Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/Microglia/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for Microglia cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: Microglia
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_Microglia float

johansen2025Crossspecies_atac_macaque_Microglia

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_Microglia [0.00842, 90.6]
n
1,902,018,804
mean
0.0547
sd
0.308

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 190201880464.01% 160897644
NC_005943.1 2610 15.76% 255
NC_027914.1 4901560 41.70% 393728
NC_041754.1 153491280 68.64% 13075923
NC_041755.1 131364280 66.95% 11058218
NC_041756.1 126125180 68.07% 10647076
NC_041757.1 114604310 67.43% 9677998
NC_041758.1 122695710 65.50% 10240181
NC_041759.1 118110780 65.95% 9910521
NC_041760.1 115402530 67.94% 9786514
NC_041761.1 96600580 66.31% 8108181
NC_041762.1 88073260 65.67% 7451315
NC_041763.1 67404760 67.73% 5797203
NC_041764.1 90312970 67.87% 7679086
NC_041765.1 86727430 66.69% 7281175
NC_041766.1 73551010 67.64% 6221368
NC_041767.1 88279410 68.94% 7533887
NC_041768.1 76528200 67.55% 6487173
NC_041769.1 57516904 72.23% 5029343
NC_041770.1 63244070 66.27% 5308314
NC_041771.1 50137270 67.32% 4214320
NC_041772.1 41827960 71.73% 3702466
NC_041773.1 54540015 70.70% 4693424
NC_041774.1 74752300 48.73% 6111043
NW_021160097.1 490 1.32% 44
NW_021160098.1 4320 10.80% 385
NW_021160099.1 1330 3.29% 116
NW_021160102.1 6180 12.31% 510
NW_021160105.1 3990 7.27% 338
NW_021160106.1 11110 20.00% 910
NW_021160107.1 3150 5.67% 280
NW_021160109.1 21160 25.71% 1829
NW_021160110.1 24970 21.14% 2149
NW_021160111.1 37515 28.20% 3027
NW_021160113.1 66910 57.52% 5865
NW_021160114.1 16110 24.44% 1367
NW_021160116.1 7980 22.55% 675
NW_021160121.1 9720 11.28% 829
NW_021160122.1 25640 27.86% 2148
NW_021160123.1 6380 12.05% 534
NW_021160125.1 820 3.24% 71
NW_021160136.1 4250 7.11% 370
NW_021160140.1 12170 9.34% 1048
NW_021160141.1 42190 31.45% 3611
NW_021160142.1 28810 60.25% 2543
NW_021160144.1 774969 63.01% 63557
NW_021160145.1 2660 9.90% 218
NW_021160147.1 6230 20.74% 532
NW_021160148.1 7330 21.36% 606
NW_021160150.1 5500 14.67% 480
NW_021160155.1 13560 24.87% 1218
NW_021160158.1 12450 16.52% 1031
NW_021160159.1 33540 39.09% 2806
NW_021160161.1 211442 28.64% 17902
NW_021160167.1 1570 4.15% 132
NW_021160168.1 1560 3.75% 134
NW_021160175.1 98750 53.34% 8150
NW_021160179.1 8480 21.81% 713
NW_021160182.1 6560 11.29% 553
NW_021160184.1 4740 7.73% 408
NW_021160185.1 9630 15.50% 840
NW_021160186.1 19250 29.85% 1626
NW_021160187.1 4900 6.41% 426
NW_021160188.1 8140 9.81% 680
NW_021160189.1 14990 14.79% 1271
NW_021160190.1 8790 24.60% 710
NW_021160191.1 4640 16.66% 399
NW_021160193.1 440 1.41% 38
NW_021160196.1 17710 38.41% 1471
NW_021160197.1 11650 22.49% 995
NW_021160199.1 9160 16.38% 726
NW_021160200.1 6090 10.32% 516
NW_021160201.1 7280 11.85% 618
NW_021160202.1 4470 6.83% 358
NW_021160203.1 25060 34.71% 2133
NW_021160204.1 11600 15.93% 978
NW_021160205.1 3380 4.61% 310
NW_021160206.1 9990 11.93% 842
NW_021160207.1 14610 14.78% 1217
NW_021160209.1 51480 7.68% 4266
NW_021160211.1 17190 12.89% 1465
NW_021160220.1 8720 13.07% 723
NW_021160221.1 9770 13.79% 807
NW_021160222.1 5430 7.11% 458
NW_021160223.1 19670 23.61% 1706
NW_021160225.1 13810 25.65% 1146
NW_021160226.1 7680 21.31% 645
NW_021160228.1 5380 11.25% 459
NW_021160229.1 9070 18.90% 698
NW_021160231.1 6980 12.81% 597
NW_021160233.1 6940 10.74% 587
NW_021160234.1 20540 31.34% 1816
NW_021160236.1 9620 12.37% 792
NW_021160237.1 22370 26.10% 1877
NW_021160238.1 24850 23.79% 2124
NW_021160239.1 3030 10.39% 247
NW_021160242.1 4380 14.82% 366
NW_021160243.1 760 2.41% 67
NW_021160244.1 18380 52.19% 1545
NW_021160245.1 4550 10.40% 368
NW_021160248.1 6250 8.36% 527
NW_021160249.1 18910 24.98% 1616
NW_021160250.1 3640 5.66% 306
NW_021160251.1 7240 8.58% 618
NW_021160252.1 14460 16.31% 1192
NW_021160255.1 5520 19.66% 463
NW_021160263.1 3180 6.04% 273
NW_021160266.1 5010 6.68% 439
NW_021160268.1 9570 14.13% 790
NW_021160270.1 3460 9.93% 289
NW_021160271.1 3780 10.88% 331
NW_021160272.1 6450 18.43% 570
NW_021160273.1 4500 11.19% 377
NW_021160277.1 800 1.78% 77
NW_021160278.1 7300 13.12% 626
NW_021160279.1 8600 13.03% 717
NW_021160282.1 8960 7.24% 744
NW_021160284.1 1290 3.71% 102
NW_021160285.1 1600 3.59% 131
NW_021160291.1 2250 4.97% 183
NW_021160293.1 14040 26.58% 1180
NW_021160294.1 21820 27.40% 1820
NW_021160295.1 16130 19.54% 1353
NW_021160297.1 15850 28.19% 1362
NW_021160298.1 3280 12.04% 275
NW_021160300.1 16770 26.93% 1464
NW_021160305.1 890 2.21% 81
NW_021160306.1 7210 18.27% 606
NW_021160307.1 11570 21.96% 956
NW_021160308.1 7510 13.93% 615
NW_021160310.1 21970 37.71% 1872
NW_021160311.1 26530 33.69% 2258
NW_021160312.1 17620 19.93% 1512
NW_021160313.1 16300 17.23% 1375
NW_021160319.1 10467 24.10% 874
NW_021160320.1 8360 15.91% 695
NW_021160324.1 20270 31.87% 1740
NW_021160325.1 7130 10.94% 593
NW_021160326.1 24790 38.06% 2159
NW_021160327.1 12890 19.54% 1080
NW_021160328.1 23350 36.87% 2097
NW_021160329.1 7620 14.19% 638
NW_021160338.1 1640 4.37% 142
NW_021160339.1 4880 12.66% 414
NW_021160341.1 11140 24.06% 960
NW_021160347.1 35090 21.23% 2936
NW_021160353.1 11330 27.52% 943
NW_021160354.1 8330 19.85% 707
NW_021160355.1 11760 21.17% 963
NW_021160356.1 7770 10.18% 671
NW_021160357.1 6970 22.89% 631
NW_021160358.1 13930 35.31% 1168
NW_021160359.1 7110 17.32% 576
NW_021160361.1 3220 6.84% 275
NW_021160362.1 6390 11.91% 542
NW_021160363.1 28670 47.06% 2539
NW_021160364.1 17660 28.57% 1540
NW_021160365.1 11550 17.39% 991
NW_021160366.1 17020 23.89% 1416
NW_021160367.1 23280 30.48% 1998
NW_021160368.1 3530 4.47% 311
NW_021160369.1 4990 6.10% 424
NW_021160370.1 18380 20.54% 1547
NW_021160371.1 6920 7.65% 585
NW_021160372.1 34320 25.53% 2936
NW_021160373.1 16190 27.84% 1386
NW_021160374.1 35490 28.55% 2983
NW_021160375.1 46910 25.52% 3843
NW_021160376.1 218570 25.33% 17701
NW_021160381.1 590 1.21% 56
NW_021160383.1 26847 38.91% 2182
NW_021160384.1 12450 15.64% 1082
NW_021160401.1 3460 21.26% 267
NW_021160410.1 7700 46.79% 677
NW_021160417.1 6350 11.22% 514
NW_021160452.1 2590 15.30% 223
NW_021160482.1 130 0.75% 13
NW_021160484.1 5580 32.07% 445
NW_021160495.1 190000 23.06% 15681
NW_021160514.1 2250 12.49% 186
NW_021160523.1 800 4.43% 61
NW_021160525.1 3370 18.58% 278
NW_021160535.1 4850 26.46% 403
NW_021160549.1 1160 6.25% 99
NW_021160573.1 6850 35.99% 598
NW_021160589.1 250 1.30% 24
NW_021160606.1 163290 16.23% 13334
NW_021160623.1 2500 12.64% 210
NW_021160625.1 490 2.48% 41
NW_021160629.1 310 1.56% 28
NW_021160635.1 400 1.99% 37
NW_021160655.1 8450 41.07% 688
NW_021160656.1 1840 8.99% 159
NW_021160678.1 1070 5.15% 98
NW_021160682.1 10455 50.45% 863
NW_021160688.1 8020 39.28% 703
NW_021160701.1 8136 38.35% 726
NW_021160725.1 570 2.63% 53
NW_021160726.1 14360 66.03% 1375
NW_021160734.1 1280 5.88% 114
NW_021160737.1 30 0.14% 3
NW_021160757.1 300 1.36% 28
NW_021160770.1 14260 63.01% 1350
NW_021160772.1 3970 17.51% 346
NW_021160805.1 5140 21.92% 430
NW_021160821.1 1170 4.89% 109
NW_021160827.1 81110 11.05% 7180
NW_021160832.1 840 3.49% 71
NW_021160834.1 6230 25.83% 506
NW_021160835.1 40 0.24% 4
NW_021160848.1 430 1.77% 37
NW_021160868.1 210 0.86% 19
NW_021160890.1 5000 19.80% 418
NW_021160903.1 10476 39.55% 929
NW_021160919.1 1590 6.10% 149
NW_021160925.1 2860 10.96% 251
NW_021160946.1 3780 14.28% 333
NW_021160955.1 5680 21.40% 474
NW_021160961.1 4050 15.13% 344
NW_021160976.1 11970 43.98% 1016
NW_021160983.1 530 1.94% 42
NW_021160986.1 240 0.88% 22
NW_021161026.1 230 0.82% 22
NW_021161033.1 270 0.94% 25
NW_021161038.1 5110 18.88% 455
NW_021161041.1 3500 12.28% 293
NW_021161043.1 950 3.26% 87
NW_021161046.1 5310 18.00% 489
NW_021161062.1 2350 7.93% 200
NW_021161066.1 9120 30.57% 768
NW_021161106.1 7780 25.38% 646
NW_021161107.1 2090 6.79% 185
NW_021161113.1 6850 20.31% 570
NW_021161114.1 6730 21.82% 615
NW_021161131.1 380 1.22% 34
NW_021161133.1 10160 6.84% 864
NW_021161138.1 400 1.28% 36
NW_021161152.1 2790 8.87% 239
NW_021161164.1 4410 13.64% 382
NW_021161166.1 14100 43.39% 1156
NW_021161184.1 1540 5.21% 132
NW_021161201.1 2830 8.52% 244
NW_021161211.1 8710 26.10% 737
NW_021161213.1 2140 6.43% 181
NW_021161224.1 7420 22.01% 630
NW_021161226.1 6110 18.33% 546
NW_021161241.1 1180 3.44% 105
NW_021161247.1 100 0.29% 10
NW_021161253.1 250 0.72% 21
NW_021161261.1 3850 11.01% 324
NW_021161269.1 8600 24.50% 697
NW_021161274.1 60 0.17% 6
NW_021161282.1 16340 42.03% 1460
NW_021161303.1 2620 7.28% 215
NW_021161305.1 1030 2.86% 78
NW_021161307.1 1590 5.99% 138
NW_021161312.1 580 1.62% 51
NW_021161320.1 13540 13.78% 1127
NW_021161336.1 3110 8.44% 263
NW_021161338.1 2620 7.05% 218
NW_021161340.1 1680 4.57% 136
NW_021161348.1 7090 18.94% 592
NW_021161355.1 11000 28.47% 924
NW_021161360.1 960 2.56% 87
NW_021161364.1 4530 11.86% 394
NW_021161377.1 16390 41.22% 1376
NW_021161379.1 850 2.22% 74
NW_021161380.1 800 2.51% 76
NW_021161385.1 1080 2.78% 90
NW_021161392.1 9890 25.28% 841
NW_021161394.1 3010 7.75% 258
NW_021161396.1 620 1.59% 57
NW_021161399.1 5170 23.58% 444
NW_021161404.1 3330 8.45% 278
NW_021161413.1 7220 18.23% 589
NW_021161421.1 1200 3.02% 101
NW_021161422.1 710 1.79% 64
NW_021161427.1 1920 4.79% 157
NW_021161433.1 1720 4.25% 132
NW_021161437.1 2250 7.49% 184
NW_021161446.1 5100 12.46% 438
NW_021161463.1 410 0.98% 32
NW_021161468.1 4170 9.94% 347
NW_021161470.1 1380 3.29% 121
NW_021161483.1 320 0.76% 26
NW_021161486.1 9840 23.12% 864
NW_021161494.1 1840 4.30% 157
NW_021161497.1 2140 4.99% 183
NW_021161505.1 5880 13.64% 488
NW_021161507.1 8360 19.31% 707
NW_021161508.1 11844 27.45% 957
NW_021161519.1 17690 40.33% 1493
NW_021161520.1 7580 17.59% 688
NW_021161523.1 6880 15.90% 585
NW_021161525.1 11150 25.33% 926
NW_021161526.1 6650 15.10% 584
NW_021161532.1 1890 4.25% 169
NW_021161535.1 3200 7.17% 266
NW_021161537.1 14600 32.92% 1248
NW_021161545.1 14389 32.21% 1295
NW_021161552.1 1520 3.57% 130
NW_021161554.1 8650 19.16% 714
NW_021161561.1 12720 28.15% 1063
NW_021161562.1 12400 27.27% 1074
NW_021161567.1 3550 7.80% 293
NW_021161570.1 260 0.57% 23
NW_021161582.1 12600 27.43% 1049
NW_021161585.1 10080 21.87% 810
NW_021161590.1 25800 56.08% 2283
NW_021161593.1 21290 45.75% 1808
NW_021161596.1 81920 15.19% 7044
NW_021161601.1 7060 15.01% 599
NW_021161608.1 2620 5.61% 217
NW_021161609.1 1890 4.02% 160
NW_021161614.1 2200 4.61% 186
NW_021161616.1 6610 13.81% 572
NW_021161617.1 1750 3.64% 154
NW_021161627.1 3900 11.66% 326
NW_021161633.1 32620 66.01% 2823
NW_021161642.1 4020 8.08% 348
NW_021161648.1 19290 37.91% 1645
NW_021161679.1 5220 10.01% 431
NW_021161680.1 6100 11.79% 516
NW_021161686.1 25930 19.17% 2208
NW_021161694.1 3420 7.52% 303
NW_021161695.1 12050 22.55% 992
NW_021161696.1 4530 8.54% 383
NW_021161699.1 11704 24.20% 969
NW_021161700.1 820 1.55% 68
NW_021161713.1 2970 5.51% 247
NW_021161715.1 990 1.82% 89
NW_021161718.1 22200 40.75% 1933
NW_021161725.1 6010 19.10% 497
NW_021161737.1 7900 14.14% 680
NW_021161743.1 3550 6.34% 293
NW_021161747.1 860 1.52% 80
NW_021161754.1 20040 35.04% 1678
NW_021161759.1 1900 3.31% 159
NW_021161767.1 9960 9.75% 833
NW_021161769.1 5110 8.81% 436
NW_021161772.1 7590 10.27% 653
NW_021161784.1 2040 39.63% 174
NW_021161790.1 15590 25.83% 1262
NW_021161794.1 3300 5.46% 269
NW_021161796.1 6820 11.29% 591
NW_021161798.1 7460 15.85% 646
NW_021161830.1 11880 26.55% 963
NW_021161832.1 3340 5.27% 271
NW_021161839.1 4090 6.39% 352
NW_021161842.1 12400 19.01% 995
NW_021161843.1 5770 8.86% 476
NW_021161845.1 31650 48.40% 2745
NW_021161850.1 563521 50.44% 46317
NW_021161853.1 14890 22.56% 1313
NW_021161857.1 10200 15.37% 834
NW_021161862.1 7670 11.59% 632
NW_021161876.1 19110 27.99% 1568
NW_021161878.1 12030 17.69% 1011
NW_021161881.1 14180 23.54% 1185
NW_021161888.1 15410 22.20% 1365
NW_021161902.1 11420 17.62% 940
NW_021161927.1 8580 11.47% 736
NW_021161934.1 8160 10.83% 697
NW_021161939.1 17620 23.26% 1505
NW_021161954.1 11290 14.64% 929
NW_021161955.1 7850 10.13% 654
NW_021161956.1 22140 28.99% 1929
NW_021161958.1 17220 21.93% 1362
NW_021161961.1 38400 49.10% 3336
NW_021161962.1 3180 3.98% 270
NW_021161965.1 11030 13.95% 932
NW_021161996.1 10230 11.90% 853
NW_021162004.1 1600 5.63% 138
NW_021162007.1 14250 16.22% 1208
NW_021162009.1 43490 49.89% 3814
NW_021162025.1 10690 11.99% 931
NW_021162035.1 11150 11.95% 941
NW_021162047.1 8130 8.50% 675
NW_021162055.1 22470 22.58% 1866
NW_021162083.1 35110 20.38% 2934
NW_021162091.1 21700 19.13% 1882
NW_021162100.1 20470 16.29% 1803
NW_021162108.1 18060 56.66% 1560
NW_021162157.1 3570 5.93% 314
NW_021162185.1 140 1.59% 12
NW_021162208.1 8130 3.27% 721
NW_021162222.1 9355 24.71% 735
NW_021162226.1 8440 19.33% 720
NW_021162246.1 38020 35.99% 3059
NW_021162251.1 25840 36.18% 2140
NW_021162253.1 340 1.09% 32
NW_021162263.1 1540 5.81% 124
NW_021162265.1 19300 49.94% 1683
NW_021162274.1 39140 38.55% 3259
NW_021162277.1 3530 14.19% 285
NW_021162460.1 120 1.60% 12
NW_021162463.1 660 8.74% 63
NW_021162495.1 390 5.92% 36
NW_021162553.1 1280 14.78% 114
NW_021162593.1 770 8.28% 62
NW_021162599.1 5200 55.47% 453
NW_021162621.1 2130 21.80% 178
NW_021162643.1 12285 48.34% 1050
NW_021162814.1 720 5.81% 61
NW_021162871.1 1210 8.72% 100
NW_021162949.1 80 0.53% 8
NW_021163002.1 160 1.01% 16
2533 contigs with no values (90119066 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 160897644 1 140 11.82 10
global segment-length histogram

Files

Filename Size md5
Microglia.bw 908.78 MB 409f587448f636fa767d1dabd1463f21
genomic_resource.yaml 1.1 KB 7bf2e3a5ab5421c9cf3114986a6888a2
statistics/