Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/SN-VTR-HTH_GATA3-TCF7L2_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for SN-VTR-HTH_GATA3-TCF7L2_GABA cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: SN-VTR-HTH_GATA3-TCF7L2_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_SN-VTR-HTH_GATA3-TCF7L2_GABA float

johansen2025Crossspecies_atac_macaque_SN-VTR-HTH_GATA3-TCF7L2_GABA

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_SN-VTR-HTH_GATA3-TCF7L2_GABA [0.133, 73.8]
n
911,438,766
mean
0.259
sd
0.363

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 91143876630.67% 74575299
NC_005943.1 1800 10.87% 173
NC_027914.1 894610 7.61% 79111
NC_041754.1 79670850 35.63% 6497227
NC_041755.1 61466710 31.33% 5026209
NC_041756.1 59908810 32.33% 4899550
NC_041757.1 51356190 30.22% 4206344
NC_041758.1 49524030 26.44% 4088677
NC_041759.1 53030970 29.61% 4353318
NC_041760.1 59141540 34.82% 4821564
NC_041761.1 44459850 30.52% 3639862
NC_041762.1 45489720 33.92% 3705501
NC_041763.1 40054020 40.25% 3250776
NC_041764.1 43841270 32.95% 3580106
NC_041765.1 39967006 30.73% 3274086
NC_041766.1 35881340 33.00% 2928325
NC_041767.1 45327580 35.40% 3699757
NC_041768.1 37659770 33.24% 3078971
NC_041769.1 33377640 41.92% 2712913
NC_041770.1 26447960 27.71% 2171538
NC_041771.1 22549410 30.28% 1844048
NC_041772.1 22877100 39.23% 1864220
NC_041773.1 30423535 39.44% 2473709
NC_041774.1 26087680 17.01% 2209093
NW_021160097.1 230 0.62% 19
NW_021160098.1 1090 2.73% 100
NW_021160099.1 620 1.53% 60
NW_021160102.1 2350 4.68% 208
NW_021160105.1 1360 2.48% 120
NW_021160106.1 3680 6.63% 305
NW_021160107.1 1500 2.70% 134
NW_021160109.1 4980 6.05% 438
NW_021160110.1 12400 10.50% 1053
NW_021160111.1 14110 10.61% 1244
NW_021160113.1 39440 33.90% 3336
NW_021160114.1 8130 12.33% 684
NW_021160116.1 490 1.38% 46
NW_021160121.1 1520 1.76% 133
NW_021160122.1 3350 3.64% 309
NW_021160123.1 3360 6.35% 289
NW_021160125.1 100 0.40% 10
NW_021160136.1 3180 5.32% 267
NW_021160140.1 5680 4.36% 499
NW_021160141.1 5250 3.91% 472
NW_021160142.1 13320 27.86% 1059
NW_021160144.1 66960 5.44% 6129
NW_021160145.1 1030 3.83% 89
NW_021160147.1 1470 4.89% 130
NW_021160148.1 4710 13.72% 398
NW_021160150.1 2170 5.79% 189
NW_021160155.1 2720 4.99% 239
NW_021160158.1 2540 3.37% 212
NW_021160159.1 6230 7.26% 555
NW_021160161.1 69690 9.44% 5886
NW_021160167.1 500 1.32% 44
NW_021160168.1 460 1.10% 41
NW_021160175.1 51890 28.03% 4222
NW_021160179.1 1490 3.83% 133
NW_021160182.1 5650 9.73% 487
NW_021160184.1 1830 2.99% 158
NW_021160185.1 1110 1.79% 102
NW_021160186.1 6090 9.44% 523
NW_021160187.1 1230 1.61% 108
NW_021160188.1 4770 5.75% 394
NW_021160189.1 4330 4.27% 387
NW_021160190.1 4430 12.40% 358
NW_021160191.1 850 3.05% 74
NW_021160193.1 230 0.74% 23
NW_021160196.1 8225 17.84% 683
NW_021160197.1 3030 5.85% 267
NW_021160199.1 1910 3.42% 172
NW_021160200.1 1650 2.80% 151
NW_021160201.1 6320 10.29% 527
NW_021160202.1 1890 2.89% 157
NW_021160203.1 4570 6.33% 397
NW_021160204.1 5400 7.41% 463
NW_021160205.1 2170 2.96% 192
NW_021160206.1 3760 4.49% 324
NW_021160207.1 3850 3.90% 335
NW_021160209.1 14810 2.21% 1271
NW_021160211.1 6220 4.67% 540
NW_021160220.1 7520 11.27% 599
NW_021160221.1 2700 3.81% 243
NW_021160222.1 1190 1.56% 107
NW_021160223.1 11740 14.09% 976
NW_021160225.1 4160 7.73% 354
NW_021160226.1 2250 6.24% 194
NW_021160228.1 1440 3.01% 134
NW_021160229.1 1920 4.00% 175
NW_021160231.1 2250 4.13% 199
NW_021160233.1 2770 4.29% 228
NW_021160234.1 14000 21.36% 1159
NW_021160236.1 4640 5.96% 416
NW_021160237.1 15360 17.92% 1293
NW_021160238.1 10640 10.19% 916
NW_021160239.1 1210 4.15% 112
NW_021160242.1 1290 4.37% 115
NW_021160243.1 570 1.81% 51
NW_021160244.1 17200 48.84% 1450
NW_021160245.1 910 2.08% 85
NW_021160248.1 1260 1.69% 118
NW_021160249.1 4120 5.44% 351
NW_021160250.1 1880 2.92% 158
NW_021160251.1 5330 6.31% 444
NW_021160252.1 7760 8.76% 651
NW_021160255.1 1820 6.48% 144
NW_021160263.1 1040 1.98% 91
NW_021160266.1 1620 2.16% 155
NW_021160268.1 2350 3.47% 212
NW_021160270.1 2830 8.13% 235
NW_021160271.1 1060 3.05% 90
NW_021160272.1 3410 9.74% 282
NW_021160273.1 1400 3.48% 126
NW_021160277.1 370 0.82% 37
NW_021160278.1 3160 5.68% 275
NW_021160279.1 3730 5.65% 317
NW_021160282.1 8510 6.88% 721
NW_021160284.1 660 1.90% 59
NW_021160285.1 1760 3.95% 147
NW_021160291.1 340 0.75% 32
NW_021160293.1 4770 9.03% 412
NW_021160294.1 6220 7.81% 538
NW_021160295.1 2630 3.19% 238
NW_021160297.1 3260 5.80% 280
NW_021160298.1 2190 8.04% 185
NW_021160300.1 6630 10.65% 525
NW_021160305.1 990 2.46% 83
NW_021160306.1 1720 4.36% 140
NW_021160307.1 3040 5.77% 262
NW_021160308.1 3000 5.56% 262
NW_021160310.1 17500 30.04% 1498
NW_021160311.1 8920 11.33% 772
NW_021160312.1 7580 8.57% 665
NW_021160313.1 9010 9.52% 757
NW_021160319.1 2920 6.72% 246
NW_021160320.1 3240 6.17% 276
NW_021160324.1 5830 9.17% 488
NW_021160325.1 6270 9.62% 535
NW_021160326.1 2280 3.50% 199
NW_021160327.1 4860 7.37% 409
NW_021160328.1 9170 14.48% 765
NW_021160329.1 5070 9.44% 400
NW_021160338.1 1180 3.14% 107
NW_021160339.1 340 0.88% 32
NW_021160341.1 3440 7.43% 290
NW_021160347.1 9910 6.00% 856
NW_021160353.1 3600 8.74% 294
NW_021160354.1 1000 2.38% 90
NW_021160355.1 1900 3.42% 170
NW_021160356.1 2650 3.47% 234
NW_021160357.1 810 2.66% 72
NW_021160358.1 2990 7.58% 259
NW_021160359.1 3500 8.52% 293
NW_021160361.1 920 1.95% 80
NW_021160362.1 1410 2.63% 127
NW_021160363.1 3820 6.27% 337
NW_021160364.1 4260 6.89% 369
NW_021160365.1 4930 7.42% 413
NW_021160366.1 4320 6.06% 382
NW_021160367.1 10400 13.61% 867
NW_021160368.1 1480 1.87% 132
NW_021160369.1 2220 2.71% 200
NW_021160370.1 6230 6.96% 524
NW_021160371.1 2620 2.90% 239
NW_021160372.1 12800 9.52% 1085
NW_021160373.1 8120 13.96% 670
NW_021160374.1 7770 6.25% 697
NW_021160375.1 19570 10.65% 1664
NW_021160376.1 70440 8.16% 5972
NW_021160381.1 390 0.80% 33
NW_021160383.1 14580 21.13% 1185
NW_021160384.1 1350 1.70% 123
NW_021160401.1 600 3.69% 56
NW_021160410.1 5630 34.21% 464
NW_021160417.1 970 1.71% 88
NW_021160452.1 1180 6.97% 103
NW_021160482.1 270 1.56% 23
NW_021160484.1 1210 6.95% 94
NW_021160495.1 88450 10.74% 7603
NW_021160514.1 980 5.44% 85
NW_021160523.1 320 1.77% 26
NW_021160525.1 1040 5.73% 90
NW_021160535.1 1570 8.57% 135
NW_021160549.1 1660 8.94% 137
NW_021160573.1 3070 16.13% 252
NW_021160589.1 60 0.31% 6
NW_021160606.1 50630 5.03% 4367
NW_021160623.1 270 1.36% 24
NW_021160625.1 130 0.66% 13
NW_021160629.1 150 0.75% 14
NW_021160635.1 380 1.89% 33
NW_021160655.1 1750 8.51% 156
NW_021160656.1 840 4.11% 74
NW_021160678.1 180 0.87% 18
NW_021160682.1 7460 36.00% 600
NW_021160688.1 2610 12.78% 224
NW_021160701.1 4660 21.96% 394
NW_021160725.1 310 1.43% 31
NW_021160726.1 11970 55.04% 1099
NW_021160734.1 360 1.65% 30
NW_021160737.1 20 0.09% 2
NW_021160757.1 30 0.14% 3
NW_021160770.1 11270 49.80% 1024
NW_021160772.1 1010 4.45% 90
NW_021160805.1 3960 16.89% 334
NW_021160821.1 200 0.84% 20
NW_021160827.1 32780 4.47% 2754
NW_021160832.1 210 0.87% 21
NW_021160834.1 950 3.94% 87
NW_021160835.1 20 0.12% 2
NW_021160848.1 220 0.91% 21
NW_021160868.1 20 0.08% 2
NW_021160890.1 850 3.37% 79
NW_021160903.1 3220 12.16% 254
NW_021160919.1 590 2.26% 52
NW_021160925.1 150 0.58% 15
NW_021160946.1 1610 6.08% 146
NW_021160955.1 1040 3.92% 95
NW_021160961.1 1010 3.77% 95
NW_021160976.1 3770 13.85% 299
NW_021160983.1 70 0.26% 7
NW_021160986.1 40 0.15% 4
NW_021161026.1 60 0.22% 6
NW_021161033.1 40 0.14% 4
NW_021161038.1 890 3.29% 76
NW_021161041.1 790 2.77% 72
NW_021161043.1 380 1.30% 35
NW_021161046.1 2310 7.83% 190
NW_021161062.1 130 0.44% 13
NW_021161066.1 4100 13.74% 350
NW_021161106.1 3100 10.11% 257
NW_021161107.1 630 2.05% 57
NW_021161113.1 3490 10.35% 310
NW_021161114.1 3550 11.51% 314
NW_021161131.1 80 0.26% 7
NW_021161133.1 2370 1.60% 221
NW_021161138.1 260 0.83% 20
NW_021161152.1 1820 5.78% 154
NW_021161164.1 1730 5.35% 150
NW_021161166.1 3230 9.94% 280
NW_021161184.1 620 2.10% 49
NW_021161201.1 1210 3.64% 110
NW_021161211.1 1740 5.21% 159
NW_021161213.1 170 0.51% 17
NW_021161224.1 3730 11.07% 306
NW_021161226.1 2720 8.16% 225
NW_021161241.1 240 0.70% 24
NW_021161247.1 20 0.06% 2
NW_021161253.1 100 0.29% 10
NW_021161261.1 330 0.94% 32
NW_021161269.1 4750 13.53% 414
NW_021161274.1 20 0.06% 2
NW_021161282.1 12100 31.12% 1014
NW_021161303.1 410 1.14% 40
NW_021161305.1 360 1.00% 30
NW_021161307.1 580 2.19% 55
NW_021161312.1 100 0.28% 10
NW_021161320.1 4180 4.26% 367
NW_021161336.1 2850 7.73% 248
NW_021161338.1 510 1.37% 50
NW_021161340.1 1010 2.75% 87
NW_021161348.1 2500 6.68% 202
NW_021161355.1 2790 7.22% 241
NW_021161360.1 270 0.72% 21
NW_021161364.1 1300 3.40% 112
NW_021161377.1 7860 19.77% 666
NW_021161379.1 60 0.16% 6
NW_021161380.1 120 0.38% 12
NW_021161385.1 220 0.57% 19
NW_021161392.1 5850 14.96% 526
NW_021161394.1 2310 5.95% 190
NW_021161396.1 80 0.20% 8
NW_021161399.1 1720 7.85% 144
NW_021161404.1 290 0.74% 28
NW_021161413.1 960 2.42% 91
NW_021161421.1 290 0.73% 27
NW_021161422.1 300 0.76% 26
NW_021161427.1 1320 3.29% 116
NW_021161433.1 180 0.44% 17
NW_021161437.1 460 1.53% 42
NW_021161446.1 580 1.42% 58
NW_021161463.1 40 0.10% 4
NW_021161468.1 1170 2.79% 103
NW_021161470.1 250 0.60% 22
NW_021161483.1 20 0.05% 2
NW_021161486.1 4010 9.42% 334
NW_021161494.1 450 1.05% 39
NW_021161497.1 490 1.14% 46
NW_021161505.1 3450 8.01% 297
NW_021161507.1 3160 7.30% 277
NW_021161508.1 8250 19.12% 679
NW_021161519.1 2960 6.75% 257
NW_021161520.1 2290 5.31% 200
NW_021161523.1 1120 2.59% 102
NW_021161525.1 5090 11.56% 416
NW_021161526.1 4570 10.37% 399
NW_021161532.1 710 1.60% 64
NW_021161535.1 460 1.03% 44
NW_021161537.1 8760 19.75% 730
NW_021161545.1 10240 22.92% 898
NW_021161552.1 350 0.82% 31
NW_021161554.1 1650 3.65% 151
NW_021161561.1 4700 10.40% 386
NW_021161562.1 5320 11.70% 431
NW_021161567.1 860 1.89% 78
NW_021161570.1 70 0.15% 7
NW_021161582.1 7110 15.48% 597
NW_021161585.1 7800 16.93% 636
NW_021161590.1 11960 25.99% 990
NW_021161593.1 8930 19.19% 750
NW_021161596.1 30230 5.61% 2572
NW_021161601.1 2470 5.25% 210
NW_021161608.1 690 1.48% 58
NW_021161609.1 360 0.77% 30
NW_021161614.1 800 1.68% 67
NW_021161616.1 4080 8.53% 376
NW_021161617.1 150 0.31% 15
NW_021161627.1 2780 8.31% 236
NW_021161633.1 13550 27.42% 1100
NW_021161642.1 2360 4.74% 207
NW_021161648.1 13740 27.00% 1159
NW_021161679.1 3280 6.29% 262
NW_021161680.1 1320 2.55% 117
NW_021161686.1 10460 7.73% 880
NW_021161694.1 910 2.00% 79
NW_021161695.1 1630 3.05% 149
NW_021161696.1 1190 2.24% 114
NW_021161699.1 4934 10.20% 421
NW_021161700.1 180 0.34% 18
NW_021161713.1 660 1.23% 61
NW_021161715.1 290 0.53% 28
NW_021161718.1 8030 14.74% 664
NW_021161725.1 2700 8.58% 238
NW_021161737.1 2210 3.96% 184
NW_021161743.1 1190 2.13% 102
NW_021161747.1 220 0.39% 20
NW_021161754.1 10820 18.92% 912
NW_021161759.1 100 0.17% 10
NW_021161767.1 5120 5.01% 436
NW_021161769.1 1710 2.95% 151
NW_021161772.1 1940 2.62% 166
NW_021161784.1 780 15.15% 64
NW_021161790.1 10580 17.53% 864
NW_021161794.1 350 0.58% 32
NW_021161796.1 840 1.39% 80
NW_021161798.1 3080 6.54% 258
NW_021161830.1 3320 7.42% 298
NW_021161832.1 1300 2.05% 106
NW_021161839.1 830 1.30% 78
NW_021161842.1 3010 4.61% 279
NW_021161843.1 1670 2.56% 142
NW_021161845.1 10900 16.67% 903
NW_021161850.1 191911 17.18% 16132
NW_021161853.1 6140 9.30% 513
NW_021161857.1 4670 7.04% 400
NW_021161862.1 950 1.44% 82
NW_021161876.1 7690 11.26% 654
NW_021161878.1 5130 7.54% 432
NW_021161881.1 4810 7.99% 395
NW_021161888.1 6250 9.00% 519
NW_021161902.1 7980 12.31% 662
NW_021161927.1 3060 4.09% 262
NW_021161934.1 4220 5.60% 368
NW_021161939.1 11640 15.37% 975
NW_021161954.1 3660 4.75% 316
NW_021161955.1 3370 4.35% 282
NW_021161956.1 6520 8.54% 560
NW_021161958.1 10970 13.97% 913
NW_021161961.1 4630 5.92% 403
NW_021161962.1 1060 1.33% 87
NW_021161965.1 4230 5.35% 371
NW_021161996.1 2120 2.47% 188
NW_021162004.1 730 2.57% 57
NW_021162007.1 2680 3.05% 244
NW_021162009.1 22180 25.44% 1863
NW_021162025.1 3990 4.48% 338
NW_021162035.1 1170 1.25% 102
NW_021162047.1 3150 3.29% 279
NW_021162055.1 7370 7.41% 635
NW_021162083.1 6650 3.86% 616
NW_021162091.1 10200 8.99% 835
NW_021162100.1 10190 8.11% 879
NW_021162108.1 9760 30.62% 759
NW_021162157.1 990 1.64% 90
NW_021162208.1 430 0.17% 42
NW_021162222.1 1230 3.25% 113
NW_021162226.1 820 1.88% 77
NW_021162246.1 24670 23.35% 2029
NW_021162251.1 20310 28.44% 1636
NW_021162253.1 80 0.26% 8
NW_021162263.1 280 1.06% 26
NW_021162265.1 6780 17.54% 560
NW_021162274.1 24970 24.59% 2077
NW_021162277.1 2020 8.12% 173
NW_021162460.1 40 0.53% 4
NW_021162463.1 350 4.64% 33
NW_021162495.1 200 3.04% 20
NW_021162553.1 210 2.42% 18
NW_021162593.1 140 1.51% 14
NW_021162599.1 2885 30.77% 235
NW_021162621.1 350 3.58% 33
NW_021162643.1 5170 20.34% 426
NW_021162814.1 220 1.77% 20
NW_021162871.1 660 4.75% 57
NW_021162949.1 20 0.13% 2
2535 contigs with no values (90143750 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 74575299 1 150 12.22 10
global segment-length histogram

Files

Filename Size md5
SN-VTR-HTH_GATA3-TCF7L2_GABA.bw 516.59 MB 0a2b78e3fce9fa082ba38c5b89328f50
genomic_resource.yaml 1.17 KB d0263000828a84692d2a2f1a9bc25f32
statistics/