Resource
| Id | summary/johansen2025Crossspecies/pseudobulk_atac/macaque/SMC/bigwig |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC big wig for SMC cell type from macaque |
| Description | |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| johansen2025Crossspecies_atac_macaque_SMC | float |
johansen2025Crossspecies_atac_macaque_SMC |
RPKM?
|
 |
[2.25, 1.03e+03] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 48737387 | 1.64% | 4576672 |
| NC_005943.1 | 1410 | 8.51% | 127 |
| NC_027914.1 | 46220 | 0.39% | 4541 |
| NC_041754.1 | 4603950 | 2.06% | 429229 |
| NC_041755.1 | 3079060 | 1.57% | 291595 |
| NC_041756.1 | 3139277 | 1.69% | 295781 |
| NC_041757.1 | 2696880 | 1.59% | 255424 |
| NC_041758.1 | 2368170 | 1.26% | 226985 |
| NC_041759.1 | 2668700 | 1.49% | 253050 |
| NC_041760.1 | 3076540 | 1.81% | 288580 |
| NC_041761.1 | 2131190 | 1.46% | 201974 |
| NC_041762.1 | 2257800 | 1.68% | 212494 |
| NC_041763.1 | 2188220 | 2.20% | 203087 |
| NC_041764.1 | 2439840 | 1.83% | 228710 |
| NC_041765.1 | 1925180 | 1.48% | 183016 |
| NC_041766.1 | 1892110 | 1.74% | 178478 |
| NC_041767.1 | 2591080 | 2.02% | 240875 |
| NC_041768.1 | 2012210 | 1.78% | 188177 |
| NC_041769.1 | 2221900 | 2.79% | 203890 |
| NC_041770.1 | 1276970 | 1.34% | 122108 |
| NC_041771.1 | 1013230 | 1.36% | 96824 |
| NC_041772.1 | 2011040 | 3.45% | 181350 |
| NC_041773.1 | 1822710 | 2.36% | 168513 |
| NC_041774.1 | 1166640 | 0.76% | 111747 |
| NW_021160098.1 | 140 | 0.35% | 11 |
| NW_021160102.1 | 100 | 0.20% | 10 |
| NW_021160105.1 | 20 | 0.04% | 2 |
| NW_021160106.1 | 80 | 0.14% | 8 |
| NW_021160107.1 | 40 | 0.07% | 4 |
| NW_021160109.1 | 250 | 0.30% | 21 |
| NW_021160110.1 | 1080 | 0.91% | 94 |
| NW_021160111.1 | 670 | 0.50% | 66 |
| NW_021160113.1 | 7310 | 6.28% | 629 |
| NW_021160114.1 | 500 | 0.76% | 48 |
| NW_021160116.1 | 20 | 0.06% | 2 |
| NW_021160121.1 | 40 | 0.05% | 4 |
| NW_021160122.1 | 240 | 0.26% | 22 |
| NW_021160123.1 | 180 | 0.34% | 18 |
| NW_021160136.1 | 40 | 0.07% | 4 |
| NW_021160140.1 | 250 | 0.19% | 25 |
| NW_021160141.1 | 220 | 0.16% | 22 |
| NW_021160142.1 | 310 | 0.65% | 31 |
| NW_021160144.1 | 5440 | 0.44% | 542 |
| NW_021160145.1 | 20 | 0.07% | 2 |
| NW_021160147.1 | 20 | 0.07% | 2 |
| NW_021160148.1 | 190 | 0.55% | 19 |
| NW_021160150.1 | 350 | 0.93% | 30 |
| NW_021160155.1 | 120 | 0.22% | 12 |
| NW_021160159.1 | 220 | 0.26% | 22 |
| NW_021160161.1 | 3380 | 0.46% | 321 |
| NW_021160167.1 | 40 | 0.11% | 4 |
| NW_021160175.1 | 1310 | 0.71% | 130 |
| NW_021160179.1 | 20 | 0.05% | 2 |
| NW_021160182.1 | 60 | 0.10% | 6 |
| NW_021160184.1 | 60 | 0.10% | 6 |
| NW_021160185.1 | 130 | 0.21% | 12 |
| NW_021160186.1 | 200 | 0.31% | 18 |
| NW_021160187.1 | 20 | 0.03% | 2 |
| NW_021160188.1 | 40 | 0.05% | 4 |
| NW_021160189.1 | 160 | 0.16% | 16 |
| NW_021160190.1 | 60 | 0.17% | 6 |
| NW_021160191.1 | 40 | 0.14% | 4 |
| NW_021160196.1 | 390 | 0.85% | 36 |
| NW_021160197.1 | 170 | 0.33% | 14 |
| NW_021160199.1 | 60 | 0.11% | 6 |
| NW_021160200.1 | 40 | 0.07% | 4 |
| NW_021160201.1 | 200 | 0.33% | 20 |
| NW_021160202.1 | 40 | 0.06% | 4 |
| NW_021160203.1 | 210 | 0.29% | 20 |
| NW_021160204.1 | 260 | 0.36% | 25 |
| NW_021160205.1 | 40 | 0.05% | 4 |
| NW_021160206.1 | 80 | 0.10% | 8 |
| NW_021160207.1 | 220 | 0.22% | 21 |
| NW_021160209.1 | 980 | 0.15% | 97 |
| NW_021160211.1 | 420 | 0.32% | 41 |
| NW_021160220.1 | 200 | 0.30% | 20 |
| NW_021160221.1 | 180 | 0.25% | 18 |
| NW_021160222.1 | 60 | 0.08% | 6 |
| NW_021160223.1 | 310 | 0.37% | 30 |
| NW_021160225.1 | 120 | 0.22% | 12 |
| NW_021160226.1 | 220 | 0.61% | 21 |
| NW_021160228.1 | 70 | 0.15% | 7 |
| NW_021160229.1 | 270 | 0.56% | 26 |
| NW_021160231.1 | 110 | 0.20% | 11 |
| NW_021160233.1 | 40 | 0.06% | 4 |
| NW_021160234.1 | 1010 | 1.54% | 88 |
| NW_021160236.1 | 100 | 0.13% | 10 |
| NW_021160237.1 | 240 | 0.28% | 24 |
| NW_021160238.1 | 390 | 0.37% | 38 |
| NW_021160239.1 | 320 | 1.10% | 31 |
| NW_021160242.1 | 110 | 0.37% | 8 |
| NW_021160243.1 | 20 | 0.06% | 2 |
| NW_021160244.1 | 560 | 1.59% | 55 |
| NW_021160245.1 | 80 | 0.18% | 8 |
| NW_021160248.1 | 60 | 0.08% | 6 |
| NW_021160249.1 | 270 | 0.36% | 27 |
| NW_021160250.1 | 140 | 0.22% | 14 |
| NW_021160251.1 | 80 | 0.09% | 8 |
| NW_021160252.1 | 160 | 0.18% | 15 |
| NW_021160255.1 | 100 | 0.36% | 10 |
| NW_021160263.1 | 20 | 0.04% | 2 |
| NW_021160268.1 | 40 | 0.06% | 4 |
| NW_021160270.1 | 60 | 0.17% | 6 |
| NW_021160271.1 | 110 | 0.32% | 10 |
| NW_021160272.1 | 320 | 0.91% | 30 |
| NW_021160273.1 | 60 | 0.15% | 6 |
| NW_021160277.1 | 40 | 0.09% | 2 |
| NW_021160278.1 | 100 | 0.18% | 10 |
| NW_021160279.1 | 290 | 0.44% | 28 |
| NW_021160282.1 | 410 | 0.33% | 41 |
| NW_021160284.1 | 20 | 0.06% | 2 |
| NW_021160285.1 | 20 | 0.04% | 2 |
| NW_021160291.1 | 40 | 0.09% | 4 |
| NW_021160293.1 | 320 | 0.61% | 30 |
| NW_021160294.1 | 180 | 0.23% | 18 |
| NW_021160295.1 | 150 | 0.18% | 15 |
| NW_021160297.1 | 210 | 0.37% | 20 |
| NW_021160298.1 | 20 | 0.07% | 2 |
| NW_021160300.1 | 290 | 0.47% | 27 |
| NW_021160305.1 | 20 | 0.05% | 2 |
| NW_021160306.1 | 100 | 0.25% | 10 |
| NW_021160307.1 | 120 | 0.23% | 12 |
| NW_021160308.1 | 180 | 0.33% | 17 |
| NW_021160310.1 | 1420 | 2.44% | 129 |
| NW_021160311.1 | 750 | 0.95% | 73 |
| NW_021160312.1 | 360 | 0.41% | 32 |
| NW_021160313.1 | 130 | 0.14% | 13 |
| NW_021160320.1 | 50 | 0.10% | 5 |
| NW_021160324.1 | 300 | 0.47% | 29 |
| NW_021160325.1 | 60 | 0.09% | 6 |
| NW_021160326.1 | 140 | 0.21% | 14 |
| NW_021160327.1 | 330 | 0.50% | 33 |
| NW_021160328.1 | 870 | 1.37% | 77 |
| NW_021160329.1 | 60 | 0.11% | 6 |
| NW_021160338.1 | 40 | 0.11% | 4 |
| NW_021160339.1 | 80 | 0.21% | 8 |
| NW_021160341.1 | 100 | 0.22% | 10 |
| NW_021160347.1 | 450 | 0.27% | 43 |
| NW_021160353.1 | 200 | 0.49% | 20 |
| NW_021160354.1 | 140 | 0.33% | 14 |
| NW_021160355.1 | 80 | 0.14% | 8 |
| NW_021160356.1 | 60 | 0.08% | 6 |
| NW_021160357.1 | 20 | 0.07% | 2 |
| NW_021160358.1 | 180 | 0.46% | 16 |
| NW_021160359.1 | 300 | 0.73% | 29 |
| NW_021160362.1 | 210 | 0.39% | 19 |
| NW_021160363.1 | 280 | 0.46% | 26 |
| NW_021160364.1 | 220 | 0.36% | 20 |
| NW_021160365.1 | 270 | 0.41% | 27 |
| NW_021160366.1 | 260 | 0.36% | 23 |
| NW_021160367.1 | 830 | 1.09% | 77 |
| NW_021160368.1 | 80 | 0.10% | 8 |
| NW_021160369.1 | 140 | 0.17% | 14 |
| NW_021160370.1 | 220 | 0.25% | 21 |
| NW_021160371.1 | 140 | 0.15% | 14 |
| NW_021160372.1 | 920 | 0.68% | 88 |
| NW_021160373.1 | 260 | 0.45% | 26 |
| NW_021160374.1 | 220 | 0.18% | 21 |
| NW_021160375.1 | 500 | 0.27% | 49 |
| NW_021160376.1 | 3310 | 0.38% | 326 |
| NW_021160383.1 | 460 | 0.67% | 46 |
| NW_021160384.1 | 40 | 0.05% | 4 |
| NW_021160401.1 | 60 | 0.37% | 6 |
| NW_021160410.1 | 60 | 0.36% | 6 |
| NW_021160417.1 | 60 | 0.11% | 6 |
| NW_021160452.1 | 60 | 0.35% | 5 |
| NW_021160484.1 | 90 | 0.52% | 9 |
| NW_021160495.1 | 3020 | 0.37% | 298 |
| NW_021160514.1 | 20 | 0.11% | 2 |
| NW_021160523.1 | 20 | 0.11% | 2 |
| NW_021160525.1 | 40 | 0.22% | 4 |
| NW_021160535.1 | 80 | 0.44% | 8 |
| NW_021160549.1 | 20 | 0.11% | 2 |
| NW_021160573.1 | 190 | 1.00% | 19 |
| NW_021160606.1 | 1920 | 0.19% | 185 |
| NW_021160623.1 | 20 | 0.10% | 2 |
| NW_021160629.1 | 20 | 0.10% | 2 |
| NW_021160655.1 | 230 | 1.12% | 22 |
| NW_021160656.1 | 20 | 0.10% | 2 |
| NW_021160682.1 | 500 | 2.41% | 49 |
| NW_021160688.1 | 430 | 2.11% | 38 |
| NW_021160701.1 | 510 | 2.40% | 46 |
| NW_021160726.1 | 1720 | 7.91% | 147 |
| NW_021160770.1 | 2200 | 9.72% | 186 |
| NW_021160772.1 | 80 | 0.35% | 7 |
| NW_021160805.1 | 20 | 0.09% | 2 |
| NW_021160821.1 | 20 | 0.08% | 2 |
| NW_021160827.1 | 1950 | 0.27% | 190 |
| NW_021160834.1 | 40 | 0.17% | 4 |
| NW_021160890.1 | 60 | 0.24% | 6 |
| NW_021160903.1 | 130 | 0.49% | 13 |
| NW_021160946.1 | 250 | 0.94% | 23 |
| NW_021160955.1 | 20 | 0.08% | 2 |
| NW_021160976.1 | 80 | 0.29% | 8 |
| NW_021161038.1 | 310 | 1.15% | 27 |
| NW_021161041.1 | 60 | 0.21% | 6 |
| NW_021161046.1 | 300 | 1.02% | 28 |
| NW_021161062.1 | 20 | 0.07% | 2 |
| NW_021161066.1 | 120 | 0.40% | 12 |
| NW_021161106.1 | 140 | 0.46% | 14 |
| NW_021161107.1 | 20 | 0.07% | 2 |
| NW_021161113.1 | 60 | 0.18% | 6 |
| NW_021161114.1 | 660 | 2.14% | 57 |
| NW_021161133.1 | 40 | 0.03% | 4 |
| NW_021161152.1 | 20 | 0.06% | 2 |
| NW_021161164.1 | 80 | 0.25% | 8 |
| NW_021161166.1 | 290 | 0.89% | 29 |
| NW_021161184.1 | 20 | 0.07% | 2 |
| NW_021161201.1 | 20 | 0.06% | 2 |
| NW_021161211.1 | 60 | 0.18% | 6 |
| NW_021161224.1 | 210 | 0.62% | 18 |
| NW_021161226.1 | 240 | 0.72% | 24 |
| NW_021161261.1 | 60 | 0.17% | 6 |
| NW_021161269.1 | 80 | 0.23% | 8 |
| NW_021161282.1 | 160 | 0.41% | 15 |
| NW_021161303.1 | 40 | 0.11% | 4 |
| NW_021161305.1 | 20 | 0.06% | 2 |
| NW_021161312.1 | 20 | 0.06% | 2 |
| NW_021161320.1 | 240 | 0.24% | 24 |
| NW_021161336.1 | 40 | 0.11% | 4 |
| NW_021161338.1 | 40 | 0.11% | 4 |
| NW_021161340.1 | 40 | 0.11% | 4 |
| NW_021161348.1 | 60 | 0.16% | 6 |
| NW_021161355.1 | 250 | 0.65% | 25 |
| NW_021161360.1 | 40 | 0.11% | 4 |
| NW_021161364.1 | 40 | 0.10% | 4 |
| NW_021161377.1 | 290 | 0.73% | 29 |
| NW_021161380.1 | 20 | 0.06% | 2 |
| NW_021161385.1 | 20 | 0.05% | 2 |
| NW_021161392.1 | 390 | 1.00% | 35 |
| NW_021161394.1 | 40 | 0.10% | 4 |
| NW_021161399.1 | 20 | 0.09% | 2 |
| NW_021161413.1 | 40 | 0.10% | 4 |
| NW_021161427.1 | 70 | 0.17% | 7 |
| NW_021161433.1 | 20 | 0.05% | 2 |
| NW_021161437.1 | 20 | 0.07% | 2 |
| NW_021161468.1 | 40 | 0.10% | 4 |
| NW_021161486.1 | 220 | 0.52% | 22 |
| NW_021161507.1 | 100 | 0.23% | 10 |
| NW_021161508.1 | 80 | 0.19% | 8 |
| NW_021161519.1 | 180 | 0.41% | 17 |
| NW_021161520.1 | 1270 | 2.95% | 104 |
| NW_021161523.1 | 80 | 0.18% | 8 |
| NW_021161525.1 | 120 | 0.27% | 12 |
| NW_021161526.1 | 80 | 0.18% | 8 |
| NW_021161537.1 | 510 | 1.15% | 47 |
| NW_021161545.1 | 640 | 1.43% | 59 |
| NW_021161552.1 | 20 | 0.05% | 2 |
| NW_021161554.1 | 120 | 0.27% | 12 |
| NW_021161561.1 | 80 | 0.18% | 8 |
| NW_021161562.1 | 350 | 0.77% | 35 |
| NW_021161567.1 | 20 | 0.04% | 2 |
| NW_021161582.1 | 180 | 0.39% | 18 |
| NW_021161585.1 | 530 | 1.15% | 47 |
| NW_021161590.1 | 760 | 1.65% | 73 |
| NW_021161593.1 | 340 | 0.73% | 34 |
| NW_021161596.1 | 1690 | 0.31% | 161 |
| NW_021161601.1 | 100 | 0.21% | 9 |
| NW_021161608.1 | 60 | 0.13% | 6 |
| NW_021161609.1 | 20 | 0.04% | 2 |
| NW_021161614.1 | 40 | 0.08% | 4 |
| NW_021161616.1 | 1560 | 3.26% | 141 |
| NW_021161627.1 | 120 | 0.36% | 12 |
| NW_021161633.1 | 140 | 0.28% | 14 |
| NW_021161642.1 | 40 | 0.08% | 4 |
| NW_021161648.1 | 1090 | 2.14% | 99 |
| NW_021161679.1 | 40 | 0.08% | 4 |
| NW_021161680.1 | 170 | 0.33% | 16 |
| NW_021161686.1 | 340 | 0.25% | 34 |
| NW_021161694.1 | 80 | 0.18% | 8 |
| NW_021161695.1 | 40 | 0.07% | 4 |
| NW_021161696.1 | 20 | 0.04% | 2 |
| NW_021161699.1 | 120 | 0.25% | 12 |
| NW_021161700.1 | 20 | 0.04% | 2 |
| NW_021161715.1 | 20 | 0.04% | 2 |
| NW_021161718.1 | 220 | 0.40% | 22 |
| NW_021161725.1 | 60 | 0.19% | 6 |
| NW_021161737.1 | 20 | 0.04% | 2 |
| NW_021161743.1 | 60 | 0.11% | 6 |
| NW_021161754.1 | 320 | 0.56% | 31 |
| NW_021161767.1 | 20 | 0.02% | 2 |
| NW_021161769.1 | 80 | 0.14% | 6 |
| NW_021161772.1 | 20 | 0.03% | 2 |
| NW_021161790.1 | 80 | 0.13% | 8 |
| NW_021161794.1 | 40 | 0.07% | 4 |
| NW_021161796.1 | 60 | 0.10% | 5 |
| NW_021161798.1 | 150 | 0.32% | 15 |
| NW_021161830.1 | 120 | 0.27% | 12 |
| NW_021161832.1 | 40 | 0.06% | 4 |
| NW_021161839.1 | 40 | 0.06% | 4 |
| NW_021161842.1 | 100 | 0.15% | 10 |
| NW_021161843.1 | 90 | 0.14% | 9 |
| NW_021161845.1 | 760 | 1.16% | 60 |
| NW_021161850.1 | 12750 | 1.14% | 1216 |
| NW_021161853.1 | 600 | 0.91% | 58 |
| NW_021161857.1 | 100 | 0.15% | 10 |
| NW_021161862.1 | 40 | 0.06% | 4 |
| NW_021161876.1 | 40 | 0.06% | 4 |
| NW_021161878.1 | 220 | 0.32% | 22 |
| NW_021161881.1 | 40 | 0.07% | 4 |
| NW_021161888.1 | 360 | 0.52% | 36 |
| NW_021161902.1 | 100 | 0.15% | 10 |
| NW_021161927.1 | 20 | 0.03% | 2 |
| NW_021161934.1 | 40 | 0.05% | 4 |
| NW_021161939.1 | 440 | 0.58% | 40 |
| NW_021161954.1 | 40 | 0.05% | 4 |
| NW_021161955.1 | 200 | 0.26% | 20 |
| NW_021161956.1 | 710 | 0.93% | 64 |
| NW_021161958.1 | 300 | 0.38% | 30 |
| NW_021161961.1 | 180 | 0.23% | 18 |
| NW_021161962.1 | 60 | 0.08% | 6 |
| NW_021161965.1 | 260 | 0.33% | 26 |
| NW_021161996.1 | 20 | 0.02% | 2 |
| NW_021162004.1 | 20 | 0.07% | 2 |
| NW_021162007.1 | 140 | 0.16% | 14 |
| NW_021162009.1 | 2080 | 2.39% | 193 |
| NW_021162025.1 | 380 | 0.43% | 34 |
| NW_021162035.1 | 60 | 0.06% | 6 |
| NW_021162047.1 | 40 | 0.04% | 4 |
| NW_021162055.1 | 460 | 0.46% | 46 |
| NW_021162083.1 | 400 | 0.23% | 40 |
| NW_021162091.1 | 740 | 0.65% | 72 |
| NW_021162100.1 | 1140 | 0.91% | 99 |
| NW_021162108.1 | 180 | 0.56% | 18 |
| NW_021162157.1 | 90 | 0.15% | 9 |
| NW_021162222.1 | 20 | 0.05% | 2 |
| NW_021162226.1 | 90 | 0.21% | 9 |
| NW_021162246.1 | 530 | 0.50% | 53 |
| NW_021162251.1 | 880 | 1.23% | 87 |
| NW_021162263.1 | 40 | 0.15% | 3 |
| NW_021162265.1 | 100 | 0.26% | 9 |
| NW_021162274.1 | 920 | 0.91% | 90 |
| NW_021162277.1 | 20 | 0.08% | 2 |
| NW_021162593.1 | 20 | 0.22% | 2 |
| NW_021162599.1 | 170 | 1.81% | 17 |
| NW_021162643.1 | 250 | 0.98% | 24 |
| NW_021162814.1 | 70 | 0.56% | 7 |
| NW_021162871.1 | 20 | 0.14% | 2 |
| 2602 contigs with no values (92545115 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 4576672 | 7 | 120 | 10.65 | 10 |
×
Files
| Filename | Size | md5 |
|---|---|---|
| SMC.bw | 39.65 MB | f4d2a844ca000c8480a17ff9749682a2 |
| genomic_resource.yaml | 1.07 KB | 7c4f5ea057a5d03ec4f0c6c54a222380 |
| statistics/ |