194
NW_021160307.1 5530 10.50% 473
NW_021160308.1 2190 4.06% 198
NW_021160310.1 13090 22.47% 1076
NW_021160311.1 9570 12.15% 804
NW_021160312.1 7960 9.00% 681
NW_021160313.1 11260 11.90% 932
NW_021160319.1 1840 4.24% 172
NW_021160320.1 3030 5.77% 265
NW_021160324.1 3880 6.10% 338
NW_021160325.1 2650 4.07% 245
NW_021160326.1 2270 3.48% 196
NW_021160327.1 4689 7.11% 405
NW_021160328.1 10800 17.05% 898
NW_021160329.1 3670 6.83% 309
NW_021160338.1 670 1.79% 62
NW_021160339.1 210 0.54% 21
NW_021160341.1 3510 7.58% 316
NW_021160347.1 10080 6.10% 870
NW_021160353.1 4140 10.05% 332
NW_021160354.1 1350 3.22% 116
NW_021160355.1 1780 3.20% 163
NW_021160356.1 1570 2.06% 141
NW_021160357.1 620 2.04% 54
NW_021160358.1 3340 8.47% 290
NW_021160359.1 3380 8.23% 278
NW_021160361.1 1010 2.15% 92
NW_021160362.1 1250 2.33% 117
NW_021160363.1 4510 7.40% 393
NW_021160364.1 3710 6.00% 323
NW_021160365.1 4760 7.17% 411
NW_021160366.1 5300 7.44% 459
NW_021160367.1 10480 13.72% 881
NW_021160368.1 870 1.10% 82
NW_021160369.1 1180 1.44% 111
NW_021160370.1 7020 7.84% 604
NW_021160371.1 1260 1.39% 119
NW_021160372.1 11300 8.41% 972
NW_021160373.1 9530 16.39% 796
NW_021160374.1 4610 3.71% 418
NW_021160375.1 9790 5.33% 865
NW_021160376.1 51250 5.94% 4517
NW_021160381.1 450 0.92% 39
NW_021160383.1 17237 24.98% 1395
NW_021160384.1 1060 1.33% 102
NW_021160401.1 150 0.92% 14
NW_021160410.1 6670 40.53% 568
NW_021160417.1 750 1.32% 67
NW_021160452.1 1180 6.97% 98
NW_021160482.1 40 0.23% 4
NW_021160484.1 1220 7.01% 105
NW_021160495.1 20270 2.46% 1856
NW_021160514.1 1030 5.72% 86
NW_021160523.1 630 3.48% 49
NW_021160525.1 600 3.31% 54
NW_021160535.1 810 4.42% 70
NW_021160549.1 1420 7.65% 117
NW_021160573.1 2580 13.55% 216
NW_021160589.1 120 0.62% 11
NW_021160606.1 23880 2.37% 2165
NW_021160623.1 1320 6.67% 109
NW_021160625.1 40 0.20% 4
NW_021160629.1 160 0.80% 15
NW_021160635.1 180 0.90% 16
NW_021160655.1 1290 6.27% 111
NW_021160656.1 800 3.91% 70
NW_021160678.1 230 1.11% 23
NW_021160682.1 6825 32.93% 557
NW_021160688.1 2290 11.22% 194
NW_021160701.1 3950 18.62% 340
NW_021160725.1 290 1.34% 26
NW_021160726.1 11090 50.99% 988
NW_021160734.1 170 0.78% 17
NW_021160757.1 20 0.09% 2
NW_021160770.1 10070 44.49% 896
NW_021160772.1 1070 4.72% 87
NW_021160805.1 2750 11.73% 233
NW_021160821.1 80 0.33% 8
NW_021160827.1 33530 4.57% 2827
NW_021160832.1 100 0.42% 10
NW_021160834.1 790 3.28% 74
NW_021160848.1 80 0.33% 8
NW_021160868.1 20 0.08% 2
NW_021160890.1 1420 5.62% 125
NW_021160903.1 2800 10.57% 241
NW_021160919.1 880 3.38% 77
NW_021160925.1 180 0.69% 18
NW_021160946.1 1710 6.46% 153
NW_021160955.1 1550 5.84% 133
NW_021160961.1 630 2.35% 59
NW_021160976.1 6530 23.99% 517
NW_021160983.1 50 0.18% 5
NW_021160986.1 20 0.07% 2
NW_021161026.1 20 0.07% 2
NW_021161033.1 100 0.35% 10
NW_021161038.1 1960 7.24% 169
NW_021161041.1 360 1.26% 35
NW_021161043.1 40 0.14% 4
NW_021161046.1 2450 8.30% 200
NW_021161062.1 1240 4.19% 101
NW_021161066.1 4030 13.51% 343
NW_021161106.1 1360 4.44% 124
NW_021161107.1 270 0.88% 24
NW_021161113.1 2060 6.11% 183
NW_021161114.1 3490 11.31% 308
NW_021161133.1 2000 1.35% 176
NW_021161138.1 220 0.71% 19
NW_021161152.1 2370 7.53% 189
NW_021161164.1 1710 5.29% 139
NW_021161166.1 2250 6.92% 200
NW_021161184.1 590 2.00% 48
NW_021161201.1 1110 3.34% 86
NW_021161211.1 2470 7.40% 223
NW_021161213.1 160 0.48% 16
NW_021161224.1 3640 10.80% 306
NW_021161226.1 1860 5.58% 148
NW_021161241.1 120 0.35% 12
NW_021161253.1 80 0.23% 7
NW_021161261.1 2320 6.64% 195
NW_021161269.1 3660 10.43% 321
NW_021161282.1 9630 24.77% 785
NW_021161303.1 310 0.86% 29
NW_021161305.1 310 0.86% 29
NW_021161307.1 730 2.75% 64
NW_021161312.1 140 0.39% 9
NW_021161320.1 2440 2.48% 225
NW_021161336.1 1350 3.66% 122
NW_021161338.1 330 0.89% 32
NW_021161340.1 850 2.31% 76
NW_021161348.1 2460 6.57% 202
NW_021161355.1 2970 7.69% 263
NW_021161360.1 220 0.59% 22
NW_021161364.1 1350 3.54% 113
NW_021161377.1 5490 13.81% 462
NW_021161379.1 80 0.21% 7
NW_021161385.1 420 1.08% 32
NW_021161392.1 4580 11.71% 412
NW_021161394.1 1960 5.05% 159
NW_021161396.1 40 0.10% 4
NW_021161399.1 1470 6.71% 128
NW_021161404.1 1720 4.36% 150
NW_021161413.1 3800 9.59% 320
NW_021161421.1 120 0.30% 10
NW_021161422.1 190 0.48% 16
NW_021161427.1 810 2.02% 75
NW_021161433.1 100 0.25% 10
NW_021161437.1 360 1.20% 34
NW_021161446.1 440 1.08% 44
NW_021161463.1 40 0.10% 4
NW_021161468.1 220 0.52% 22
NW_021161470.1 160 0.38% 15
NW_021161483.1 20 0.05% 2
NW_021161486.1 1570 3.69% 142
NW_021161494.1 180 0.42% 17
NW_021161497.1 240 0.56% 22
NW_021161505.1 2460 5.71% 211
NW_021161507.1 2250 5.20% 196
NW_021161508.1 6980 16.17% 577
NW_021161519.1 2370 5.40% 211
NW_021161520.1 3560 8.26% 321
NW_021161523.1 2590 5.99% 227
NW_021161525.1 4380 9.95% 368
NW_021161526.1 2840 6.45% 248
NW_021161532.1 130 0.29% 12
NW_021161535.1 300 0.67% 27
NW_021161537.1 5740 12.94% 484
NW_021161545.1 6560 14.68% 546
NW_021161552.1 270 0.63% 26
NW_021161554.1 1820 4.03% 165
NW_021161561.1 4080 9.03% 339
NW_021161562.1 4340 9.54% 339
NW_021161567.1 1230 2.70% 108
NW_021161570.1 60 0.13% 5
NW_021161582.1 3690 8.03% 322
NW_021161585.1 6340 13.76% 539
NW_021161590.1 8310 18.06% 666
NW_021161593.1 6060 13.02% 511
NW_021161596.1 27990 5.19% 2364
NW_021161601.1 1040 2.21% 94
NW_021161608.1 790 1.69% 72
NW_021161609.1 260 0.55% 26
NW_021161614.1 1760 3.69% 162
NW_021161616.1 3550 7.42% 319
NW_021161617.1 100 0.21% 10
NW_021161627.1 2300 6.88% 196
NW_021161633.1 14860 30.07% 1221
NW_021161642.1 860 1.73% 80
NW_021161648.1 12030 23.64% 994
NW_021161679.1 2480 4.76% 221
NW_021161680.1 1220 2.36% 105
NW_021161686.1 9170 6.78% 788
NW_021161694.1 460 1.01% 42
NW_021161695.1 1080 2.02% 102
NW_021161696.1 1000 1.89% 92
NW_021161699.1 5954 12.31% 493
NW_021161700.1 120 0.23% 12
NW_021161713.1 800 1.48% 69
NW_021161715.1 70 0.13% 6
NW_021161718.1 10830 19.88% 888
NW_021161725.1 1750 5.56% 155
NW_021161737.1 1870 3.35% 169
NW_021161743.1 510 0.91% 45
NW_021161747.1 290 0.51% 25
NW_021161754.1 11240 19.65% 941
NW_021161759.1 270 0.47% 27
NW_021161767.1 4020 3.94% 350
NW_021161769.1 2130 3.67% 184
NW_021161772.1 4490 6.07% 383
NW_021161784.1 640 12.43% 49
NW_021161790.1 8920 14.78% 737
NW_021161794.1 800 1.32% 72
NW_021161796.1 2220 3.67% 198
NW_021161798.1 1210 2.57% 102
NW_021161830.1 2000 4.47% 184
NW_021161832.1 800 1.26% 70
NW_021161839.1 930 1.45% 85
NW_021161842.1 2070 3.17% 194
NW_021161843.1 1400 2.15% 132
NW_021161845.1 9920 15.17% 804
NW_021161850.1 87130 7.80% 7740
NW_021161853.1 5550 8.41% 471
NW_021161857.1 960 1.45% 89
NW_021161862.1 4390 6.63% 368
NW_021161876.1 3950 5.79% 369
NW_021161878.1 2260 3.32% 201
NW_021161881.1 7160 11.89% 591
NW_021161888.1 6850 9.87% 569
NW_021161902.1 4170 6.43% 339
NW_021161927.1 4280 5.72% 356
NW_021161934.1 2470 3.28% 217
NW_021161939.1 8120 10.72% 680
NW_021161954.1 2100 2.72% 187
NW_021161955.1 3440 4.44% 294
NW_021161956.1 8140 10.66% 694
NW_021161958.1 5250 6.69% 472
NW_021161961.1 7640 9.77% 634
NW_021161962.1 410 0.51% 40
NW_021161965.1 1810 2.29% 157
NW_021161996.1 4900 5.70% 407
NW_021162004.1 530 1.87% 48
NW_021162007.1 1390 1.58% 135
NW_021162009.1 21980 25.21% 1839
NW_021162025.1 2700 3.03% 229
NW_021162035.1 4440 4.76% 396
NW_021162047.1 2280 2.38% 208
NW_021162055.1 4880 4.90% 413
NW_021162083.1 6590 3.82% 595
NW_021162091.1 7940 7.00% 635
NW_021162100.1 8620 6.86% 752
NW_021162108.1 8890 27.89% 716
NW_021162157.1 560 0.93% 52
NW_021162208.1 680 0.27% 66
NW_021162222.1 1570 4.15% 147
NW_021162226.1 600 1.37% 57
NW_021162246.1 15690 14.85% 1337
NW_021162251.1 11600 16.24% 981
NW_021162253.1 80 0.26% 8
NW_021162263.1 500 1.89% 45
NW_021162265.1 12150 31.44% 982
NW_021162274.1 24650 24.28% 2038
NW_021162277.1 1770 7.12% 153
NW_021162463.1 250 3.31% 23
NW_021162495.1 240 3.64% 21
NW_021162553.1 410 4.73% 34
NW_021162593.1 80 0.86% 8
NW_021162599.1 2820 30.08% 225
NW_021162621.1 250 2.56% 23
NW_021162643.1 6040 23.77% 529
NW_021162814.1 260 2.10% 19
NW_021162871.1 410 2.95% 33
NW_021163002.1 40 0.25% 4
2542 contigs with no values (90321111 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 68306284 4 150 12.15 10
global segment-length histogram

Files

Filename Size md5
LAMP5-LHX6_GABA.bw 488.74 MB 73b95b0b6a3b1e5cd13c895508fa7c67
genomic_resource.yaml 1.12 KB ce1202f4ef7a05a513f6d15cd53d8124
statistics/