Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/OT_D1_ICj/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for OT_D1_ICj cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: OT_D1_ICj
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_OT_D1_ICj float

johansen2025Crossspecies_atac_macaque_OT_D1_ICj

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_OT_D1_ICj [0.0795, 175]
n
926,984,972
mean
0.181
sd
0.416

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 92698497231.20% 76400454
NC_005943.1 1870 11.29% 170
NC_027914.1 857530 7.30% 75497
NC_041754.1 80559150 36.03% 6621220
NC_041755.1 64173000 32.71% 5269253
NC_041756.1 60668560 32.74% 4993639
NC_041757.1 52709650 31.01% 4339011
NC_041758.1 52626870 28.10% 4353762
NC_041759.1 52963050 29.57% 4373639
NC_041760.1 59632560 35.11% 4901375
NC_041761.1 44014780 30.21% 3630559
NC_041762.1 44854320 33.44% 3677279
NC_041763.1 40869160 41.07% 3351914
NC_041764.1 44565180 33.49% 3669920
NC_041765.1 40922320 31.47% 3362219
NC_041766.1 35911670 33.03% 2952903
NC_041767.1 44399820 34.67% 3659131
NC_041768.1 37313190 32.94% 3077545
NC_041769.1 34496874 43.32% 2841039
NC_041770.1 28438630 29.80% 2344760
NC_041771.1 22967900 30.84% 1888665
NC_041772.1 24614550 42.21% 2049693
NC_041773.1 30570755 39.63% 2514570
NC_041774.1 27117020 17.68% 2303086
NW_021160097.1 210 0.57% 21
NW_021160098.1 2100 5.25% 194
NW_021160099.1 470 1.16% 45
NW_021160102.1 2200 4.38% 193
NW_021160105.1 1130 2.06% 104
NW_021160106.1 8170 14.71% 683
NW_021160107.1 1170 2.10% 110
NW_021160109.1 5090 6.18% 437
NW_021160110.1 13350 11.30% 1168
NW_021160111.1 8105 6.09% 738
NW_021160113.1 43870 37.71% 3733
NW_021160114.1 8980 13.62% 752
NW_021160116.1 880 2.49% 85
NW_021160121.1 1080 1.25% 106
NW_021160122.1 6730 7.31% 564
NW_021160123.1 3280 6.20% 278
NW_021160125.1 80 0.32% 8
NW_021160136.1 4030 6.75% 333
NW_021160140.1 4620 3.55% 412
NW_021160141.1 5740 4.28% 510
NW_021160142.1 11940 24.97% 938
NW_021160144.1 57370 4.66% 5397
NW_021160145.1 1030 3.83% 90
NW_021160147.1 1670 5.56% 148
NW_021160148.1 4390 12.79% 346
NW_021160150.1 2850 7.60% 261
NW_021160155.1 3010 5.52% 264
NW_021160158.1 2750 3.65% 245
NW_021160159.1 3420 3.99% 318
NW_021160161.1 54802 7.42% 4701
NW_021160167.1 430 1.14% 40
NW_021160168.1 430 1.03% 36
NW_021160175.1 57560 31.09% 4637
NW_021160179.1 980 2.52% 89
NW_021160182.1 9050 15.58% 791
NW_021160184.1 1800 2.94% 161
NW_021160185.1 1260 2.03% 114
NW_021160186.1 9000 13.96% 734
NW_021160187.1 1490 1.95% 141
NW_021160188.1 3660 4.41% 308
NW_021160189.1 5170 5.10% 439
NW_021160190.1 2760 7.72% 238
NW_021160191.1 1910 6.86% 158
NW_021160193.1 170 0.55% 16
NW_021160196.1 9340 20.26% 777
NW_021160197.1 3550 6.85% 318
NW_021160199.1 1240 2.22% 114
NW_021160200.1 2360 4.00% 203
NW_021160201.1 7280 11.85% 591
NW_021160202.1 3550 5.42% 302
NW_021160203.1 6380 8.84% 530
NW_021160204.1 5300 7.28% 462
NW_021160205.1 1130 1.54% 111
NW_021160206.1 4030 4.81% 324
NW_021160207.1 5490 5.56% 486
NW_021160209.1 13050 1.95% 1121
NW_021160211.1 4800 3.60% 414
NW_021160220.1 11930 17.88% 1004
NW_021160221.1 1790 2.53% 175
NW_021160222.1 1170 1.53% 105
NW_021160223.1 13290 15.95% 1119
NW_021160225.1 4480 8.32% 381
NW_021160226.1 4180 11.60% 341
NW_021160228.1 2210 4.62% 201
NW_021160229.1 1900 3.96% 176
NW_021160231.1 2080 3.82% 178
NW_021160233.1 3520 5.45% 298
NW_021160234.1 17740 27.06% 1517
NW_021160236.1 3050 3.92% 268
NW_021160237.1 5920 6.91% 516
NW_021160238.1 9010 8.63% 775
NW_021160239.1 640 2.19% 60
NW_021160242.1 1410 4.77% 119
NW_021160243.1 980 3.11% 90
NW_021160244.1 18790 53.35% 1638
NW_021160245.1 1680 3.84% 144
NW_021160248.1 2350 3.14% 206
NW_021160249.1 5050 6.67% 415
NW_021160250.1 670 1.04% 59
NW_021160251.1 7160 8.48% 596
NW_021160252.1 11700 13.20% 973
NW_021160255.1 2120 7.55% 177
NW_021160263.1 760 1.44% 68
NW_021160266.1 970 1.29% 89
NW_021160268.1 1730 2.55% 164
NW_021160270.1 3420 9.82% 291
NW_021160271.1 1650 4.75% 140
NW_021160272.1 3390 9.69% 292
NW_021160273.1 980 2.44% 83
NW_021160277.1 610 1.36% 55
NW_021160278.1 2430 4.37% 224
NW_021160279.1 5020 7.61% 430
NW_021160282.1 9010 7.28% 766
NW_021160284.1 1160 3.33% 99
NW_021160285.1 1930 4.33% 170
NW_021160291.1 780 1.72% 71
NW_021160293.1 5880 11.13% 493
NW_021160294.1 6680 8.39% 574
NW_021160295.1 2830 3.43% 262
NW_021160297.1 5130 9.12% 437
NW_021160298.1 2010 7.38% 168
NW_021160300.1 7870 12.64% 654
NW_021160305.1 390 0.97% 39
NW_021160306.1 1920 4.86% 172
NW_021160307.1 4190 7.95% 364
NW_021160308.1 2820 5.23% 250
NW_021160310.1 18230 31.29% 1544
NW_021160311.1 12680 16.10% 1061
NW_021160312.1 10000 11.31% 876
NW_021160313.1 5610 5.93% 470
NW_021160319.1 2480 5.71% 223
NW_021160320.1 3040 5.78% 252
NW_021160324.1 6040 9.50% 515
NW_021160325.1 2760 4.24% 246
NW_021160326.1 1670 2.56% 154
NW_021160327.1 5680 8.61% 487
NW_021160328.1 11900 18.79% 987
NW_021160329.1 4160 7.75% 342
NW_021160338.1 1160 3.09% 104
NW_021160339.1 700 1.82% 62
NW_021160341.1 1420 3.07% 134
NW_021160347.1 9410 5.69% 823
NW_021160353.1 3440 8.35% 297
NW_021160354.1 1200 2.86% 103
NW_021160355.1 4570 8.23% 403
NW_021160356.1 1490 1.95% 131
NW_021160357.1 440 1.44% 38
NW_021160358.1 3560 9.02% 291
NW_021160359.1 3560 8.67% 286
NW_021160361.1 1150 2.44% 104
NW_021160362.1 1740 3.24% 157
NW_021160363.1 5400 8.86% 460
NW_021160364.1 4270 6.91% 361
NW_021160365.1 7090 10.67% 591
NW_021160366.1 6440 9.04% 545
NW_021160367.1 11550 15.12% 987
NW_021160368.1 1310 1.66% 120
NW_021160369.1 670 0.82% 64
NW_021160370.1 9750 10.89% 842
NW_021160371.1 2220 2.46% 202
NW_021160372.1 11530 8.58% 988
NW_021160373.1 8100 13.93% 678
NW_021160374.1 6250 5.03% 562
NW_021160375.1 14540 7.91% 1279
NW_021160376.1 29860 3.46% 2763
NW_021160381.1 630 1.29% 57
NW_021160383.1 11520 16.70% 957
NW_021160384.1 1530 1.92% 140
NW_021160401.1 280 1.72% 25
NW_021160410.1 7670 46.61% 659
NW_021160417.1 1020 1.80% 88
NW_021160452.1 1020 6.02% 87
NW_021160482.1 170 0.98% 16
NW_021160484.1 1150 6.61% 100
NW_021160495.1 28800 3.50% 2627
NW_021160514.1 1190 6.60% 106
NW_021160523.1 880 4.87% 73
NW_021160525.1 330 1.82% 30
NW_021160535.1 900 4.91% 84
NW_021160549.1 2260 12.17% 194
NW_021160573.1 3230 16.97% 271
NW_021160589.1 20 0.10% 2
NW_021160606.1 19740 1.96% 1791
NW_021160623.1 1030 5.21% 88
NW_021160625.1 90 0.45% 9
NW_021160629.1 180 0.90% 14
NW_021160635.1 200 1.00% 19
NW_021160655.1 1750 8.51% 160
NW_021160656.1 350 1.71% 33
NW_021160678.1 220 1.06% 21
NW_021160682.1 8985 43.35% 741
NW_021160688.1 3330 16.31% 289
NW_021160701.1 4270 20.13% 365
NW_021160725.1 430 1.99% 37
NW_021160726.1 11840 54.44% 1084
NW_021160734.1 220 1.01% 22
NW_021160757.1 80 0.36% 8
NW_021160770.1 10690 47.23% 964
NW_021160772.1 1310 5.78% 113
NW_021160805.1 2590 11.05% 225
NW_021160821.1 230 0.96% 22
NW_021160827.1 28480 3.88% 2388
NW_021160832.1 220 0.91% 20
NW_021160834.1 910 3.77% 85
NW_021160835.1 40 0.24% 4
NW_021160848.1 250 1.03% 21
NW_021160890.1 940 3.72% 83
NW_021160903.1 3340 12.61% 286
NW_021160919.1 1260 4.83% 102
NW_021160925.1 160 0.61% 16
NW_021160946.1 2280 8.61% 191
NW_021160955.1 1010 3.80% 89
NW_021160961.1 1150 4.30% 102
NW_021160976.1 2950 10.84% 253
NW_021160983.1 70 0.26% 7
NW_021160986.1 40 0.15% 4
NW_021161033.1 20 0.07% 2
NW_021161038.1 2280 8.42% 195
NW_021161041.1 550 1.93% 48
NW_021161043.1 100 0.34% 10
NW_021161046.1 2980 10.10% 257
NW_021161062.1 590 1.99% 54
NW_021161066.1 3470 11.63% 294
NW_021161106.1 4600 15.01% 386
NW_021161107.1 370 1.20% 35
NW_021161113.1 1730 5.13% 156
NW_021161114.1 4250 13.78% 377
NW_021161131.1 20 0.06% 2
NW_021161133.1 1980 1.33% 186
NW_021161138.1 260 0.83% 20
NW_021161152.1 2220 7.05% 195
NW_021161164.1 2070 6.40% 182
NW_021161166.1 2040 6.28% 185
NW_021161184.1 290 0.98% 28
NW_021161201.1 1170 3.52% 103
NW_021161211.1 1460 4.38% 133
NW_021161213.1 180 0.54% 17
NW_021161224.1 3350 9.94% 284
NW_021161226.1 2490 7.47% 210
NW_021161241.1 40 0.12% 4
NW_021161253.1 30 0.09% 3
NW_021161261.1 1140 3.26% 96
NW_021161269.1 3650 10.40% 312
NW_021161274.1 20 0.06% 2
NW_021161282.1 9380 24.13% 781
NW_021161303.1 440 1.22% 42
NW_021161305.1 280 0.78% 27
NW_021161307.1 720 2.71% 58
NW_021161312.1 110 0.31% 10
NW_021161320.1 2510 2.56% 219
NW_021161336.1 2000 5.43% 185
NW_021161338.1 750 2.02% 70
NW_021161340.1 800 2.18% 70
NW_021161348.1 1930 5.15% 166
NW_021161355.1 3150 8.15% 272
NW_021161360.1 310 0.83% 27
NW_021161364.1 2070 5.42% 168
NW_021161377.1 6220 15.64% 513
NW_021161379.1 110 0.29% 10
NW_021161380.1 120 0.38% 12
NW_021161385.1 300 0.77% 29
NW_021161392.1 5150 13.17% 455
NW_021161394.1 2090 5.38% 183
NW_021161396.1 100 0.26% 10
NW_021161399.1 2100 9.58% 174
NW_021161404.1 720 1.83% 70
NW_021161413.1 2440 6.16% 208
NW_021161421.1 80 0.20% 8
NW_021161422.1 420 1.06% 32
NW_021161427.1 1390 3.47% 112
NW_021161433.1 80 0.20% 8
NW_021161437.1 240 0.80% 24
NW_021161446.1 850 2.08% 78
NW_021161463.1 70 0.17% 7
NW_021161468.1 360 0.86% 34
NW_021161470.1 270 0.64% 24
NW_021161486.1 2780 6.53% 227
NW_021161494.1 260 0.61% 25
NW_021161497.1 390 0.91% 34
NW_021161505.1 2450 5.69% 212
NW_021161507.1 2490 5.75% 220
NW_021161508.1 7160 16.59% 596
NW_021161519.1 2670 6.09% 243
NW_021161520.1 4130 9.58% 381
NW_021161523.1 1410 3.26% 116
NW_021161525.1 10330 23.46% 838
NW_021161526.1 5570 12.64% 476
NW_021161532.1 250 0.56% 25
NW_021161535.1 310 0.69% 31
NW_021161537.1 6290 14.18% 530
NW_021161545.1 8360 18.71% 684
NW_021161552.1 200 0.47% 20
NW_021161554.1 1450 3.21% 134
NW_021161561.1 4180 9.25% 342
NW_021161562.1 4230 9.30% 357
NW_021161567.1 540 1.19% 48
NW_021161570.1 100 0.22% 10
NW_021161582.1 6260 13.63% 524
NW_021161585.1 5670 12.30% 476
NW_021161590.1 9660 21.00% 778
NW_021161593.1 7530 16.18% 630
NW_021161596.1 25290 4.69% 2164
NW_021161601.1 1290 2.74% 119
NW_021161608.1 660 1.41% 60
NW_021161609.1 260 0.55% 25
NW_021161614.1 1750 3.67% 158
NW_021161616.1 2270 4.74% 206
NW_021161617.1 130 0.27% 12
NW_021161627.1 2140 6.40% 183
NW_021161633.1 11340 22.95% 949
NW_021161642.1 1800 3.62% 156
NW_021161648.1 16770 32.96% 1461
NW_021161679.1 2400 4.60% 196
NW_021161680.1 1540 2.98% 134
NW_021161686.1 8540 6.31% 734
NW_021161694.1 860 1.89% 77
NW_021161695.1 1750 3.27% 150
NW_021161696.1 1110 2.09% 104
NW_021161699.1 4130 8.54% 348
NW_021161700.1 180 0.34% 15
NW_021161713.1 570 1.06% 54
NW_021161715.1 200 0.37% 19
NW_021161718.1 6780 12.44% 548
NW_021161725.1 7140 22.69% 580
NW_021161737.1 1710 3.06% 153
NW_021161743.1 540 0.96% 50
NW_021161747.1 140 0.25% 14
NW_021161754.1 10190 17.82% 843
NW_021161759.1 400 0.70% 34
NW_021161767.1 7830 7.67% 665
NW_021161769.1 1530 2.64% 131
NW_021161772.1 4090 5.53% 361
NW_021161784.1 580 11.27% 52
NW_021161790.1 9450 15.66% 769
NW_021161794.1 570 0.94% 56
NW_021161796.1 1130 1.87% 109
NW_021161798.1 1270 2.70% 112
NW_021161830.1 1370 3.06% 130
NW_021161832.1 1110 1.75% 99
NW_021161839.1 1260 1.97% 117
NW_021161842.1 1390 2.13% 135
NW_021161843.1 1270 1.95% 120
NW_021161845.1 13810 21.12% 1156
NW_021161850.1 94431 8.45% 8335
NW_021161853.1 8380 12.70% 711
NW_021161857.1 1390 2.10% 135
NW_021161862.1 2020 3.05% 176
NW_021161876.1 2970 4.35% 274
NW_021161878.1 2890 4.25% 251
NW_021161881.1 9480 15.74% 810
NW_021161888.1 7650 11.02% 619
NW_021161902.1 9320 14.38% 799
NW_021161927.1 6240 8.34% 531
NW_021161934.1 3450 4.58% 301
NW_021161939.1 8130 10.73% 684
NW_021161954.1 3710 4.81% 324
NW_021161955.1 4470 5.77% 379
NW_021161956.1 11140 14.59% 921
NW_021161958.1 5150 6.56% 458
NW_021161961.1 6980 8.93% 602
NW_021161962.1 620 0.78% 59
NW_021161965.1 3340 4.23% 303
NW_021161996.1 2990 3.48% 259
NW_021162004.1 710 2.50% 56
NW_021162007.1 2950 3.36% 271
NW_021162009.1 26040 29.87% 2195
NW_021162025.1 2970 3.33% 261
NW_021162035.1 2340 2.51% 207
NW_021162047.1 2230 2.33% 201
NW_021162055.1 6920 6.96% 596
NW_021162083.1 5550 3.22% 508
NW_021162091.1 11250 9.92% 935
NW_021162100.1 10640 8.47% 909
NW_021162108.1 9500 29.81% 773
NW_021162157.1 1090 1.81% 95
NW_021162185.1 20 0.23% 2
NW_021162208.1 820 0.33% 78
NW_021162222.1 1510 3.99% 145
NW_021162226.1 820 1.88% 72
NW_021162246.1 13330 12.62% 1139
NW_021162251.1 12350 17.29% 1047
NW_021162253.1 80 0.26% 8
NW_021162263.1 540 2.04% 49
NW_021162265.1 5800 15.01% 472
NW_021162274.1 21850 21.52% 1824
NW_021162277.1 1820 7.32% 164
NW_021162460.1 80 1.06% 8
NW_021162463.1 320 4.24% 30
NW_021162495.1 230 3.49% 21
NW_021162553.1 430 4.96% 36
NW_021162593.1 160 1.72% 16
NW_021162599.1 3050 32.53% 245
NW_021162621.1 350 3.58% 32
NW_021162643.1 4440 17.47% 378
NW_021162814.1 150 1.21% 14
NW_021162871.1 980 7.06% 83
2540 contigs with no values (90300591 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 76400454 1 140 12.13 10
global segment-length histogram

Files

Filename Size md5
OT_D1_ICj.bw 523.06 MB 6a93699a2d6c4de958b819a43532ed8f
genomic_resource.yaml 1.1 KB 8eb81cfb2f755dae04d65cfdb586418e
statistics/