Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/OB_FRMD7_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for OB_FRMD7_GABA cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: OB_FRMD7_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_OB_FRMD7_GABA float

johansen2025Crossspecies_atac_macaque_OB_FRMD7_GABA

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_OB_FRMD7_GABA [0.685, 107]
n
169,376,049
mean
0.91
sd
0.879

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1693760495.70% 15282657
NC_005943.1 1360 8.21% 123
NC_027914.1 152580 1.30% 14647
NC_041754.1 14901400 6.66% 1337737
NC_041755.1 10718020 5.46% 976851
NC_041756.1 11203130 6.05% 1011727
NC_041757.1 9120480 5.37% 831686
NC_041758.1 8340200 4.45% 767737
NC_041759.1 9414220 5.26% 859579
NC_041760.1 11044360 6.50% 993109
NC_041761.1 8155260 5.60% 739189
NC_041762.1 7850890 5.85% 710762
NC_041763.1 8386160 8.43% 741020
NC_041764.1 8396790 6.31% 755791
NC_041765.1 7122920 5.48% 650502
NC_041766.1 6560340 6.03% 593916
NC_041767.1 8717790 6.81% 779459
NC_041768.1 6822050 6.02% 614464
NC_041769.1 7454220 9.36% 653343
NC_041770.1 4685230 4.91% 428698
NC_041771.1 4256840 5.72% 387359
NC_041772.1 5650920 9.69% 491085
NC_041773.1 6102130 7.91% 541499
NC_041774.1 4009500 2.61% 374160
NW_021160097.1 40 0.11% 4
NW_021160098.1 350 0.88% 30
NW_021160099.1 80 0.20% 8
NW_021160102.1 180 0.36% 18
NW_021160105.1 170 0.31% 16
NW_021160106.1 950 1.71% 91
NW_021160107.1 100 0.18% 10
NW_021160109.1 870 1.06% 78
NW_021160110.1 2140 1.81% 197
NW_021160111.1 1340 1.01% 130
NW_021160113.1 12350 10.62% 1052
NW_021160114.1 1490 2.26% 133
NW_021160116.1 140 0.40% 14
NW_021160121.1 250 0.29% 24
NW_021160122.1 390 0.42% 39
NW_021160123.1 700 1.32% 60
NW_021160136.1 650 1.09% 60
NW_021160140.1 720 0.55% 70
NW_021160141.1 570 0.42% 56
NW_021160142.1 1600 3.35% 150
NW_021160144.1 7000 0.57% 693
NW_021160145.1 20 0.07% 2
NW_021160147.1 280 0.93% 27
NW_021160148.1 600 1.75% 53
NW_021160150.1 980 2.61% 87
NW_021160155.1 680 1.25% 61
NW_021160158.1 260 0.34% 25
NW_021160159.1 750 0.87% 74
NW_021160161.1 7282 0.99% 706
NW_021160167.1 60 0.16% 6
NW_021160168.1 120 0.29% 11
NW_021160175.1 8080 4.36% 745
NW_021160179.1 80 0.21% 8
NW_021160182.1 1720 2.96% 148
NW_021160184.1 130 0.21% 13
NW_021160185.1 160 0.26% 15
NW_021160186.1 1010 1.57% 91
NW_021160187.1 180 0.24% 18
NW_021160188.1 290 0.35% 29
NW_021160189.1 690 0.68% 66
NW_021160190.1 780 2.18% 75
NW_021160191.1 190 0.68% 18
NW_021160193.1 20 0.06% 2
NW_021160196.1 1400 3.04% 128
NW_021160197.1 710 1.37% 66
NW_021160199.1 180 0.32% 18
NW_021160200.1 220 0.37% 22
NW_021160201.1 610 0.99% 57
NW_021160202.1 420 0.64% 41
NW_021160203.1 800 1.11% 76
NW_021160204.1 570 0.78% 57
NW_021160205.1 60 0.08% 6
NW_021160206.1 610 0.73% 54
NW_021160207.1 730 0.74% 71
NW_021160209.1 1510 0.23% 148
NW_021160211.1 650 0.49% 60
NW_021160220.1 3110 4.66% 263
NW_021160221.1 510 0.72% 48
NW_021160222.1 130 0.17% 11
NW_021160223.1 2720 3.26% 236
NW_021160225.1 420 0.78% 39
NW_021160226.1 890 2.47% 83
NW_021160228.1 300 0.63% 29
NW_021160229.1 190 0.40% 18
NW_021160231.1 80 0.15% 8
NW_021160233.1 490 0.76% 45
NW_021160234.1 4940 7.54% 429
NW_021160236.1 470 0.60% 43
NW_021160237.1 2650 3.09% 230
NW_021160238.1 2100 2.01% 182
NW_021160239.1 20 0.07% 2
NW_021160242.1 280 0.95% 26
NW_021160243.1 60 0.19% 6
NW_021160244.1 5110 14.51% 431
NW_021160245.1 140 0.32% 11
NW_021160248.1 190 0.25% 18
NW_021160249.1 670 0.89% 64
NW_021160250.1 190 0.30% 19
NW_021160251.1 990 1.17% 95
NW_021160252.1 1410 1.59% 136
NW_021160255.1 450 1.60% 43
NW_021160263.1 100 0.19% 10
NW_021160266.1 180 0.24% 18
NW_021160268.1 480 0.71% 48
NW_021160270.1 410 1.18% 39
NW_021160271.1 380 1.09% 36
NW_021160272.1 660 1.89% 56
NW_021160273.1 140 0.35% 14
NW_021160277.1 70 0.16% 6
NW_021160278.1 140 0.25% 14
NW_021160279.1 670 1.02% 58
NW_021160282.1 1950 1.58% 178
NW_021160284.1 130 0.37% 10
NW_021160285.1 130 0.29% 13
NW_021160291.1 60 0.13% 6
NW_021160293.1 1290 2.44% 118
NW_021160294.1 860 1.08% 75
NW_021160295.1 330 0.40% 31
NW_021160297.1 700 1.24% 64
NW_021160298.1 60 0.22% 6
NW_021160300.1 1080 1.73% 100
NW_021160305.1 60 0.15% 6
NW_021160306.1 170 0.43% 17
NW_021160307.1 530 1.01% 51
NW_021160308.1 280 0.52% 27
NW_021160310.1 3170 5.44% 275
NW_021160311.1 1590 2.02% 145
NW_021160312.1 1710 1.93% 144
NW_021160313.1 630 0.67% 58
NW_021160319.1 690 1.59% 65
NW_021160320.1 340 0.65% 32
NW_021160324.1 900 1.41% 83
NW_021160325.1 200 0.31% 20
NW_021160326.1 310 0.48% 26
NW_021160327.1 1170 1.77% 102
NW_021160328.1 2930 4.63% 271
NW_021160329.1 310 0.58% 31
NW_021160338.1 80 0.21% 8
NW_021160339.1 150 0.39% 15
NW_021160341.1 310 0.67% 31
NW_021160347.1 1270 0.77% 123
NW_021160353.1 640 1.55% 58
NW_021160354.1 260 0.62% 25
NW_021160355.1 400 0.72% 40
NW_021160356.1 190 0.25% 19
NW_021160357.1 40 0.13% 4
NW_021160358.1 530 1.34% 47
NW_021160359.1 380 0.93% 37
NW_021160361.1 130 0.28% 13
NW_021160362.1 140 0.26% 12
NW_021160363.1 760 1.25% 75
NW_021160364.1 570 0.92% 52
NW_021160365.1 580 0.87% 56
NW_021160366.1 880 1.23% 76
NW_021160367.1 2170 2.84% 194
NW_021160368.1 100 0.13% 10
NW_021160369.1 190 0.23% 18
NW_021160370.1 1260 1.41% 111
NW_021160371.1 350 0.39% 34
NW_021160372.1 2300 1.71% 207
NW_021160373.1 1140 1.96% 103
NW_021160374.1 1130 0.91% 105
NW_021160375.1 2000 1.09% 192
NW_021160376.1 13030 1.51% 1229
NW_021160381.1 20 0.04% 2
NW_021160383.1 1677 2.43% 157
NW_021160384.1 100 0.13% 10
NW_021160401.1 100 0.61% 10
NW_021160410.1 1670 10.15% 144
NW_021160417.1 160 0.28% 15
NW_021160452.1 140 0.83% 11
NW_021160484.1 170 0.98% 16
NW_021160495.1 5410 0.66% 530
NW_021160514.1 230 1.28% 23
NW_021160523.1 120 0.66% 12
NW_021160525.1 120 0.66% 12
NW_021160535.1 180 0.98% 17
NW_021160549.1 620 3.34% 52
NW_021160573.1 610 3.20% 56
NW_021160606.1 4360 0.43% 421
NW_021160623.1 200 1.01% 16
NW_021160635.1 60 0.30% 6
NW_021160655.1 290 1.41% 28
NW_021160656.1 100 0.49% 10
NW_021160678.1 20 0.10% 2
NW_021160682.1 2330 11.24% 203
NW_021160688.1 620 3.04% 58
NW_021160701.1 1050 4.95% 84
NW_021160725.1 40 0.18% 4
NW_021160726.1 4740 21.80% 367
NW_021160734.1 100 0.46% 9
NW_021160770.1 4540 20.06% 367
NW_021160772.1 220 0.97% 20
NW_021160805.1 970 4.14% 83
NW_021160827.1 6050 0.82% 540
NW_021160834.1 120 0.50% 11
NW_021160890.1 120 0.48% 12
NW_021160903.1 410 1.55% 39
NW_021160919.1 140 0.54% 14
NW_021160925.1 20 0.08% 2
NW_021160946.1 410 1.55% 36
NW_021160955.1 120 0.45% 12
NW_021160961.1 40 0.15% 4
NW_021160976.1 250 0.92% 23
NW_021160986.1 20 0.07% 2
NW_021161038.1 660 2.44% 55
NW_021161041.1 60 0.21% 6
NW_021161043.1 40 0.14% 4
NW_021161046.1 520 1.76% 50
NW_021161062.1 60 0.20% 6
NW_021161066.1 570 1.91% 57
NW_021161106.1 340 1.11% 33
NW_021161107.1 20 0.07% 2
NW_021161113.1 390 1.16% 39
NW_021161114.1 1030 3.34% 80
NW_021161133.1 190 0.13% 18
NW_021161152.1 440 1.40% 41
NW_021161164.1 440 1.36% 40
NW_021161166.1 430 1.32% 41
NW_021161184.1 40 0.14% 4
NW_021161201.1 40 0.12% 4
NW_021161211.1 290 0.87% 29
NW_021161224.1 350 1.04% 34
NW_021161226.1 490 1.47% 45
NW_021161241.1 60 0.17% 6
NW_021161247.1 20 0.06% 2
NW_021161261.1 120 0.34% 11
NW_021161269.1 350 1.00% 35
NW_021161282.1 2520 6.48% 215
NW_021161303.1 40 0.11% 4
NW_021161307.1 20 0.08% 2
NW_021161312.1 20 0.06% 2
NW_021161320.1 450 0.46% 45
NW_021161336.1 340 0.92% 28
NW_021161338.1 40 0.11% 4
NW_021161340.1 340 0.92% 30
NW_021161348.1 320 0.85% 30
NW_021161355.1 670 1.73% 61
NW_021161360.1 20 0.05% 2
NW_021161364.1 170 0.45% 17
NW_021161377.1 960 2.41% 90
NW_021161379.1 20 0.05% 2
NW_021161385.1 60 0.15% 6
NW_021161392.1 1930 4.93% 171
NW_021161394.1 360 0.93% 34
NW_021161399.1 220 1.00% 22
NW_021161404.1 100 0.25% 10
NW_021161413.1 160 0.40% 16
NW_021161421.1 20 0.05% 2
NW_021161427.1 280 0.70% 25
NW_021161433.1 60 0.15% 6
NW_021161437.1 60 0.20% 6
NW_021161446.1 80 0.20% 8
NW_021161463.1 40 0.10% 4
NW_021161468.1 20 0.05% 2
NW_021161470.1 20 0.05% 2
NW_021161486.1 390 0.92% 37
NW_021161497.1 40 0.09% 4
NW_021161505.1 520 1.21% 45
NW_021161507.1 590 1.36% 53
NW_021161508.1 790 1.83% 73
NW_021161519.1 340 0.78% 33
NW_021161520.1 1970 4.57% 170
NW_021161523.1 40 0.09% 4
NW_021161525.1 910 2.07% 89
NW_021161526.1 490 1.11% 45
NW_021161532.1 60 0.13% 6
NW_021161535.1 140 0.31% 13
NW_021161537.1 1500 3.38% 134
NW_021161545.1 2210 4.95% 192
NW_021161552.1 70 0.16% 7
NW_021161554.1 210 0.47% 21
NW_021161561.1 380 0.84% 36
NW_021161562.1 610 1.34% 57
NW_021161567.1 120 0.26% 11
NW_021161570.1 20 0.04% 2
NW_021161582.1 550 1.20% 52
NW_021161585.1 1010 2.19% 91
NW_021161590.1 1230 2.67% 115
NW_021161593.1 1000 2.15% 98
NW_021161596.1 4520 0.84% 410
NW_021161601.1 230 0.49% 23
NW_021161608.1 160 0.34% 15
NW_021161614.1 200 0.42% 19
NW_021161616.1 1100 2.30% 97
NW_021161617.1 40 0.08% 4
NW_021161627.1 180 0.54% 18
NW_021161633.1 1570 3.18% 151
NW_021161642.1 60 0.12% 6
NW_021161648.1 4590 9.02% 376
NW_021161679.1 440 0.84% 43
NW_021161680.1 200 0.39% 20
NW_021161686.1 1720 1.27% 145
NW_021161694.1 120 0.26% 12
NW_021161695.1 220 0.41% 22
NW_021161696.1 120 0.23% 12
NW_021161699.1 750 1.55% 70
NW_021161713.1 60 0.11% 6
NW_021161718.1 970 1.78% 92
NW_021161725.1 290 0.92% 27
NW_021161737.1 340 0.61% 29
NW_021161743.1 160 0.29% 15
NW_021161754.1 3240 5.67% 279
NW_021161767.1 380 0.37% 38
NW_021161769.1 310 0.53% 29
NW_021161772.1 240 0.32% 23
NW_021161784.1 80 1.55% 8
NW_021161790.1 1580 2.62% 148
NW_021161794.1 20 0.03% 2
NW_021161796.1 140 0.23% 14
NW_021161798.1 270 0.57% 27
NW_021161830.1 880 1.97% 83
NW_021161832.1 100 0.16% 10
NW_021161839.1 200 0.31% 17
NW_021161842.1 800 1.23% 79
NW_021161843.1 100 0.15% 10
NW_021161845.1 1810 2.77% 166
NW_021161850.1 19370 1.73% 1827
NW_021161853.1 900 1.36% 84
NW_021161857.1 380 0.57% 37
NW_021161862.1 260 0.39% 24
NW_021161876.1 710 1.04% 70
NW_021161878.1 570 0.84% 52
NW_021161881.1 800 1.33% 77
NW_021161888.1 740 1.07% 72
NW_021161902.1 560 0.86% 52
NW_021161927.1 490 0.66% 46
NW_021161934.1 450 0.60% 45
NW_021161939.1 1170 1.54% 105
NW_021161954.1 350 0.45% 34
NW_021161955.1 280 0.36% 24
NW_021161956.1 1810 2.37% 158
NW_021161958.1 1270 1.62% 116
NW_021161961.1 830 1.06% 81
NW_021161962.1 90 0.11% 9
NW_021161965.1 200 0.25% 19
NW_021161996.1 260 0.30% 25
NW_021162004.1 90 0.32% 9
NW_021162007.1 340 0.39% 33
NW_021162009.1 6220 7.13% 537
NW_021162025.1 530 0.59% 51
NW_021162035.1 120 0.13% 12
NW_021162047.1 140 0.15% 14
NW_021162055.1 970 0.97% 88
NW_021162083.1 690 0.40% 68
NW_021162091.1 2260 1.99% 197
NW_021162100.1 2620 2.08% 224
NW_021162108.1 2090 6.56% 189
NW_021162157.1 270 0.45% 27
NW_021162208.1 340 0.14% 33
NW_021162222.1 140 0.37% 14
NW_021162226.1 120 0.27% 10
NW_021162246.1 4040 3.82% 378
NW_021162251.1 2880 4.03% 259
NW_021162263.1 100 0.38% 10
NW_021162265.1 1060 2.74% 89
NW_021162274.1 3530 3.48% 325
NW_021162277.1 100 0.40% 10
NW_021162463.1 60 0.79% 4
NW_021162553.1 40 0.46% 4
NW_021162593.1 20 0.22% 2
NW_021162599.1 590 6.29% 52
NW_021162621.1 80 0.82% 8
NW_021162643.1 650 2.56% 58
NW_021162871.1 130 0.94% 12
2571 contigs with no values (91224537 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 15282657 2 120 11.08 10
global segment-length histogram

Files

Filename Size md5
OB_FRMD7_GABA.bw 125.26 MB 199a2a8e13f2432a89a065175a94ab11
genomic_resource.yaml 1.11 KB 8246200813d1def595a424acfce865cd
statistics/