Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/Oligo_PLEKHG1/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for Oligo_PLEKHG1 cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: Oligo_PLEKHG1
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_Oligo_PLEKHG1 float

johansen2025Crossspecies_atac_macaque_Oligo_PLEKHG1

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_Oligo_PLEKHG1 [0.00866, 281]
n
1,923,399,172
mean
0.0669
sd
0.359

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 192339917264.73% 166063066
NC_005943.1 2820 17.02% 275
NC_027914.1 3693690 31.43% 304155
NC_041754.1 160427810 71.74% 14005567
NC_041755.1 132943400 67.76% 11402203
NC_041756.1 126682007 68.37% 10909824
NC_041757.1 114026860 67.09% 9791355
NC_041758.1 116902020 62.41% 9859298
NC_041759.1 119144590 66.53% 10196479
NC_041760.1 119443890 70.32% 10411018
NC_041761.1 97163390 66.70% 8319150
NC_041762.1 89873160 67.01% 7759260
NC_041763.1 72319310 72.67% 6367713
NC_041764.1 89358790 67.15% 7689307
NC_041765.1 89133556 68.54% 7651576
NC_041766.1 76202830 70.08% 6585592
NC_041767.1 89834150 70.15% 7833544
NC_041768.1 79143250 69.86% 6887326
NC_041769.1 59951020 75.29% 5377554
NC_041770.1 61820550 64.78% 5279611
NC_041771.1 50027680 67.17% 4283815
NC_041772.1 41333600 70.88% 3724805
NC_041773.1 55409735 71.83% 4886268
NC_041774.1 73027810 47.61% 6066896
NW_021160097.1 1430 3.86% 116
NW_021160098.1 4170 10.43% 375
NW_021160099.1 2030 5.02% 179
NW_021160102.1 7130 14.21% 588
NW_021160105.1 4780 8.71% 410
NW_021160106.1 13650 24.58% 1156
NW_021160107.1 3980 7.16% 325
NW_021160109.1 21310 25.89% 1864
NW_021160110.1 42370 35.87% 3626
NW_021160111.1 33685 25.32% 2758
NW_021160113.1 76850 66.06% 6961
NW_021160114.1 19480 29.55% 1721
NW_021160116.1 2750 7.77% 232
NW_021160121.1 11130 12.91% 954
NW_021160122.1 14360 15.60% 1201
NW_021160123.1 12090 22.84% 1077
NW_021160125.1 610 2.41% 60
NW_021160136.1 6890 11.53% 573
NW_021160140.1 23000 17.66% 1948
NW_021160141.1 18390 13.71% 1535
NW_021160142.1 25810 53.98% 2188
NW_021160144.1 349569 28.42% 28598
NW_021160145.1 3020 11.24% 249
NW_021160147.1 6930 23.07% 576
NW_021160148.1 9350 27.24% 790
NW_021160150.1 5330 14.21% 472
NW_021160155.1 6790 12.45% 580
NW_021160158.1 16270 21.59% 1400
NW_021160159.1 22710 26.47% 1832
NW_021160161.1 176062 23.84% 14741
NW_021160167.1 1720 4.55% 150
NW_021160168.1 1610 3.87% 135
NW_021160175.1 100790 54.44% 8451
NW_021160179.1 4240 10.91% 350
NW_021160182.1 11750 20.23% 1018
NW_021160184.1 9280 15.14% 791
NW_021160185.1 3840 6.18% 323
NW_021160186.1 18370 28.48% 1551
NW_021160187.1 6050 7.92% 508
NW_021160188.1 9790 11.80% 805
NW_021160189.1 19710 19.45% 1697
NW_021160190.1 6740 18.86% 540
NW_021160191.1 6250 22.43% 517
NW_021160193.1 420 1.35% 38
NW_021160196.1 26605 57.71% 2356
NW_021160197.1 10970 21.17% 936
NW_021160199.1 7630 13.64% 617
NW_021160200.1 7380 12.51% 624
NW_021160201.1 11600 18.88% 944
NW_021160202.1 7260 11.09% 588
NW_021160203.1 17030 23.59% 1443
NW_021160204.1 13480 18.51% 1138
NW_021160205.1 5070 6.92% 449
NW_021160206.1 19800 23.64% 1701
NW_021160207.1 15560 15.75% 1318
NW_021160209.1 57210 8.54% 4839
NW_021160211.1 18560 13.92% 1601
NW_021160220.1 14350 21.51% 1206
NW_021160221.1 12890 18.19% 1076
NW_021160222.1 6020 7.88% 522
NW_021160223.1 17580 21.10% 1473
NW_021160225.1 11570 21.49% 955
NW_021160226.1 5590 15.51% 480
NW_021160228.1 6470 13.53% 541
NW_021160229.1 9370 19.53% 753
NW_021160231.1 7130 13.08% 611
NW_021160233.1 10530 16.29% 905
NW_021160234.1 21980 33.53% 1945
NW_021160236.1 10020 12.88% 841
NW_021160237.1 24920 29.07% 2053
NW_021160238.1 24630 23.58% 2143
NW_021160239.1 2880 9.88% 242
NW_021160242.1 5610 18.98% 480
NW_021160243.1 820 2.60% 74
NW_021160244.1 21090 59.88% 1882
NW_021160245.1 5790 13.23% 478
NW_021160248.1 6260 8.37% 530
NW_021160249.1 10480 13.85% 878
NW_021160250.1 4830 7.51% 413
NW_021160251.1 20280 24.02% 1694
NW_021160252.1 23330 26.32% 1970
NW_021160255.1 4540 16.17% 389
NW_021160263.1 4010 7.62% 344
NW_021160266.1 2920 3.89% 265
NW_021160268.1 4820 7.12% 421
NW_021160270.1 4110 11.80% 333
NW_021160271.1 4830 13.90% 418
NW_021160272.1 6800 19.43% 625
NW_021160273.1 4410 10.97% 365
NW_021160277.1 1580 3.52% 137
NW_021160278.1 8010 14.40% 688
NW_021160279.1 17280 26.19% 1447
NW_021160282.1 15120 12.22% 1277
NW_021160284.1 4590 13.19% 387
NW_021160285.1 12580 28.20% 1125
NW_021160291.1 2010 4.44% 170
NW_021160293.1 16400 31.04% 1395
NW_021160294.1 17190 21.59% 1421
NW_021160295.1 11810 14.31% 995
NW_021160297.1 14760 26.25% 1263
NW_021160298.1 4190 15.38% 346
NW_021160300.1 18300 29.39% 1595
NW_021160305.1 1580 3.92% 138
NW_021160306.1 9610 24.35% 835
NW_021160307.1 13550 25.72% 1109
NW_021160308.1 12380 22.96% 1007
NW_021160310.1 26280 45.11% 2351
NW_021160311.1 36210 45.98% 3120
NW_021160312.1 30420 34.40% 2680
NW_021160313.1 32680 34.54% 2865
NW_021160319.1 7030 16.18% 591
NW_021160320.1 12040 22.91% 1027
NW_021160324.1 21420 33.67% 1802
NW_021160325.1 8880 13.63% 721
NW_021160326.1 7400 11.36% 626
NW_021160327.1 20919 31.71% 1833
NW_021160328.1 21660 34.20% 1911
NW_021160329.1 10620 19.78% 882
NW_021160338.1 3530 9.41% 305
NW_021160339.1 2290 5.94% 199
NW_021160341.1 9140 19.74% 771
NW_021160347.1 43930 26.58% 3648
NW_021160353.1 9450 22.95% 797
NW_021160354.1 5670 13.51% 475
NW_021160355.1 22650 40.77% 1982
NW_021160356.1 5910 7.74% 498
NW_021160357.1 7580 24.89% 672
NW_021160358.1 13830 35.05% 1196
NW_021160359.1 8450 20.58% 703
NW_021160361.1 8640 18.35% 735
NW_021160362.1 6400 11.93% 523
NW_021160363.1 17140 28.13% 1433
NW_021160364.1 12260 19.83% 1071
NW_021160365.1 14360 21.62% 1226
NW_021160366.1 20440 28.68% 1671
NW_021160367.1 29560 38.70% 2567
NW_021160368.1 4360 5.52% 365
NW_021160369.1 5400 6.60% 468
NW_021160370.1 30480 34.06% 2636
NW_021160371.1 7020 7.76% 590
NW_021160372.1 34930 25.98% 3014
NW_021160373.1 16110 27.70% 1365
NW_021160374.1 30470 24.51% 2552
NW_021160375.1 51100 27.80% 4166
NW_021160376.1 161120 18.67% 13145
NW_021160381.1 1000 2.05% 81
NW_021160383.1 26730 38.74% 2260
NW_021160384.1 5440 6.83% 452
NW_021160401.1 4670 28.70% 370
NW_021160410.1 9330 56.70% 846
NW_021160417.1 5880 10.39% 498
NW_021160452.1 2770 16.36% 227
NW_021160482.1 210 1.22% 19
NW_021160484.1 4740 27.24% 382
NW_021160495.1 150660 18.29% 12590
NW_021160514.1 4550 25.25% 385
NW_021160523.1 1070 5.92% 83
NW_021160525.1 2600 14.33% 215
NW_021160535.1 5220 28.48% 432
NW_021160549.1 2410 12.98% 213
NW_021160573.1 8310 43.66% 741
NW_021160589.1 220 1.14% 17
NW_021160606.1 131640 13.09% 10869
NW_021160623.1 1960 9.91% 160
NW_021160625.1 330 1.67% 31
NW_021160629.1 680 3.42% 59
NW_021160635.1 750 3.73% 66
NW_021160655.1 6450 31.35% 533
NW_021160656.1 2160 10.56% 182
NW_021160678.1 1300 6.26% 111
NW_021160682.1 15065 72.69% 1361
NW_021160688.1 7610 37.27% 679
NW_021160701.1 9420 44.40% 846
NW_021160725.1 3010 13.90% 255
NW_021160726.1 15360 70.63% 1461
NW_021160734.1 1100 5.05% 98
NW_021160737.1 40 0.18% 4
NW_021160757.1 180 0.81% 16
NW_021160770.1 14920 65.92% 1429
NW_021160772.1 6130 27.03% 527
NW_021160805.1 9810 41.84% 882
NW_021160821.1 1170 4.89% 99
NW_021160827.1 94410 12.87% 8627
NW_021160832.1 1160 4.82% 97
NW_021160834.1 3740 15.51% 302
NW_021160835.1 40 0.24% 4
NW_021160848.1 430 1.77% 39
NW_021160868.1 320 1.31% 25
NW_021160890.1 4580 18.14% 387
NW_021160903.1 9236 34.87% 797
NW_021160919.1 2480 9.52% 210
NW_021160925.1 1090 4.18% 98
NW_021160946.1 4610 17.41% 396
NW_021160955.1 2840 10.70% 239
NW_021160961.1 4760 17.79% 374
NW_021160976.1 9610 35.31% 795
NW_021160983.1 320 1.17% 25
NW_021160986.1 130 0.48% 11
NW_021161026.1 130 0.47% 11
NW_021161033.1 210 0.73% 20
NW_021161038.1 5550 20.50% 504
NW_021161041.1 3310 11.61% 271
NW_021161043.1 490 1.68% 48
NW_021161046.1 6470 21.93% 588
NW_021161062.1 1320 4.46% 111
NW_021161066.1 15527 52.04% 1389
NW_021161106.1 7850 25.61% 674
NW_021161107.1 3040 9.88% 269
NW_021161113.1 7060 20.93% 606
NW_021161114.1 7510 24.34% 692
NW_021161131.1 240 0.77% 24
NW_021161133.1 11380 7.66% 979
NW_021161138.1 830 2.66% 69
NW_021161152.1 5500 17.48% 479
NW_021161164.1 5730 17.73% 501
NW_021161166.1 10390 31.97% 854
NW_021161184.1 4390 14.85% 375
NW_021161201.1 5430 16.35% 486
NW_021161211.1 4880 14.63% 407
NW_021161213.1 1000 3.00% 90
NW_021161224.1 8230 24.42% 731
NW_021161226.1 7530 22.59% 674
NW_021161241.1 990 2.89% 92
NW_021161247.1 170 0.50% 15
NW_021161253.1 310 0.89% 29
NW_021161261.1 2610 7.47% 224
NW_021161269.1 16350 46.59% 1367
NW_021161274.1 90 0.26% 9
NW_021161282.1 22840 58.75% 2081
NW_021161303.1 3210 8.92% 266
NW_021161305.1 1440 3.99% 127
NW_021161307.1 2380 8.97% 206
NW_021161312.1 1000 2.80% 92
NW_021161320.1 19520 19.87% 1675
NW_021161336.1 4850 13.16% 413
NW_021161338.1 2820 7.58% 239
NW_021161340.1 5860 15.94% 499
NW_021161348.1 12880 34.40% 1108
NW_021161355.1 11070 28.65% 946
NW_021161360.1 1400 3.74% 125
NW_021161364.1 4940 12.94% 438
NW_021161377.1 17490 43.99% 1497
NW_021161379.1 980 2.56% 85
NW_021161380.1 240 0.75% 24
NW_021161385.1 2380 6.13% 199
NW_021161392.1 9770 24.98% 853
NW_021161394.1 6370 16.40% 547
NW_021161396.1 690 1.77% 62
NW_021161399.1 6800 31.02% 610
NW_021161404.1 2600 6.59% 216
NW_021161413.1 6020 15.20% 492
NW_021161421.1 1860 4.67% 151
NW_021161422.1 890 2.25% 78
NW_021161427.1 4330 10.80% 365
NW_021161433.1 1520 3.76% 131
NW_021161437.1 1360 4.53% 121
NW_021161446.1 3710 9.07% 319
NW_021161463.1 150 0.36% 14
NW_021161468.1 3280 7.82% 282
NW_021161470.1 1320 3.15% 120
NW_021161483.1 230 0.54% 20
NW_021161486.1 9000 21.15% 746
NW_021161494.1 1940 4.53% 165
NW_021161497.1 1280 2.98% 118
NW_021161505.1 7050 16.36% 607
NW_021161507.1 7670 17.72% 622
NW_021161508.1 16630 38.54% 1389
NW_021161519.1 18019 41.08% 1500
NW_021161520.1 8070 18.73% 726
NW_021161523.1 3880 8.97% 335
NW_021161525.1 15210 34.55% 1300
NW_021161526.1 8660 19.66% 754
NW_021161532.1 2540 5.71% 218
NW_021161535.1 2980 6.67% 254
NW_021161537.1 15965 35.99% 1405
NW_021161545.1 15919 35.63% 1426
NW_021161552.1 2700 6.35% 232
NW_021161554.1 15480 34.28% 1348
NW_021161561.1 11130 24.63% 956
NW_021161562.1 13180 28.99% 1134
NW_021161567.1 5790 12.72% 484
NW_021161570.1 270 0.60% 27
NW_021161582.1 15560 33.87% 1304
NW_021161585.1 15600 33.85% 1354
NW_021161590.1 26590 57.79% 2370
NW_021161593.1 21510 46.22% 1852
NW_021161596.1 119130 22.09% 10446
NW_021161601.1 10420 22.15% 878
NW_021161608.1 4150 8.89% 350
NW_021161609.1 1570 3.34% 133
NW_021161614.1 5130 10.75% 442
NW_021161616.1 7360 15.38% 636
NW_021161617.1 880 1.83% 77
NW_021161627.1 7110 21.27% 598
NW_021161633.1 23020 46.59% 1904
NW_021161642.1 6510 13.08% 563
NW_021161648.1 26410 51.90% 2473
NW_021161679.1 6590 12.64% 558
NW_021161680.1 5830 11.27% 484
NW_021161686.1 31000 22.91% 2685
NW_021161694.1 4140 9.10% 354
NW_021161695.1 7510 14.05% 614
NW_021161696.1 5200 9.80% 447
NW_021161699.1 23614 48.84% 2095
NW_021161700.1 1620 3.05% 134
NW_021161713.1 1740 3.23% 161
NW_021161715.1 1410 2.59% 127
NW_021161718.1 14890 27.33% 1241
NW_021161725.1 7790 24.76% 657
NW_021161737.1 7900 14.14% 683
NW_021161743.1 4390 7.84% 369
NW_021161747.1 1170 2.07% 103
NW_021161754.1 29080 50.85% 2576
NW_021161759.1 2030 3.53% 165
NW_021161767.1 13000 12.73% 1087
NW_021161769.1 6330 10.92% 531
NW_021161772.1 7470 10.11% 624
NW_021161784.1 2968 57.65% 266
NW_021161790.1 23830 39.49% 2029
NW_021161794.1 4520 7.48% 377
NW_021161796.1 4070 6.74% 351
NW_021161798.1 6500 13.81% 561
NW_021161830.1 8370 18.70% 700
NW_021161832.1 4890 7.71% 421
NW_021161839.1 5910 9.23% 499
NW_021161842.1 7910 12.13% 671
NW_021161843.1 16240 24.93% 1384
NW_021161845.1 26700 40.83% 2294
NW_021161850.1 450491 40.32% 37448
NW_021161853.1 16650 25.23% 1457
NW_021161857.1 7170 10.81% 605
NW_021161862.1 6050 9.14% 522
NW_021161876.1 17750 26.00% 1424
NW_021161878.1 16210 23.84% 1372
NW_021161881.1 17490 29.04% 1442
NW_021161888.1 16470 23.72% 1470
NW_021161902.1 16150 24.92% 1355
NW_021161927.1 8600 11.50% 736
NW_021161934.1 16120 21.40% 1333
NW_021161939.1 21980 29.02% 1876
NW_021161954.1 16470 21.35% 1415
NW_021161955.1 12350 15.93% 1047
NW_021161956.1 22250 29.13% 1971
NW_021161958.1 22950 29.22% 1837
NW_021161961.1 17810 22.77% 1461
NW_021161962.1 4390 5.49% 381
NW_021161965.1 10150 12.84% 882
NW_021161996.1 7850 9.13% 651
NW_021162004.1 2180 7.68% 194
NW_021162007.1 9940 11.31% 830
NW_021162009.1 44880 51.48% 3941
NW_021162025.1 14750 16.54% 1292
NW_021162035.1 6690 7.17% 561
NW_021162047.1 10510 10.98% 859
NW_021162055.1 31970 32.13% 2815
NW_021162083.1 29990 17.41% 2506
NW_021162091.1 24790 21.86% 2185
NW_021162100.1 22850 18.18% 2073
NW_021162108.1 23550 73.89% 2228
NW_021162157.1 5430 9.01% 456
NW_021162185.1 20 0.23% 2
NW_021162208.1 6350 2.55% 585
NW_021162222.1 10520 27.79% 850
NW_021162226.1 4810 11.02% 418
NW_021162246.1 50540 47.84% 4114
NW_021162251.1 37850 53.00% 3167
NW_021162253.1 690 2.20% 65
NW_021162263.1 1720 6.49% 157
NW_021162265.1 14230 36.82% 1179
NW_021162274.1 52080 51.29% 4475
NW_021162277.1 4760 19.14% 406
NW_021162460.1 130 1.73% 12
NW_021162463.1 1250 16.56% 108
NW_021162495.1 2160 32.79% 182
NW_021162553.1 810 9.35% 70
NW_021162593.1 370 3.98% 34
NW_021162599.1 6765 72.16% 611
NW_021162621.1 1290 13.20% 100
NW_021162643.1 16915 66.56% 1495
NW_021162814.1 880 7.10% 72
NW_021162871.1 1300 9.36% 108
NW_021162949.1 90 0.60% 7
NW_021163002.1 330 2.08% 30
2533 contigs with no values (90119066 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 166063066 1 140 11.58 10
global segment-length histogram

Files

Filename Size md5
Oligo_PLEKHG1.bw 948.56 MB f787a20ca61c1bbbacc8a4f602a894e4
genomic_resource.yaml 1.11 KB e21bc35e60aa9e0aa741d0cf900cf49e
statistics/