Resource
| Id | summary/johansen2025Crossspecies/pseudobulk_atac/macaque/SN-VTR_GAD2_Dopa/bigwig |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC big wig for SN-VTR_GAD2_Dopa cell type from macaque |
| Description | |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| johansen2025Crossspecies_atac_macaque_SN-VTR_GAD2_Dopa | float |
johansen2025Crossspecies_atac_macaque_SN-VTR_GAD2_Dopa |
RPKM?
|
 |
[1.51, 75.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 137094251 | 4.61% | 12547477 |
| NC_005943.1 | 710 | 4.29% | 61 |
| NC_027914.1 | 128860 | 1.10% | 12436 |
| NC_041754.1 | 12502200 | 5.59% | 1136875 |
| NC_041755.1 | 8844590 | 4.51% | 815834 |
| NC_041756.1 | 9045700 | 4.88% | 828545 |
| NC_041757.1 | 7246740 | 4.26% | 669237 |
| NC_041758.1 | 6745940 | 3.60% | 628081 |
| NC_041759.1 | 7634480 | 4.26% | 704495 |
| NC_041760.1 | 9042770 | 5.32% | 825622 |
| NC_041761.1 | 6399010 | 4.39% | 589546 |
| NC_041762.1 | 6816120 | 5.08% | 623295 |
| NC_041763.1 | 6808850 | 6.84% | 612330 |
| NC_041764.1 | 6573240 | 4.94% | 602126 |
| NC_041765.1 | 5761460 | 4.43% | 531745 |
| NC_041766.1 | 5291210 | 4.87% | 485264 |
| NC_041767.1 | 7087070 | 5.53% | 643026 |
| NC_041768.1 | 5759130 | 5.08% | 525077 |
| NC_041769.1 | 5886210 | 7.39% | 527160 |
| NC_041770.1 | 3593050 | 3.76% | 334107 |
| NC_041771.1 | 3154290 | 4.24% | 292358 |
| NC_041772.1 | 4230220 | 7.25% | 375768 |
| NC_041773.1 | 5064980 | 6.57% | 456786 |
| NC_041774.1 | 3186980 | 2.08% | 300984 |
| NW_021160097.1 | 20 | 0.05% | 2 |
| NW_021160098.1 | 120 | 0.30% | 11 |
| NW_021160099.1 | 140 | 0.35% | 13 |
| NW_021160102.1 | 200 | 0.40% | 20 |
| NW_021160105.1 | 140 | 0.26% | 13 |
| NW_021160106.1 | 380 | 0.68% | 36 |
| NW_021160107.1 | 100 | 0.18% | 10 |
| NW_021160109.1 | 660 | 0.80% | 64 |
| NW_021160110.1 | 1640 | 1.39% | 148 |
| NW_021160111.1 | 1210 | 0.91% | 120 |
| NW_021160113.1 | 9300 | 7.99% | 781 |
| NW_021160114.1 | 1170 | 1.78% | 108 |
| NW_021160116.1 | 20 | 0.06% | 2 |
| NW_021160121.1 | 240 | 0.28% | 24 |
| NW_021160122.1 | 270 | 0.29% | 25 |
| NW_021160123.1 | 380 | 0.72% | 37 |
| NW_021160136.1 | 320 | 0.54% | 28 |
| NW_021160140.1 | 710 | 0.55% | 70 |
| NW_021160141.1 | 540 | 0.40% | 53 |
| NW_021160142.1 | 1690 | 3.53% | 156 |
| NW_021160144.1 | 8870 | 0.72% | 879 |
| NW_021160145.1 | 70 | 0.26% | 7 |
| NW_021160147.1 | 100 | 0.33% | 10 |
| NW_021160148.1 | 390 | 1.14% | 38 |
| NW_021160150.1 | 710 | 1.89% | 60 |
| NW_021160155.1 | 460 | 0.84% | 41 |
| NW_021160158.1 | 320 | 0.42% | 31 |
| NW_021160159.1 | 740 | 0.86% | 74 |
| NW_021160161.1 | 7770 | 1.05% | 745 |
| NW_021160167.1 | 60 | 0.16% | 6 |
| NW_021160175.1 | 5690 | 3.07% | 529 |
| NW_021160179.1 | 120 | 0.31% | 12 |
| NW_021160182.1 | 870 | 1.50% | 79 |
| NW_021160184.1 | 190 | 0.31% | 18 |
| NW_021160185.1 | 170 | 0.27% | 15 |
| NW_021160186.1 | 580 | 0.90% | 57 |
| NW_021160187.1 | 140 | 0.18% | 14 |
| NW_021160188.1 | 700 | 0.84% | 67 |
| NW_021160189.1 | 310 | 0.31% | 30 |
| NW_021160190.1 | 540 | 1.51% | 49 |
| NW_021160191.1 | 170 | 0.61% | 15 |
| NW_021160196.1 | 1510 | 3.28% | 140 |
| NW_021160197.1 | 340 | 0.66% | 32 |
| NW_021160199.1 | 120 | 0.21% | 12 |
| NW_021160200.1 | 180 | 0.31% | 18 |
| NW_021160201.1 | 680 | 1.11% | 63 |
| NW_021160202.1 | 290 | 0.44% | 29 |
| NW_021160203.1 | 610 | 0.84% | 57 |
| NW_021160204.1 | 590 | 0.81% | 58 |
| NW_021160205.1 | 200 | 0.27% | 19 |
| NW_021160206.1 | 440 | 0.53% | 40 |
| NW_021160207.1 | 630 | 0.64% | 58 |
| NW_021160209.1 | 1430 | 0.21% | 140 |
| NW_021160211.1 | 1050 | 0.79% | 98 |
| NW_021160220.1 | 1090 | 1.63% | 102 |
| NW_021160221.1 | 400 | 0.56% | 40 |
| NW_021160222.1 | 60 | 0.08% | 6 |
| NW_021160223.1 | 1650 | 1.98% | 145 |
| NW_021160225.1 | 450 | 0.84% | 42 |
| NW_021160226.1 | 270 | 0.75% | 26 |
| NW_021160228.1 | 180 | 0.38% | 17 |
| NW_021160229.1 | 320 | 0.67% | 29 |
| NW_021160231.1 | 200 | 0.37% | 20 |
| NW_021160233.1 | 440 | 0.68% | 40 |
| NW_021160234.1 | 2960 | 4.52% | 258 |
| NW_021160236.1 | 330 | 0.42% | 33 |
| NW_021160237.1 | 2550 | 2.97% | 235 |
| NW_021160238.1 | 2220 | 2.13% | 198 |
| NW_021160239.1 | 120 | 0.41% | 12 |
| NW_021160242.1 | 250 | 0.85% | 24 |
| NW_021160243.1 | 80 | 0.25% | 8 |
| NW_021160244.1 | 4630 | 13.15% | 388 |
| NW_021160245.1 | 40 | 0.09% | 4 |
| NW_021160248.1 | 100 | 0.13% | 10 |
| NW_021160249.1 | 740 | 0.98% | 68 |
| NW_021160250.1 | 210 | 0.33% | 19 |
| NW_021160251.1 | 400 | 0.47% | 39 |
| NW_021160252.1 | 1050 | 1.18% | 98 |
| NW_021160255.1 | 300 | 1.07% | 27 |
| NW_021160263.1 | 80 | 0.15% | 8 |
| NW_021160266.1 | 160 | 0.21% | 16 |
| NW_021160268.1 | 200 | 0.30% | 20 |
| NW_021160270.1 | 420 | 1.21% | 41 |
| NW_021160271.1 | 250 | 0.72% | 20 |
| NW_021160272.1 | 610 | 1.74% | 56 |
| NW_021160273.1 | 120 | 0.30% | 12 |
| NW_021160277.1 | 60 | 0.13% | 4 |
| NW_021160278.1 | 280 | 0.50% | 28 |
| NW_021160279.1 | 490 | 0.74% | 45 |
| NW_021160282.1 | 920 | 0.74% | 87 |
| NW_021160284.1 | 60 | 0.17% | 6 |
| NW_021160285.1 | 180 | 0.40% | 17 |
| NW_021160293.1 | 890 | 1.68% | 81 |
| NW_021160294.1 | 1130 | 1.42% | 107 |
| NW_021160295.1 | 120 | 0.15% | 12 |
| NW_021160297.1 | 420 | 0.75% | 42 |
| NW_021160298.1 | 330 | 1.21% | 33 |
| NW_021160300.1 | 880 | 1.41% | 84 |
| NW_021160305.1 | 130 | 0.32% | 13 |
| NW_021160306.1 | 330 | 0.84% | 32 |
| NW_021160307.1 | 390 | 0.74% | 38 |
| NW_021160308.1 | 360 | 0.67% | 36 |
| NW_021160310.1 | 4550 | 7.81% | 389 |
| NW_021160311.1 | 1230 | 1.56% | 114 |
| NW_021160312.1 | 1580 | 1.79% | 138 |
| NW_021160313.1 | 1020 | 1.08% | 101 |
| NW_021160319.1 | 290 | 0.67% | 29 |
| NW_021160320.1 | 370 | 0.70% | 36 |
| NW_021160324.1 | 670 | 1.05% | 57 |
| NW_021160325.1 | 450 | 0.69% | 44 |
| NW_021160326.1 | 180 | 0.28% | 18 |
| NW_021160327.1 | 710 | 1.08% | 57 |
| NW_021160328.1 | 1880 | 2.97% | 170 |
| NW_021160329.1 | 810 | 1.51% | 78 |
| NW_021160338.1 | 100 | 0.27% | 10 |
| NW_021160341.1 | 310 | 0.67% | 29 |
| NW_021160347.1 | 840 | 0.51% | 79 |
| NW_021160353.1 | 440 | 1.07% | 43 |
| NW_021160354.1 | 40 | 0.10% | 4 |
| NW_021160355.1 | 240 | 0.43% | 23 |
| NW_021160356.1 | 340 | 0.45% | 33 |
| NW_021160357.1 | 80 | 0.26% | 8 |
| NW_021160358.1 | 220 | 0.56% | 22 |
| NW_021160359.1 | 610 | 1.49% | 60 |
| NW_021160361.1 | 40 | 0.08% | 4 |
| NW_021160362.1 | 120 | 0.22% | 12 |
| NW_021160363.1 | 560 | 0.92% | 54 |
| NW_021160364.1 | 530 | 0.86% | 52 |
| NW_021160365.1 | 550 | 0.83% | 52 |
| NW_021160366.1 | 610 | 0.86% | 55 |
| NW_021160367.1 | 2190 | 2.87% | 201 |
| NW_021160368.1 | 80 | 0.10% | 8 |
| NW_021160369.1 | 380 | 0.46% | 34 |
| NW_021160370.1 | 1000 | 1.12% | 93 |
| NW_021160371.1 | 200 | 0.22% | 20 |
| NW_021160372.1 | 1880 | 1.40% | 178 |
| NW_021160373.1 | 1200 | 2.06% | 107 |
| NW_021160374.1 | 800 | 0.64% | 74 |
| NW_021160375.1 | 1450 | 0.79% | 138 |
| NW_021160376.1 | 10400 | 1.21% | 1010 |
| NW_021160381.1 | 50 | 0.10% | 5 |
| NW_021160383.1 | 1860 | 2.70% | 165 |
| NW_021160384.1 | 140 | 0.18% | 13 |
| NW_021160401.1 | 40 | 0.25% | 4 |
| NW_021160410.1 | 980 | 5.96% | 85 |
| NW_021160417.1 | 110 | 0.19% | 11 |
| NW_021160452.1 | 110 | 0.65% | 11 |
| NW_021160482.1 | 20 | 0.12% | 2 |
| NW_021160484.1 | 120 | 0.69% | 12 |
| NW_021160495.1 | 9270 | 1.13% | 873 |
| NW_021160514.1 | 120 | 0.67% | 12 |
| NW_021160523.1 | 50 | 0.28% | 5 |
| NW_021160525.1 | 100 | 0.55% | 10 |
| NW_021160535.1 | 100 | 0.55% | 10 |
| NW_021160549.1 | 170 | 0.92% | 15 |
| NW_021160573.1 | 910 | 4.78% | 77 |
| NW_021160589.1 | 20 | 0.10% | 2 |
| NW_021160606.1 | 4520 | 0.45% | 417 |
| NW_021160623.1 | 80 | 0.40% | 8 |
| NW_021160635.1 | 40 | 0.20% | 4 |
| NW_021160655.1 | 330 | 1.60% | 30 |
| NW_021160656.1 | 110 | 0.54% | 11 |
| NW_021160678.1 | 20 | 0.10% | 2 |
| NW_021160682.1 | 1430 | 6.90% | 126 |
| NW_021160688.1 | 410 | 2.01% | 40 |
| NW_021160701.1 | 1650 | 7.78% | 135 |
| NW_021160725.1 | 20 | 0.09% | 2 |
| NW_021160726.1 | 4840 | 22.25% | 378 |
| NW_021160734.1 | 100 | 0.46% | 10 |
| NW_021160770.1 | 5590 | 24.70% | 472 |
| NW_021160772.1 | 110 | 0.49% | 11 |
| NW_021160805.1 | 490 | 2.09% | 46 |
| NW_021160827.1 | 6080 | 0.83% | 535 |
| NW_021160834.1 | 60 | 0.25% | 6 |
| NW_021160890.1 | 180 | 0.71% | 18 |
| NW_021160903.1 | 500 | 1.89% | 50 |
| NW_021160919.1 | 40 | 0.15% | 4 |
| NW_021160925.1 | 40 | 0.15% | 4 |
| NW_021160946.1 | 310 | 1.17% | 27 |
| NW_021160955.1 | 40 | 0.15% | 4 |
| NW_021160961.1 | 120 | 0.45% | 12 |
| NW_021160976.1 | 760 | 2.79% | 71 |
| NW_021161026.1 | 20 | 0.07% | 2 |
| NW_021161038.1 | 130 | 0.48% | 8 |
| NW_021161041.1 | 40 | 0.14% | 4 |
| NW_021161043.1 | 20 | 0.07% | 2 |
| NW_021161046.1 | 610 | 2.07% | 53 |
| NW_021161062.1 | 70 | 0.24% | 7 |
| NW_021161066.1 | 600 | 2.01% | 58 |
| NW_021161106.1 | 360 | 1.17% | 36 |
| NW_021161107.1 | 80 | 0.26% | 7 |
| NW_021161113.1 | 350 | 1.04% | 35 |
| NW_021161114.1 | 1050 | 3.40% | 86 |
| NW_021161133.1 | 270 | 0.18% | 25 |
| NW_021161138.1 | 40 | 0.13% | 4 |
| NW_021161152.1 | 220 | 0.70% | 21 |
| NW_021161164.1 | 270 | 0.84% | 25 |
| NW_021161166.1 | 440 | 1.35% | 38 |
| NW_021161184.1 | 40 | 0.14% | 4 |
| NW_021161201.1 | 180 | 0.54% | 16 |
| NW_021161211.1 | 290 | 0.87% | 28 |
| NW_021161213.1 | 20 | 0.06% | 2 |
| NW_021161224.1 | 460 | 1.36% | 43 |
| NW_021161226.1 | 370 | 1.11% | 33 |
| NW_021161261.1 | 120 | 0.34% | 12 |
| NW_021161269.1 | 850 | 2.42% | 82 |
| NW_021161282.1 | 2050 | 5.27% | 187 |
| NW_021161303.1 | 20 | 0.06% | 2 |
| NW_021161305.1 | 140 | 0.39% | 12 |
| NW_021161307.1 | 100 | 0.38% | 9 |
| NW_021161312.1 | 20 | 0.06% | 2 |
| NW_021161320.1 | 340 | 0.35% | 32 |
| NW_021161336.1 | 340 | 0.92% | 34 |
| NW_021161338.1 | 40 | 0.11% | 4 |
| NW_021161340.1 | 80 | 0.22% | 8 |
| NW_021161348.1 | 260 | 0.69% | 24 |
| NW_021161355.1 | 550 | 1.42% | 48 |
| NW_021161360.1 | 40 | 0.11% | 4 |
| NW_021161364.1 | 200 | 0.52% | 20 |
| NW_021161377.1 | 900 | 2.26% | 84 |
| NW_021161380.1 | 20 | 0.06% | 2 |
| NW_021161392.1 | 1770 | 4.52% | 158 |
| NW_021161394.1 | 370 | 0.95% | 34 |
| NW_021161399.1 | 220 | 1.00% | 19 |
| NW_021161404.1 | 120 | 0.30% | 11 |
| NW_021161413.1 | 200 | 0.50% | 18 |
| NW_021161422.1 | 30 | 0.08% | 3 |
| NW_021161427.1 | 150 | 0.37% | 15 |
| NW_021161437.1 | 110 | 0.37% | 11 |
| NW_021161446.1 | 80 | 0.20% | 8 |
| NW_021161468.1 | 100 | 0.24% | 10 |
| NW_021161470.1 | 20 | 0.05% | 2 |
| NW_021161486.1 | 490 | 1.15% | 47 |
| NW_021161494.1 | 40 | 0.09% | 4 |
| NW_021161497.1 | 20 | 0.05% | 2 |
| NW_021161505.1 | 430 | 1.00% | 42 |
| NW_021161507.1 | 220 | 0.51% | 21 |
| NW_021161508.1 | 990 | 2.29% | 96 |
| NW_021161519.1 | 300 | 0.68% | 30 |
| NW_021161520.1 | 980 | 2.27% | 80 |
| NW_021161523.1 | 80 | 0.18% | 8 |
| NW_021161525.1 | 810 | 1.84% | 76 |
| NW_021161526.1 | 870 | 1.98% | 76 |
| NW_021161532.1 | 20 | 0.04% | 2 |
| NW_021161537.1 | 1310 | 2.95% | 121 |
| NW_021161545.1 | 1680 | 3.76% | 140 |
| NW_021161554.1 | 290 | 0.64% | 26 |
| NW_021161561.1 | 730 | 1.62% | 66 |
| NW_021161562.1 | 470 | 1.03% | 45 |
| NW_021161567.1 | 100 | 0.22% | 10 |
| NW_021161582.1 | 1210 | 2.63% | 109 |
| NW_021161585.1 | 1310 | 2.84% | 117 |
| NW_021161590.1 | 1700 | 3.69% | 159 |
| NW_021161593.1 | 1200 | 2.58% | 111 |
| NW_021161596.1 | 3540 | 0.66% | 342 |
| NW_021161601.1 | 280 | 0.60% | 28 |
| NW_021161608.1 | 120 | 0.26% | 11 |
| NW_021161614.1 | 110 | 0.23% | 11 |
| NW_021161616.1 | 900 | 1.88% | 76 |
| NW_021161617.1 | 20 | 0.04% | 2 |
| NW_021161627.1 | 340 | 1.02% | 33 |
| NW_021161633.1 | 1450 | 2.93% | 130 |
| NW_021161642.1 | 260 | 0.52% | 26 |
| NW_021161648.1 | 3600 | 7.08% | 307 |
| NW_021161679.1 | 550 | 1.05% | 51 |
| NW_021161680.1 | 190 | 0.37% | 18 |
| NW_021161686.1 | 1060 | 0.78% | 97 |
| NW_021161694.1 | 80 | 0.18% | 8 |
| NW_021161695.1 | 120 | 0.22% | 10 |
| NW_021161696.1 | 40 | 0.08% | 4 |
| NW_021161699.1 | 440 | 0.91% | 44 |
| NW_021161718.1 | 830 | 1.52% | 79 |
| NW_021161725.1 | 310 | 0.99% | 31 |
| NW_021161737.1 | 320 | 0.57% | 31 |
| NW_021161743.1 | 60 | 0.11% | 6 |
| NW_021161747.1 | 20 | 0.04% | 2 |
| NW_021161754.1 | 1740 | 3.04% | 163 |
| NW_021161759.1 | 60 | 0.10% | 6 |
| NW_021161767.1 | 530 | 0.52% | 52 |
| NW_021161769.1 | 100 | 0.17% | 10 |
| NW_021161772.1 | 220 | 0.30% | 21 |
| NW_021161784.1 | 100 | 1.94% | 10 |
| NW_021161790.1 | 1750 | 2.90% | 159 |
| NW_021161794.1 | 20 | 0.03% | 2 |
| NW_021161796.1 | 190 | 0.31% | 19 |
| NW_021161798.1 | 240 | 0.51% | 24 |
| NW_021161830.1 | 340 | 0.76% | 34 |
| NW_021161832.1 | 100 | 0.16% | 10 |
| NW_021161839.1 | 270 | 0.42% | 26 |
| NW_021161842.1 | 450 | 0.69% | 43 |
| NW_021161843.1 | 220 | 0.34% | 22 |
| NW_021161845.1 | 1630 | 2.49% | 151 |
| NW_021161850.1 | 26141 | 2.34% | 2436 |
| NW_021161853.1 | 1060 | 1.61% | 99 |
| NW_021161857.1 | 580 | 0.87% | 57 |
| NW_021161862.1 | 210 | 0.32% | 19 |
| NW_021161876.1 | 570 | 0.83% | 57 |
| NW_021161878.1 | 710 | 1.04% | 66 |
| NW_021161881.1 | 900 | 1.49% | 85 |
| NW_021161888.1 | 960 | 1.38% | 88 |
| NW_021161902.1 | 1160 | 1.79% | 110 |
| NW_021161927.1 | 430 | 0.57% | 41 |
| NW_021161934.1 | 460 | 0.61% | 43 |
| NW_021161939.1 | 2110 | 2.79% | 183 |
| NW_021161954.1 | 490 | 0.64% | 48 |
| NW_021161955.1 | 310 | 0.40% | 30 |
| NW_021161956.1 | 1300 | 1.70% | 125 |
| NW_021161958.1 | 1210 | 1.54% | 114 |
| NW_021161961.1 | 660 | 0.84% | 64 |
| NW_021161962.1 | 60 | 0.08% | 6 |
| NW_021161965.1 | 560 | 0.71% | 54 |
| NW_021161996.1 | 340 | 0.40% | 33 |
| NW_021162004.1 | 40 | 0.14% | 4 |
| NW_021162007.1 | 380 | 0.43% | 37 |
| NW_021162009.1 | 4850 | 5.56% | 426 |
| NW_021162025.1 | 690 | 0.77% | 63 |
| NW_021162035.1 | 290 | 0.31% | 29 |
| NW_021162047.1 | 440 | 0.46% | 42 |
| NW_021162055.1 | 900 | 0.90% | 80 |
| NW_021162083.1 | 830 | 0.48% | 82 |
| NW_021162091.1 | 1400 | 1.23% | 131 |
| NW_021162100.1 | 2580 | 2.05% | 213 |
| NW_021162108.1 | 1580 | 4.96% | 147 |
| NW_021162157.1 | 240 | 0.40% | 24 |
| NW_021162208.1 | 40 | 0.02% | 4 |
| NW_021162222.1 | 80 | 0.21% | 8 |
| NW_021162226.1 | 80 | 0.18% | 8 |
| NW_021162246.1 | 3210 | 3.04% | 308 |
| NW_021162251.1 | 4500 | 6.30% | 410 |
| NW_021162253.1 | 20 | 0.06% | 2 |
| NW_021162263.1 | 20 | 0.08% | 2 |
| NW_021162265.1 | 1780 | 4.61% | 157 |
| NW_021162274.1 | 4200 | 4.14% | 374 |
| NW_021162277.1 | 320 | 1.29% | 31 |
| NW_021162553.1 | 20 | 0.23% | 2 |
| NW_021162593.1 | 40 | 0.43% | 4 |
| NW_021162599.1 | 640 | 6.83% | 53 |
| NW_021162621.1 | 60 | 0.61% | 6 |
| NW_021162643.1 | 780 | 3.07% | 74 |
| NW_021162871.1 | 60 | 0.43% | 5 |
| 2576 contigs with no values (91445665 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 12547477 | 1 | 110 | 10.93 | 10 |
×
Files
| Filename | Size | md5 |
|---|---|---|
| SN-VTR_GAD2_Dopa.bw | 78.13 MB | c75b23f28a018527673f10375b04811f |
| genomic_resource.yaml | 1.12 KB | 452c14998e9bc1a8b22bfeeef0dbf79c |
| statistics/ |