Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/Oligo_OPALIN/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for Oligo_OPALIN cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: Oligo_OPALIN
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_Oligo_OPALIN float

johansen2025Crossspecies_atac_macaque_Oligo_OPALIN

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_Oligo_OPALIN [0.00892, 292]
n
1,898,446,036
mean
0.0597
sd
0.361

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 189844603663.89% 161716860
NC_005943.1 2900 17.51% 285
NC_027914.1 4403420 37.46% 357105
NC_041754.1 156408950 69.95% 13437760
NC_041755.1 132706680 67.64% 11266469
NC_041756.1 124326327 67.10% 10559869
NC_041757.1 112936770 66.45% 9566905
NC_041758.1 119626520 63.86% 10015036
NC_041759.1 119326970 66.63% 10100662
NC_041760.1 115645940 68.08% 9907411
NC_041761.1 96885900 66.51% 8209991
NC_041762.1 86990410 64.86% 7388954
NC_041763.1 69684760 70.02% 6025159
NC_041764.1 88894440 66.80% 7556416
NC_041765.1 88510456 68.06% 7514733
NC_041766.1 75322670 69.27% 6431249
NC_041767.1 88174090 68.86% 7579404
NC_041768.1 78095450 68.94% 6713412
NC_041769.1 56858190 71.41% 5001484
NC_041770.1 62292480 65.27% 5270619
NC_041771.1 49584130 66.58% 4194517
NC_041772.1 40202050 68.94% 3575919
NC_041773.1 53458555 69.30% 4625307
NC_041774.1 72925890 47.54% 5981401
NW_021160097.1 920 2.48% 75
NW_021160098.1 4110 10.28% 353
NW_021160099.1 1820 4.50% 160
NW_021160102.1 6560 13.07% 551
NW_021160105.1 4030 7.35% 342
NW_021160106.1 11550 20.80% 959
NW_021160107.1 3760 6.76% 329
NW_021160109.1 16180 19.66% 1377
NW_021160110.1 37850 32.04% 3198
NW_021160111.1 36645 27.55% 2948
NW_021160113.1 73110 62.84% 6594
NW_021160114.1 17720 26.88% 1507
NW_021160116.1 3060 8.65% 258
NW_021160121.1 9220 10.70% 796
NW_021160122.1 14200 15.43% 1176
NW_021160123.1 10700 20.21% 963
NW_021160125.1 510 2.02% 45
NW_021160136.1 5580 9.34% 456
NW_021160140.1 21650 16.62% 1808
NW_021160141.1 15740 11.73% 1316
NW_021160142.1 24140 50.49% 2012
NW_021160144.1 415029 33.75% 33326
NW_021160145.1 2910 10.83% 243
NW_021160147.1 6320 21.04% 529
NW_021160148.1 8340 24.30% 701
NW_021160150.1 5220 13.92% 462
NW_021160155.1 6410 11.75% 557
NW_021160158.1 14690 19.49% 1264
NW_021160159.1 17230 20.08% 1419
NW_021160161.1 144082 19.51% 11902
NW_021160167.1 1940 5.13% 158
NW_021160168.1 1160 2.79% 102
NW_021160175.1 116210 62.77% 10059
NW_021160179.1 5150 13.25% 422
NW_021160182.1 11410 19.64% 951
NW_021160184.1 8430 13.75% 733
NW_021160185.1 2770 4.46% 248
NW_021160186.1 16140 25.03% 1336
NW_021160187.1 4690 6.14% 401
NW_021160188.1 8550 10.31% 700
NW_021160189.1 19740 19.48% 1678
NW_021160190.1 7760 21.72% 635
NW_021160191.1 5460 19.60% 465
NW_021160193.1 500 1.60% 44
NW_021160196.1 24345 52.80% 2098
NW_021160197.1 7600 14.67% 653
NW_021160199.1 7770 13.89% 630
NW_021160200.1 6630 11.24% 558
NW_021160201.1 9100 14.81% 746
NW_021160202.1 5710 8.72% 478
NW_021160203.1 15630 21.65% 1291
NW_021160204.1 11400 15.65% 968
NW_021160205.1 4240 5.79% 369
NW_021160206.1 14690 17.54% 1247
NW_021160207.1 16020 16.21% 1342
NW_021160209.1 53720 8.02% 4524
NW_021160211.1 17650 13.24% 1524
NW_021160220.1 16220 24.31% 1420
NW_021160221.1 12170 17.17% 999
NW_021160222.1 5590 7.32% 474
NW_021160223.1 16400 19.68% 1359
NW_021160225.1 11450 21.27% 942
NW_021160226.1 5710 15.85% 466
NW_021160228.1 4540 9.49% 394
NW_021160229.1 8730 18.20% 710
NW_021160231.1 6710 12.31% 548
NW_021160233.1 9170 14.19% 783
NW_021160234.1 20710 31.60% 1815
NW_021160236.1 9240 11.88% 757
NW_021160237.1 21610 25.21% 1768
NW_021160238.1 21140 20.24% 1778
NW_021160239.1 2700 9.26% 239
NW_021160242.1 4870 16.48% 424
NW_021160243.1 990 3.14% 85
NW_021160244.1 17320 49.18% 1458
NW_021160245.1 5620 12.84% 476
NW_021160248.1 5040 6.74% 439
NW_021160249.1 9100 12.02% 752
NW_021160250.1 3910 6.08% 323
NW_021160251.1 14030 16.62% 1161
NW_021160252.1 24630 27.79% 2104
NW_021160255.1 4140 14.75% 360
NW_021160263.1 3460 6.57% 295
NW_021160266.1 4190 5.58% 372
NW_021160268.1 6900 10.19% 600
NW_021160270.1 3820 10.97% 315
NW_021160271.1 4880 14.04% 431
NW_021160272.1 6370 18.20% 565
NW_021160273.1 4310 10.72% 357
NW_021160277.1 1220 2.72% 114
NW_021160278.1 8320 14.95% 689
NW_021160279.1 14220 21.55% 1238
NW_021160282.1 13160 10.64% 1113
NW_021160284.1 4100 11.78% 353
NW_021160285.1 11510 25.80% 985
NW_021160291.1 2040 4.51% 172
NW_021160293.1 13330 25.23% 1144
NW_021160294.1 18650 23.42% 1539
NW_021160295.1 13040 15.80% 1073
NW_021160297.1 12960 23.05% 1142
NW_021160298.1 3720 13.65% 303
NW_021160300.1 16610 26.67% 1449
NW_021160305.1 680 1.69% 65
NW_021160306.1 9260 23.46% 789
NW_021160307.1 12080 22.93% 975
NW_021160308.1 10270 19.04% 842
NW_021160310.1 24040 41.26% 2126
NW_021160311.1 32720 41.55% 2823
NW_021160312.1 27930 31.59% 2421
NW_021160313.1 33300 35.19% 2867
NW_021160319.1 6830 15.72% 565
NW_021160320.1 8100 15.41% 676
NW_021160324.1 16410 25.80% 1373
NW_021160325.1 7960 12.22% 648
NW_021160326.1 7450 11.44% 617
NW_021160327.1 18599 28.19% 1615
NW_021160328.1 19640 31.01% 1727
NW_021160329.1 8940 16.65% 746
NW_021160338.1 2240 5.97% 203
NW_021160339.1 2610 6.77% 221
NW_021160341.1 8370 18.08% 698
NW_021160347.1 39010 23.60% 3210
NW_021160353.1 9600 23.31% 797
NW_021160354.1 5230 12.46% 451
NW_021160355.1 23150 41.67% 2009
NW_021160356.1 4740 6.21% 413
NW_021160357.1 7080 23.25% 634
NW_021160358.1 11790 29.88% 1010
NW_021160359.1 7230 17.61% 584
NW_021160361.1 7190 15.27% 599
NW_021160362.1 5700 10.62% 471
NW_021160363.1 14100 23.14% 1154
NW_021160364.1 10800 17.47% 917
NW_021160365.1 12450 18.74% 1034
NW_021160366.1 17440 24.47% 1458
NW_021160367.1 25800 33.77% 2228
NW_021160368.1 3870 4.90% 299
NW_021160369.1 4460 5.45% 400
NW_021160370.1 30580 34.17% 2628
NW_021160371.1 6600 7.30% 560
NW_021160372.1 27130 20.18% 2322
NW_021160373.1 14900 25.62% 1244
NW_021160374.1 24110 19.39% 2012
NW_021160375.1 46590 25.34% 3752
NW_021160376.1 154640 17.92% 12556
NW_021160381.1 700 1.44% 64
NW_021160383.1 27317 39.59% 2285
NW_021160384.1 3340 4.19% 293
NW_021160401.1 4760 29.25% 398
NW_021160410.1 8670 52.69% 798
NW_021160417.1 5910 10.44% 482
NW_021160452.1 2620 15.48% 218
NW_021160482.1 190 1.10% 17
NW_021160484.1 4990 28.68% 400
NW_021160495.1 120490 14.63% 10080
NW_021160514.1 3050 16.93% 248
NW_021160523.1 920 5.09% 73
NW_021160525.1 2310 12.73% 188
NW_021160535.1 4900 26.74% 416
NW_021160549.1 3230 17.40% 288
NW_021160573.1 7585 39.85% 665
NW_021160589.1 170 0.88% 14
NW_021160606.1 142920 14.21% 11669
NW_021160623.1 2160 10.92% 177
NW_021160625.1 330 1.67% 33
NW_021160629.1 840 4.22% 75
NW_021160635.1 550 2.74% 46
NW_021160655.1 5970 29.02% 483
NW_021160656.1 2050 10.02% 170
NW_021160678.1 1010 4.86% 88
NW_021160682.1 14645 70.66% 1322
NW_021160688.1 6270 30.71% 541
NW_021160701.1 8886 41.88% 802
NW_021160725.1 2820 13.03% 227
NW_021160726.1 14760 67.87% 1400
NW_021160734.1 960 4.41% 77
NW_021160737.1 20 0.09% 2
NW_021160757.1 320 1.45% 32
NW_021160770.1 14370 63.49% 1367
NW_021160772.1 5520 24.34% 482
NW_021160805.1 10200 43.50% 902
NW_021160821.1 1240 5.18% 96
NW_021160827.1 89870 12.25% 8140
NW_021160832.1 1240 5.15% 108
NW_021160834.1 3580 14.84% 300
NW_021160848.1 400 1.65% 36
NW_021160868.1 210 0.86% 18
NW_021160890.1 5380 21.31% 438
NW_021160903.1 8446 31.89% 726
NW_021160919.1 2000 7.67% 166
NW_021160925.1 1070 4.10% 93
NW_021160946.1 3890 14.69% 332
NW_021160955.1 2230 8.40% 194
NW_021160961.1 4450 16.63% 376
NW_021160976.1 7600 27.92% 626
NW_021160983.1 400 1.47% 34
NW_021160986.1 90 0.33% 8
NW_021161026.1 120 0.43% 10
NW_021161033.1 350 1.22% 31
NW_021161038.1 5370 19.84% 479
NW_021161041.1 3810 13.37% 317
NW_021161043.1 640 2.19% 60
NW_021161046.1 6290 21.32% 571
NW_021161062.1 1580 5.33% 126
NW_021161066.1 15710 52.65% 1383
NW_021161106.1 7320 23.88% 615
NW_021161107.1 2690 8.74% 220
NW_021161113.1 7000 20.76% 585
NW_021161114.1 7550 24.47% 664
NW_021161131.1 200 0.64% 20
NW_021161133.1 10920 7.35% 929
NW_021161138.1 470 1.51% 43
NW_021161152.1 5360 17.03% 459
NW_021161164.1 4990 15.44% 433
NW_021161166.1 9720 29.91% 771
NW_021161184.1 3540 11.98% 290
NW_021161201.1 5450 16.41% 483
NW_021161211.1 3490 10.46% 293
NW_021161213.1 1320 3.97% 115
NW_021161224.1 8300 24.62% 720
NW_021161226.1 7630 22.89% 685
NW_021161241.1 1210 3.53% 99
NW_021161247.1 60 0.18% 6
NW_021161253.1 250 0.72% 21
NW_021161261.1 2810 8.04% 231
NW_021161269.1 14750 42.03% 1217
NW_021161274.1 60 0.17% 3
NW_021161282.1 22430 57.70% 2068
NW_021161303.1 3180 8.83% 274
NW_021161305.1 1250 3.47% 103
NW_021161307.1 1840 6.93% 167
NW_021161312.1 890 2.49% 78
NW_021161320.1 18480 18.81% 1609
NW_021161336.1 3750 10.17% 327
NW_021161338.1 2500 6.72% 214
NW_021161340.1 4210 11.45% 366
NW_021161348.1 12990 34.70% 1124
NW_021161355.1 10030 25.96% 867
NW_021161360.1 1160 3.10% 101
NW_021161364.1 4510 11.81% 388
NW_021161377.1 15219 38.28% 1276
NW_021161379.1 910 2.38% 80
NW_021161380.1 400 1.26% 39
NW_021161385.1 1860 4.79% 162
NW_021161392.1 9760 24.95% 842
NW_021161394.1 6110 15.73% 515
NW_021161396.1 750 1.92% 66
NW_021161399.1 6350 28.97% 570
NW_021161404.1 2250 5.71% 195
NW_021161413.1 5640 14.24% 464
NW_021161421.1 1340 3.37% 107
NW_021161422.1 790 2.00% 71
NW_021161427.1 3630 9.05% 303
NW_021161433.1 1580 3.91% 145
NW_021161437.1 1370 4.56% 116
NW_021161446.1 4070 9.95% 346
NW_021161463.1 150 0.36% 12
NW_021161468.1 3260 7.77% 274
NW_021161470.1 1330 3.17% 116
NW_021161483.1 220 0.52% 19
NW_021161486.1 9250 21.73% 797
NW_021161494.1 2230 5.21% 190
NW_021161497.1 1410 3.28% 128
NW_021161505.1 5700 13.23% 476
NW_021161507.1 7720 17.83% 618
NW_021161508.1 15250 35.34% 1265
NW_021161519.1 16220 36.98% 1351
NW_021161520.1 7710 17.89% 704
NW_021161523.1 3760 8.69% 316
NW_021161525.1 13460 30.57% 1136
NW_021161526.1 8340 18.93% 737
NW_021161532.1 2020 4.54% 175
NW_021161535.1 3360 7.52% 287
NW_021161537.1 14855 33.49% 1292
NW_021161545.1 14690 32.88% 1318
NW_021161552.1 2330 5.48% 200
NW_021161554.1 14040 31.09% 1226
NW_021161561.1 11670 25.83% 1004
NW_021161562.1 12920 28.41% 1090
NW_021161567.1 4580 10.06% 391
NW_021161570.1 300 0.66% 29
NW_021161582.1 14260 31.04% 1225
NW_021161585.1 13900 30.16% 1182
NW_021161590.1 26380 57.34% 2342
NW_021161593.1 18700 40.19% 1570
NW_021161596.1 104010 19.29% 9015
NW_021161601.1 8570 18.22% 700
NW_021161608.1 3210 6.87% 271
NW_021161609.1 1640 3.49% 141
NW_021161614.1 3710 7.78% 308
NW_021161616.1 5770 12.06% 503
NW_021161617.1 860 1.79% 80
NW_021161627.1 5860 17.53% 484
NW_021161633.1 19640 39.75% 1540
NW_021161642.1 4810 9.67% 410
NW_021161648.1 25420 49.96% 2382
NW_021161679.1 5490 10.53% 458
NW_021161680.1 5820 11.25% 490
NW_021161686.1 27750 20.51% 2399
NW_021161694.1 4120 9.06% 344
NW_021161695.1 8090 15.14% 664
NW_021161696.1 4750 8.96% 401
NW_021161699.1 21544 44.55% 1897
NW_021161700.1 1090 2.05% 102
NW_021161713.1 2720 5.05% 235
NW_021161715.1 1270 2.33% 112
NW_021161718.1 13170 24.17% 1099
NW_021161725.1 8070 25.65% 640
NW_021161737.1 6970 12.48% 597
NW_021161743.1 3700 6.61% 309
NW_021161747.1 1230 2.18% 102
NW_021161754.1 29440 51.48% 2615
NW_021161759.1 2000 3.48% 169
NW_021161767.1 13210 12.94% 1114
NW_021161769.1 5770 9.95% 491
NW_021161772.1 7300 9.88% 602
NW_021161784.1 2800 54.39% 244
NW_021161790.1 24250 40.18% 2054
NW_021161794.1 6190 10.24% 527
NW_021161796.1 3860 6.39% 319
NW_021161798.1 6560 13.94% 568
NW_021161830.1 8390 18.75% 678
NW_021161832.1 4390 6.92% 393
NW_021161839.1 4810 7.51% 404
NW_021161842.1 8690 13.32% 742
NW_021161843.1 13870 21.29% 1172
NW_021161845.1 25900 39.61% 2199
NW_021161850.1 415801 37.22% 33876
NW_021161853.1 15020 22.76% 1328
NW_021161857.1 8500 12.81% 720
NW_021161862.1 6540 9.88% 528
NW_021161876.1 15710 23.01% 1292
NW_021161878.1 13450 19.78% 1157
NW_021161881.1 16290 27.05% 1358
NW_021161888.1 15530 22.37% 1406
NW_021161902.1 12860 19.84% 1077
NW_021161927.1 7240 9.68% 613
NW_021161934.1 13320 17.69% 1084
NW_021161939.1 19710 26.02% 1656
NW_021161954.1 13660 17.71% 1159
NW_021161955.1 11790 15.21% 992
NW_021161956.1 21480 28.12% 1860
NW_021161958.1 20210 25.73% 1616
NW_021161961.1 15280 19.54% 1268
NW_021161962.1 3830 4.79% 338
NW_021161965.1 8890 11.25% 760
NW_021161996.1 7010 8.16% 563
NW_021162004.1 1940 6.83% 161
NW_021162007.1 10700 12.18% 899
NW_021162009.1 42980 49.30% 3768
NW_021162025.1 13490 15.13% 1139
NW_021162035.1 6520 6.99% 568
NW_021162047.1 7820 8.17% 678
NW_021162055.1 28310 28.45% 2398
NW_021162083.1 26740 15.52% 2223
NW_021162091.1 22680 20.00% 2029
NW_021162100.1 21990 17.49% 1967
NW_021162108.1 20880 65.51% 1898
NW_021162157.1 4730 7.85% 394
NW_021162185.1 80 0.91% 8
NW_021162208.1 6400 2.57% 583
NW_021162222.1 12410 32.78% 1005
NW_021162226.1 6100 13.97% 527
NW_021162246.1 44670 42.29% 3580
NW_021162251.1 29790 41.71% 2437
NW_021162253.1 320 1.02% 31
NW_021162263.1 1500 5.66% 133
NW_021162265.1 13850 35.83% 1106
NW_021162274.1 45520 44.83% 3855
NW_021162277.1 4250 17.09% 364
NW_021162460.1 160 2.13% 11
NW_021162463.1 1090 14.44% 95
NW_021162495.1 2010 30.51% 180
NW_021162553.1 560 6.47% 46
NW_021162593.1 500 5.38% 45
NW_021162599.1 5945 63.41% 523
NW_021162621.1 1250 12.79% 95
NW_021162643.1 15805 62.19% 1371
NW_021162814.1 680 5.48% 62
NW_021162871.1 1280 9.22% 104
NW_021162949.1 80 0.53% 6
NW_021163002.1 280 1.77% 26
2534 contigs with no values (90136061 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 161716860 1 150 11.74 10
global segment-length histogram

Files

Filename Size md5
Oligo_OPALIN.bw 918.07 MB 8b27e288118f7b0109fe03e353be7cc5
genomic_resource.yaml 1.11 KB 8afb1d9d7e3b8a361d192af71838814f
statistics/